FvH4_3g08760

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0013635
Physical Location & Seq
Reverse (-)
5118349 .. 5119946
1598 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g08760.t1

Sequence Viewer

Length: 447 bp
ATGACCGCGGCTAGGGCTTCTTCCATCCTCGGATCTCCGTCTCCAGCAGCCTCCAAGCCGCTCGCCGACGCCAACGGCCTGGCTTCGATTCCCGATCTGAAGAACCTTGCCTCGTCGCGCCTCCAGGATCTGAAGCAACACATCGATCGCTCACACACCGAGATCCTCAAGGATTGCGATTCCGCTCATTCTCGACTCCACAAGCGCTTCAAGATCCAGACTCAAGCATGTCAGCAAATGTTGGATGAAGCAGACAAGGAATACAAGAAGATGACTCAAAGGACTACTGAAAGTCGGGAAGCAATGATGGCTTCTTATGCAGAGTTCATGGCAGATGCACAGGCCTCGGCTTCTCATGCTTGCAAAACATCCGTTGCTGAGTTGTCACAGTCCTTTGAGAAAACAATTGATGCTCTTAACATCTGTTATGGGATTTCATCCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

149

Amino Acids

16.18

Weight (kDa)

7.7

Isoelectric Point (pI)

58.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013635)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08760 FvH4_5g24040
malus_domestica MD06G1015900.v1.1 MD06G1016300.v1.1 MD06G1016600.v1.1
prunus_persica Prupe.5G019800_v2.0.a1
pyrus_communis pycom06g01280
rosa_chinensis RchiOBHm_Chr7g0213521
rosa_laevigata RLG00000002798
rosa_multiflora Rmu_sc0010076.1_g000002
rosa_roxburghii Rroxscaffold_3G00245810
rosa_rugosa Rorug07G0142700
rosa_samantha Rh7AG275900 Rh7BG270300 Rh7CG294800 Rh7DG282500
rosa_wichuraiana Rw0G023480 Rw7G023840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 61, 185
AccII CGCG 2 cut(s) 8, 118
AciI CCGC 4 cut(s) 6, 8, 59, 183
AclWI GGATC 4 cut(s) 40, 135, 157, 208
AcuI CTGAAG 2 cut(s) 119, 152
AcyI GRCGYC 1 cut(s) 69
AfeI AGCGCT 1 cut(s) 206
AfiI CCNNNNNNNGG 1 cut(s) 12
AgsI TTSAA 1 cut(s) 211
AjnI CCWGG 2 cut(s) 78, 123
Alw26I GTCTC 1 cut(s) 45
AlwI GGATC 4 cut(s) 40, 135, 157, 208
AlwNI CAGNNNCTG 1 cut(s) 130
Aor51HI AGCGCT 1 cut(s) 206
AoxI GGCC 2 cut(s) 76, 342
ApeKI GCWGC 1 cut(s) 47
AspLEI GCGC 2 cut(s) 120, 207
BbvI GCAGC 1 cut(s) 59
BccI CCATC 2 cut(s) 32, 301
BceAI ACGGC 1 cut(s) 91
BcgI CGANNNNNNTGC 2 cut(s) 327, 361
BciT130I CCWGG 2 cut(s) 80, 125
BcoDI GTCTC 1 cut(s) 45
BfaI CTAG 1 cut(s) 12
BfoI RGCGCY 1 cut(s) 208
BisI GCNGC 3 cut(s) 9, 48, 59
BlsI GCNGC 3 cut(s) 10, 49, 60
Bme1390I CCNGG 2 cut(s) 80, 125
BmrFI CCNGG 2 cut(s) 80, 125
BmsI GCATC 2 cut(s) 325, 400
BpmI CTGGAG 2 cut(s) 27, 107
BpuEI CTTGAG 2 cut(s) 152, 207
Bsa29I ATCGAT 1 cut(s) 144
BsaHI GRCGYC 1 cut(s) 69
BsaJI CCNNGG 3 cut(s) 6, 28, 345
Bsc4I CCNNNNNNNGG 1 cut(s) 12
Bse3DI GCAATG 1 cut(s) 309
BseBI CCWGG 2 cut(s) 80, 125
BseCI ATCGAT 1 cut(s) 144
BseDI CCNNGG 3 cut(s) 6, 28, 345
BseGI GGATG 4 cut(s) 24, 250, 368, 437
BseLI CCNNNNNNNGG 1 cut(s) 12
BseMI GCAATG 1 cut(s) 309
BseMII CTCAG 1 cut(s) 369
BseXI GCAGC 1 cut(s) 59
Bsh1236I CGCG 2 cut(s) 8, 118
Bsh1285I CGRYCG 1 cut(s) 148
BshFI GGCC 2 cut(s) 78, 344
BshVI ATCGAT 1 cut(s) 144
BsiEI CGRYCG 1 cut(s) 148
BslI CCNNNNNNNGG 1 cut(s) 12
BsmAI GTCTC 1 cut(s) 45
BsmBI CGTCTC 1 cut(s) 45
BsnI GGCC 2 cut(s) 78, 344
Bsp143I GATC 6 cut(s) 32, 94, 127, 145, 162, 213
BspACI CCGC 4 cut(s) 6, 8, 59, 183
BspANI GGCC 2 cut(s) 78, 344
BspCNI CTCAG 1 cut(s) 370
BspDI ATCGAT 1 cut(s) 144
BspFNI CGCG 2 cut(s) 8, 118
BspPI GGATC 4 cut(s) 40, 135, 157, 208
BsrBI CCGCTC 2 cut(s) 61, 185
BsrDI GCAATG 1 cut(s) 309
BssECI CCNNGG 3 cut(s) 6, 28, 345
BssMI GATC 6 cut(s) 32, 94, 127, 145, 162, 213
BssNI GRCGYC 1 cut(s) 69
Bst2UI CCWGG 2 cut(s) 80, 125
Bst4CI ACNGT 1 cut(s) 390
BstACI GRCGYC 1 cut(s) 69
BstC8I GCNNGC 2 cut(s) 63, 361
BstDEI CTNAG 1 cut(s) 378
BstDSI CCRYGG 1 cut(s) 6
BstF5I GGATG 4 cut(s) 24, 250, 368, 437
BstFNI CGCG 2 cut(s) 8, 118
BstH2I RGCGCY 1 cut(s) 208
BstHHI GCGC 2 cut(s) 120, 207
BstKTI GATC 6 cut(s) 35, 97, 130, 148, 165, 216
BstMAI GTCTC 1 cut(s) 45
BstMBI GATC 6 cut(s) 32, 94, 127, 145, 162, 213
BstMCI CGRYCG 1 cut(s) 148
BstMWI GCNNNNNNNGC 4 cut(s) 14, 308, 317, 356
BstNI CCWGG 2 cut(s) 80, 125
BstNSI RCATGY 1 cut(s) 231
BstSCI CCNGG 2 cut(s) 78, 123
BstUI CGCG 2 cut(s) 8, 118
BstV1I GCAGC 1 cut(s) 59
BstX2I RGATCY 4 cut(s) 32, 127, 162, 213
BstXI CCANNNNNNTGG 1 cut(s) 79
BstYI RGATCY 4 cut(s) 32, 127, 162, 213
Bsu15I ATCGAT 1 cut(s) 144
BsuRI GGCC 2 cut(s) 78, 344
BsuTUI ATCGAT 1 cut(s) 144
BtgI CCRYGG 1 cut(s) 6
BtsCI GGATG 4 cut(s) 24, 250, 368, 437
Cac8I GCNNGC 2 cut(s) 63, 361
CaiI CAGNNNCTG 1 cut(s) 130
CfoI GCGC 2 cut(s) 120, 207
Cfr42I CCGCGG 1 cut(s) 9
ClaI ATCGAT 1 cut(s) 144
CseI GACGC 1 cut(s) 77
CviAII CATG 3 cut(s) 228, 328, 356
CviJI RGCY 9 cut(s) 11, 17, 50, 58, 78, 83, 311, 344, 350
CviKI_1 RGCY 9 cut(s) 11, 17, 50, 58, 78, 83, 311, 344, 350
DdeI CTNAG 1 cut(s) 378
DpnI GATC 6 cut(s) 34, 96, 129, 147, 164, 215
DpnII GATC 6 cut(s) 32, 94, 127, 145, 162, 213
Eco147I AGGCCT 1 cut(s) 344
Eco47III AGCGCT 1 cut(s) 206
Eco57I CTGAAG 2 cut(s) 119, 152
EcoRII CCWGG 2 cut(s) 78, 123
Esp3I CGTCTC 1 cut(s) 45
FaeI CATG 3 cut(s) 231, 331, 359
FaiI YATR 5 cut(s) 229, 318, 329, 357, 429
FatI CATG 3 cut(s) 227, 327, 355
Fnu4HI GCNGC 3 cut(s) 9, 48, 59
FokI GGATG 4 cut(s) 11, 257, 355, 424
Fsp4HI GCNGC 3 cut(s) 9, 48, 59
FspBI CTAG 1 cut(s) 12
GlaI GCGC 2 cut(s) 119, 206
GluI GCNGC 3 cut(s) 9, 48, 59
GsuI CTGGAG 2 cut(s) 27, 107
HaeII RGCGCY 1 cut(s) 208
HaeIII GGCC 2 cut(s) 78, 344
HgaI GACGC 1 cut(s) 77
HhaI GCGC 2 cut(s) 120, 207
Hin1I GRCGYC 1 cut(s) 69
Hin1II CATG 3 cut(s) 231, 331, 359
Hin6I GCGC 2 cut(s) 118, 205
HinP1I GCGC 2 cut(s) 118, 205
HinfI GANTC 5 cut(s) 88, 179, 195, 220, 274
Hpy188I TCNGA 3 cut(s) 32, 99, 132
Hpy188III TCNNGA 5 cut(s) 92, 192, 211, 217, 296
Hpy99I CGWCG 2 cut(s) 71, 118
HpyCH4III ACNGT 1 cut(s) 390
HpyCH4V TGCA 3 cut(s) 320, 338, 363
HpyF10VI GCNNNNNNNGC 4 cut(s) 14, 308, 317, 356
HpyF3I CTNAG 1 cut(s) 378
Hsp92I GRCGYC 1 cut(s) 69
Hsp92II CATG 3 cut(s) 231, 331, 359
HspAI GCGC 2 cut(s) 118, 205
KspI CCGCGG 1 cut(s) 9
Kzo9I GATC 6 cut(s) 32, 94, 127, 145, 162, 213
LpnPI CCDG 7 cut(s) 57, 65, 92, 110, 137, 230, 326
Lsp1109I GCAGC 1 cut(s) 59
LweI GCATC 2 cut(s) 325, 400
MaeI CTAG 1 cut(s) 12
MaeIII GTNAC 1 cut(s) 384
MalI GATC 6 cut(s) 34, 96, 129, 147, 164, 215
MbiI CCGCTC 2 cut(s) 61, 185
MboI GATC 6 cut(s) 32, 94, 127, 145, 162, 213
MboII GAAGA 3 cut(s) 12, 112, 280
MfeI CAATTG 1 cut(s) 405
MflI RGATCY 4 cut(s) 32, 127, 162, 213
MluCI AATT 1 cut(s) 405
MlyI GAGTC 3 cut(s) 189, 214, 268
MmeI TCCRAC 1 cut(s) 222
MnlI CCTC 6 cut(s) 38, 61, 121, 131, 176, 355
MseI TTAA 1 cut(s) 417
MspA1I CMGCKG 1 cut(s) 8
MspR9I CCNGG 2 cut(s) 80, 125
MunI CAATTG 1 cut(s) 405
MvaI CCWGG 2 cut(s) 80, 125
MvnI CGCG 2 cut(s) 8, 118
MwoI GCNNNNNNNGC 4 cut(s) 14, 308, 317, 356
NdeII GATC 6 cut(s) 32, 94, 127, 145, 162, 213
NlaIII CATG 3 cut(s) 231, 331, 359
NmeAIII GCCGAG 1 cut(s) 326
NmuCI GTSAC 1 cut(s) 384
NspI RCATGY 1 cut(s) 231
PceI AGGCCT 1 cut(s) 344
PfeI GAWTC 2 cut(s) 88, 179
PfoI TCCNGGA 1 cut(s) 123
PkrI GCNGC 3 cut(s) 10, 49, 60
Ple19I CGATCG 1 cut(s) 148
PleI GAGTC 3 cut(s) 189, 214, 268
PpsI GAGTC 3 cut(s) 189, 214, 268
Psp6I CCWGG 2 cut(s) 78, 123
PspGI CCWGG 2 cut(s) 78, 123
PstNI CAGNNNCTG 1 cut(s) 130
PsuI RGATCY 4 cut(s) 32, 127, 162, 213
PvuI CGATCG 1 cut(s) 148
SacII CCGCGG 1 cut(s) 9
SaqAI TTAA 1 cut(s) 417
SatI GCNGC 3 cut(s) 9, 48, 59
Sau3AI GATC 6 cut(s) 32, 94, 127, 145, 162, 213
SchI GAGTC 3 cut(s) 189, 214, 268
ScrFI CCNGG 2 cut(s) 80, 125
SetI ASST 1 cut(s) 108
SfaNI GCATC 2 cut(s) 325, 400
Sfr303I CCGCGG 1 cut(s) 9
SgrBI CCGCGG 1 cut(s) 9
SmlI CTYRAG 2 cut(s) 167, 222
SmoI CTYRAG 2 cut(s) 167, 222
Sse9I AATT 1 cut(s) 405
SseBI AGGCCT 1 cut(s) 344
SsiI CCGC 4 cut(s) 6, 8, 59, 183
SspMI CTAG 1 cut(s) 12
StuI AGGCCT 1 cut(s) 344
StyD4I CCNGG 2 cut(s) 78, 123
TaaI ACNGT 1 cut(s) 390
TaqI TCGA 3 cut(s) 86, 144, 193
TasI AATT 1 cut(s) 405
TauI GCSGC 2 cut(s) 11, 61
TfiI GAWTC 2 cut(s) 88, 179
Tru1I TTAA 1 cut(s) 417
Tru9I TTAA 1 cut(s) 417
TseFI GTSAC 1 cut(s) 384
TseI GCWGC 1 cut(s) 47
Tsp45I GTSAC 1 cut(s) 384
TspDTI ATGAA 3 cut(s) 261, 316, 426
TspGWI ACGGA 2 cut(s) 27, 361
XceI RCATGY 1 cut(s) 231
XspI CTAG 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.