Rh7BG270300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0013635
Physical Location & Seq
Reverse (-)
24820597 .. 24824521
3925 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG270300.1

Sequence Viewer

Length: 534 bp
ATGAAGAAAGGTTCAGGCGGTGGAAGACGAAGCACTCGCCGGAGTTCAGCTGCCGCGCTTCTCGAAACGCCACCGCGAGTGGCGTCTCCTCCTTCTCCGAACCAATCTCCTCCCAAATCGACGCTTCTCAACAACAGCATCAAGCGCGCCAAGAAGATGACAGCTGTCAGAGCTTCTTCCATCATCGGATCTCCATCTCCGGCAGCAGCCTCTAAGCCGCTCGCCGACGCCAACGGCCTGGCTTCGATTCCCGATCTCAAGAACCTCGCCTCCTCGCACCTCCAGGATCTCAAGCAACACATCGATCGCTCTCACACCGAGATCCTCAAGGATTGCGATTCCGCTCATTCTCGACTCCACAAGCGCTTTAAGATTCAGACTCAAGCATGTCAGCAAATGTTGGATGAAGCAGACAAGGAATATAAGAAGATGACCCAAAGGACTACTGAAAGTCGGGAAGCAATGATGGCTTCTTATGCAGAGTTCATGGCAGATGCACAGGCCTCGGCTTCTCGTGGTATGTCTTCAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

177

Amino Acids

19.08

Weight (kDa)

10.05

Isoelectric Point (pI)

74.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013635)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08760 FvH4_5g24040
malus_domestica MD06G1015900.v1.1 MD06G1016300.v1.1 MD06G1016600.v1.1
prunus_persica Prupe.5G019800_v2.0.a1
pyrus_communis pycom06g01280
rosa_chinensis RchiOBHm_Chr7g0213521
rosa_laevigata RLG00000002798
rosa_multiflora Rmu_sc0010076.1_g000002
rosa_roxburghii Rroxscaffold_3G00245810
rosa_rugosa Rorug07G0142700
rosa_samantha Rh7AG275900 Rh7BG270300 Rh7CG294800 Rh7DG282500
rosa_wichuraiana Rw0G023480 Rw7G023840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 220, 344
AccII CGCG 3 cut(s) 56, 76, 147
AciI CCGC 5 cut(s) 18, 54, 74, 218, 342
AclWI GGATC 3 cut(s) 196, 294, 316
AcuI CTGAAG 1 cut(s) 510
AcyI GRCGYC 2 cut(s) 83, 228
AfeI AGCGCT 1 cut(s) 365
AjnI CCWGG 2 cut(s) 237, 282
AloI GAACNNNNNNTCC 2 cut(s) 254, 286
AluBI AGCT 4 cut(s) 50, 164, 173, 530
AluI AGCT 4 cut(s) 50, 164, 173, 530
Alw26I GTCTC 1 cut(s) 90
AlwI GGATC 3 cut(s) 196, 294, 316
Aor51HI AGCGCT 1 cut(s) 365
AoxI GGCC 2 cut(s) 235, 501
ApeKI GCWGC 3 cut(s) 50, 203, 206
AspLEI GCGC 4 cut(s) 58, 147, 149, 366
BauI CACGAG 1 cut(s) 513
BbsI GAAGAC 2 cut(s) 31, 516
BbvI GCAGC 3 cut(s) 37, 215, 218
BccI CCATC 3 cut(s) 188, 202, 460
BceAI ACGGC 1 cut(s) 250
BcgI CGANNNNNNTGC 2 cut(s) 486, 520
BciT130I CCWGG 2 cut(s) 239, 284
BcoDI GTCTC 1 cut(s) 90
BfoI RGCGCY 1 cut(s) 367
BisI GCNGC 5 cut(s) 51, 54, 204, 207, 218
BlsI GCNGC 5 cut(s) 52, 55, 205, 208, 219
Bme1390I CCNGG 2 cut(s) 239, 284
BmrFI CCNGG 2 cut(s) 239, 284
BmsI GCATC 2 cut(s) 147, 484
BoxI GACNNNNGTC 1 cut(s) 164
BpiI GAAGAC 2 cut(s) 31, 516
BpmI CTGGAG 1 cut(s) 266
BpuEI CTTGAG 4 cut(s) 242, 275, 311, 366
Bsa29I ATCGAT 1 cut(s) 303
BsaBI GATNNNNATC 1 cut(s) 193
BsaHI GRCGYC 2 cut(s) 83, 228
BsaJI CCNNGG 1 cut(s) 504
BsaXI ACNNNNNCTCC 2 cut(s) 254, 284
Bse3DI GCAATG 1 cut(s) 468
Bse8I GATNNNNATC 1 cut(s) 193
BseBI CCWGG 2 cut(s) 239, 284
BseCI ATCGAT 1 cut(s) 303
BseDI CCNNGG 1 cut(s) 504
BseGI GGATG 1 cut(s) 409
BseJI GATNNNNATC 1 cut(s) 193
BseMI GCAATG 1 cut(s) 468
BsePI GCGCGC 1 cut(s) 145
BseRI GAGGAG 3 cut(s) 78, 99, 262
BseXI GCAGC 3 cut(s) 37, 215, 218
Bsh1236I CGCG 3 cut(s) 56, 76, 147
Bsh1285I CGRYCG 1 cut(s) 307
BshFI GGCC 2 cut(s) 237, 503
BshVI ATCGAT 1 cut(s) 303
BsiEI CGRYCG 1 cut(s) 307
BsiSI CCGG 2 cut(s) 40, 200
BsmAI GTCTC 1 cut(s) 90
BsmBI CGTCTC 1 cut(s) 90
BsnI GGCC 2 cut(s) 237, 503
Bsp143I GATC 5 cut(s) 188, 253, 286, 304, 321
BspACI CCGC 5 cut(s) 18, 54, 74, 218, 342
BspANI GGCC 2 cut(s) 237, 503
BspDI ATCGAT 1 cut(s) 303
BspFNI CGCG 3 cut(s) 56, 76, 147
BspPI GGATC 3 cut(s) 196, 294, 316
BsrBI CCGCTC 2 cut(s) 220, 344
BsrDI GCAATG 1 cut(s) 468
BssECI CCNNGG 1 cut(s) 504
BssHII GCGCGC 1 cut(s) 145
BssMI GATC 5 cut(s) 188, 253, 286, 304, 321
BssNI GRCGYC 2 cut(s) 83, 228
BssSI CACGAG 1 cut(s) 513
Bst2BI CACGAG 1 cut(s) 513
Bst2UI CCWGG 2 cut(s) 239, 284
BstACI GRCGYC 2 cut(s) 83, 228
BstC8I GCNNGC 2 cut(s) 147, 222
BstDEI CTNAG 1 cut(s) 213
BstF5I GGATG 1 cut(s) 409
BstFNI CGCG 3 cut(s) 56, 76, 147
BstH2I RGCGCY 1 cut(s) 367
BstHHI GCGC 4 cut(s) 58, 147, 149, 366
BstKTI GATC 5 cut(s) 191, 256, 289, 307, 324
BstMAI GTCTC 1 cut(s) 90
BstMBI GATC 5 cut(s) 188, 253, 286, 304, 321
BstMCI CGRYCG 1 cut(s) 307
BstMWI GCNNNNNNNGC 4 cut(s) 144, 170, 467, 476
BstNI CCWGG 2 cut(s) 239, 284
BstNSI RCATGY 1 cut(s) 390
BstPAI GACNNNNGTC 1 cut(s) 164
BstSCI CCNGG 2 cut(s) 237, 282
BstUI CGCG 3 cut(s) 56, 76, 147
BstV1I GCAGC 3 cut(s) 37, 215, 218
BstV2I GAAGAC 2 cut(s) 31, 516
BstX2I RGATCY 3 cut(s) 188, 286, 321
BstXI CCANNNNNNTGG 1 cut(s) 238
BstYI RGATCY 3 cut(s) 188, 286, 321
Bsu15I ATCGAT 1 cut(s) 303
BsuRI GGCC 2 cut(s) 237, 503
BsuTUI ATCGAT 1 cut(s) 303
BtsCI GGATG 1 cut(s) 409
Cac8I GCNNGC 2 cut(s) 147, 222
CfoI GCGC 4 cut(s) 58, 147, 149, 366
ClaI ATCGAT 1 cut(s) 303
CseI GACGC 3 cut(s) 72, 130, 236
CviAII CATG 2 cut(s) 387, 487
DdeI CTNAG 1 cut(s) 213
DpnI GATC 5 cut(s) 190, 255, 288, 306, 323
DpnII GATC 5 cut(s) 188, 253, 286, 304, 321
Eco147I AGGCCT 1 cut(s) 503
Eco47III AGCGCT 1 cut(s) 365
Eco57I CTGAAG 1 cut(s) 510
EcoRII CCWGG 2 cut(s) 237, 282
Esp3I CGTCTC 1 cut(s) 90
FaeI CATG 2 cut(s) 390, 490
FaiI YATR 5 cut(s) 388, 423, 477, 488, 521
FatI CATG 2 cut(s) 386, 486
Fnu4HI GCNGC 5 cut(s) 51, 54, 204, 207, 218
FokI GGATG 1 cut(s) 416
Fsp4HI GCNGC 5 cut(s) 51, 54, 204, 207, 218
GlaI GCGC 4 cut(s) 57, 146, 148, 365
GluI GCNGC 5 cut(s) 51, 54, 204, 207, 218
GsuI CTGGAG 1 cut(s) 266
HaeII RGCGCY 1 cut(s) 367
HaeIII GGCC 2 cut(s) 237, 503
HapII CCGG 2 cut(s) 40, 200
HgaI GACGC 3 cut(s) 72, 130, 236
HhaI GCGC 4 cut(s) 58, 147, 149, 366
Hin1I GRCGYC 2 cut(s) 83, 228
Hin1II CATG 2 cut(s) 390, 490
Hin6I GCGC 4 cut(s) 56, 145, 147, 364
HinP1I GCGC 4 cut(s) 56, 145, 147, 364
HinfI GANTC 5 cut(s) 247, 338, 354, 373, 379
HpaII CCGG 2 cut(s) 40, 200
Hpy188I TCNGA 4 cut(s) 99, 170, 188, 378
Hpy188III TCNNGA 5 cut(s) 62, 251, 259, 351, 455
Hpy99I CGWCG 2 cut(s) 124, 230
HpyAV CCTTC 1 cut(s) 102
HpyCH4V TGCA 2 cut(s) 479, 497
HpyF10VI GCNNNNNNNGC 4 cut(s) 144, 170, 467, 476
HpyF3I CTNAG 1 cut(s) 213
Hsp92I GRCGYC 2 cut(s) 83, 228
Hsp92II CATG 2 cut(s) 390, 490
HspAI GCGC 4 cut(s) 56, 145, 147, 364
Kzo9I GATC 5 cut(s) 188, 253, 286, 304, 321
LpnPI CCDG 7 cut(s) 53, 213, 224, 251, 269, 296, 485
Lsp1109I GCAGC 3 cut(s) 37, 215, 218
LweI GCATC 2 cut(s) 147, 484
MalI GATC 5 cut(s) 190, 255, 288, 306, 323
MbiI CCGCTC 2 cut(s) 220, 344
MboI GATC 5 cut(s) 188, 253, 286, 304, 321
MboII GAAGA 6 cut(s) 16, 36, 166, 168, 439, 516
MflI RGATCY 3 cut(s) 188, 286, 321
MlyI GAGTC 2 cut(s) 348, 373
MmeI TCCRAC 1 cut(s) 381
MnlI CCTC 9 cut(s) 99, 120, 220, 275, 280, 283, 290, 335, 514
MseI TTAA 2 cut(s) 369, 532
MspA1I CMGCKG 2 cut(s) 50, 164
MspI CCGG 2 cut(s) 40, 200
MspR9I CCNGG 2 cut(s) 239, 284
MvaI CCWGG 2 cut(s) 239, 284
MvnI CGCG 3 cut(s) 56, 76, 147
MwoI GCNNNNNNNGC 4 cut(s) 144, 170, 467, 476
NdeII GATC 5 cut(s) 188, 253, 286, 304, 321
NlaIII CATG 2 cut(s) 390, 490
NmeAIII GCCGAG 1 cut(s) 485
NspI RCATGY 1 cut(s) 390
PauI GCGCGC 1 cut(s) 145
PceI AGGCCT 1 cut(s) 503
PfeI GAWTC 3 cut(s) 247, 338, 373
PfoI TCCNGGA 1 cut(s) 282
PkrI GCNGC 5 cut(s) 52, 55, 205, 208, 219
Ple19I CGATCG 1 cut(s) 307
PleI GAGTC 2 cut(s) 348, 373
PpsI GAGTC 2 cut(s) 348, 373
PshAI GACNNNNGTC 1 cut(s) 164
Psp6I CCWGG 2 cut(s) 237, 282
PspGI CCWGG 2 cut(s) 237, 282
PsuI RGATCY 3 cut(s) 188, 286, 321
PteI GCGCGC 1 cut(s) 145
PvuI CGATCG 1 cut(s) 307
PvuII CAGCTG 2 cut(s) 50, 164
SaqAI TTAA 2 cut(s) 369, 532
SatI GCNGC 5 cut(s) 51, 54, 204, 207, 218
Sau3AI GATC 5 cut(s) 188, 253, 286, 304, 321
SchI GAGTC 2 cut(s) 348, 373
ScrFI CCNGG 2 cut(s) 239, 284
SetI ASST 7 cut(s) 13, 52, 166, 175, 267, 282, 532
SfaNI GCATC 2 cut(s) 147, 484
SmlI CTYRAG 4 cut(s) 257, 290, 326, 381
SmoI CTYRAG 4 cut(s) 257, 290, 326, 381
SseBI AGGCCT 1 cut(s) 503
SsiI CCGC 5 cut(s) 18, 54, 74, 218, 342
StuI AGGCCT 1 cut(s) 503
StyD4I CCNGG 2 cut(s) 237, 282
TaqI TCGA 5 cut(s) 63, 119, 245, 303, 352
TauI GCSGC 2 cut(s) 56, 220
TfiI GAWTC 3 cut(s) 247, 338, 373
Tru1I TTAA 2 cut(s) 369, 532
Tru9I TTAA 2 cut(s) 369, 532
TseI GCWGC 3 cut(s) 50, 203, 206
TspDTI ATGAA 3 cut(s) 17, 420, 475
XceI RCATGY 1 cut(s) 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.