Rroxscaffold_3G00245810

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0013635
Physical Location & Seq
Forward (+)
38934851 .. 38937940
3090 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00245810.1

Sequence Viewer

Length: 606 bp
ATGAAGAAAGGTTCAGGCGGTGGAAGACGAAGCACTCGCCGGAGTTCAGCTGCCGCGCTTCTCGAAACGCCACCGCGAGTGGCGTCTCCTCCTTCTCCGAACCAATCTCCTCCCAAATCGACGCTTCTCAACAACAGCAACAAGCGCGCCAAGAAGATGACAGCTGTCAGGGCTTCTTCCATCATCGGATCTCCATCTCCGGCAGCGGCCTCTAAGCCGCTCACCGACGTCAACTGCCTGGCTTCGATTCCCGATCTGAAGAACCTCGCCTCCTCGCGCCTCCAGGATCTCAAGCAACACATCGATCGCTCTCACACCGAGATCCTCAAGGATTGCGATTCCGCTCATTCTCGACTCCACAAGCGCTTTAAGATTCAGACTCAAGCATGTCAGCAAATGTTGGATGAAGCAGACAAGGACTACAAGAAGATGACCCAAAAGACTACTGAAAGTCAGGAAGCAATGATGGCTTCTTATGCAGAGTTCATGGCAGATGCACAGGCCTCGGCTTCTCGTGCTTGCAAAACATCCATCGCTGAGTTGTCACAGTCCTTTGAGAAAGCAATTGATGCTCTTAACATCCGTTATGGGATTTCATCAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

201

Amino Acids

21.82

Weight (kDa)

9.8

Isoelectric Point (pI)

76.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013635)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08760 FvH4_5g24040
malus_domestica MD06G1015900.v1.1 MD06G1016300.v1.1 MD06G1016600.v1.1
prunus_persica Prupe.5G019800_v2.0.a1
pyrus_communis pycom06g01280
rosa_chinensis RchiOBHm_Chr7g0213521
rosa_laevigata RLG00000002798
rosa_multiflora Rmu_sc0010076.1_g000002
rosa_roxburghii Rroxscaffold_3G00245810
rosa_rugosa Rorug07G0142700
rosa_samantha Rh7AG275900 Rh7BG270300 Rh7CG294800 Rh7DG282500
rosa_wichuraiana Rw0G023480 Rw7G023840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 231
AccBSI CCGCTC 2 cut(s) 220, 344
AccII CGCG 4 cut(s) 56, 76, 147, 277
AciI CCGC 6 cut(s) 18, 54, 74, 206, 218, 342
AclWI GGATC 3 cut(s) 196, 294, 316
AcuI CTGAAG 1 cut(s) 278
AcyI GRCGYC 2 cut(s) 83, 228
AfeI AGCGCT 1 cut(s) 365
AjnI CCWGG 2 cut(s) 237, 282
AloI GAACNNNNNNTCC 2 cut(s) 254, 286
AluBI AGCT 2 cut(s) 50, 164
AluI AGCT 2 cut(s) 50, 164
Alw26I GTCTC 1 cut(s) 90
AlwI GGATC 3 cut(s) 196, 294, 316
Aor51HI AGCGCT 1 cut(s) 365
AoxI GGCC 2 cut(s) 207, 501
ApeKI GCWGC 2 cut(s) 50, 203
AspLEI GCGC 5 cut(s) 58, 147, 149, 279, 366
AsuHPI GGTGA 1 cut(s) 214
BauI CACGAG 1 cut(s) 513
BbsI GAAGAC 1 cut(s) 31
BbvI GCAGC 2 cut(s) 37, 215
BccI CCATC 4 cut(s) 188, 202, 460, 539
BcgI CGANNNNNNTGC 2 cut(s) 486, 520
BciT130I CCWGG 2 cut(s) 239, 284
BcoDI GTCTC 1 cut(s) 90
BfoI RGCGCY 1 cut(s) 367
BisI GCNGC 5 cut(s) 51, 54, 204, 207, 218
BlsI GCNGC 5 cut(s) 52, 55, 205, 208, 219
Bme1390I CCNGG 2 cut(s) 239, 284
BmrFI CCNGG 2 cut(s) 239, 284
BmsI GCATC 2 cut(s) 484, 559
BoxI GACNNNNGTC 1 cut(s) 164
BpiI GAAGAC 1 cut(s) 31
BpmI CTGGAG 1 cut(s) 266
BpuEI CTTGAG 3 cut(s) 275, 311, 366
Bsa29I ATCGAT 1 cut(s) 303
BsaBI GATNNNNATC 1 cut(s) 193
BsaHI GRCGYC 2 cut(s) 83, 228
BsaJI CCNNGG 1 cut(s) 504
BsaXI ACNNNNNCTCC 2 cut(s) 254, 284
Bse3DI GCAATG 1 cut(s) 468
Bse8I GATNNNNATC 1 cut(s) 193
BseBI CCWGG 2 cut(s) 239, 284
BseCI ATCGAT 1 cut(s) 303
BseDI CCNNGG 1 cut(s) 504
BseGI GGATG 3 cut(s) 409, 527, 579
BseJI GATNNNNATC 1 cut(s) 193
BseMI GCAATG 1 cut(s) 468
BseMII CTCAG 1 cut(s) 528
BsePI GCGCGC 1 cut(s) 145
BseRI GAGGAG 3 cut(s) 78, 99, 262
BseXI GCAGC 2 cut(s) 37, 215
Bsh1236I CGCG 4 cut(s) 56, 76, 147, 277
Bsh1285I CGRYCG 1 cut(s) 307
BshFI GGCC 2 cut(s) 209, 503
BshVI ATCGAT 1 cut(s) 303
BsiEI CGRYCG 1 cut(s) 307
BsiSI CCGG 2 cut(s) 40, 200
BsmAI GTCTC 1 cut(s) 90
BsmBI CGTCTC 1 cut(s) 90
BsnI GGCC 2 cut(s) 209, 503
Bsp143I GATC 5 cut(s) 188, 253, 286, 304, 321
BspACI CCGC 6 cut(s) 18, 54, 74, 206, 218, 342
BspANI GGCC 2 cut(s) 209, 503
BspCNI CTCAG 1 cut(s) 529
BspDI ATCGAT 1 cut(s) 303
BspFNI CGCG 4 cut(s) 56, 76, 147, 277
BspPI GGATC 3 cut(s) 196, 294, 316
BsrBI CCGCTC 2 cut(s) 220, 344
BsrDI GCAATG 1 cut(s) 468
BssECI CCNNGG 1 cut(s) 504
BssHII GCGCGC 1 cut(s) 145
BssMI GATC 5 cut(s) 188, 253, 286, 304, 321
BssNI GRCGYC 2 cut(s) 83, 228
BssSI CACGAG 1 cut(s) 513
Bst2BI CACGAG 1 cut(s) 513
Bst2UI CCWGG 2 cut(s) 239, 284
Bst4CI ACNGT 1 cut(s) 549
BstACI GRCGYC 2 cut(s) 83, 228
BstAPI GCANNNNNTGC 1 cut(s) 569
BstC8I GCNNGC 2 cut(s) 147, 520
BstDEI CTNAG 2 cut(s) 213, 537
BstF5I GGATG 3 cut(s) 409, 527, 579
BstFNI CGCG 4 cut(s) 56, 76, 147, 277
BstH2I RGCGCY 1 cut(s) 367
BstHHI GCGC 5 cut(s) 58, 147, 149, 279, 366
BstKTI GATC 5 cut(s) 191, 256, 289, 307, 324
BstMAI GTCTC 1 cut(s) 90
BstMBI GATC 5 cut(s) 188, 253, 286, 304, 321
BstMCI CGRYCG 1 cut(s) 307
BstMWI GCNNNNNNNGC 6 cut(s) 144, 170, 467, 476, 515, 569
BstNI CCWGG 2 cut(s) 239, 284
BstNSI RCATGY 1 cut(s) 390
BstPAI GACNNNNGTC 1 cut(s) 164
BstSCI CCNGG 2 cut(s) 237, 282
BstUI CGCG 4 cut(s) 56, 76, 147, 277
BstV1I GCAGC 2 cut(s) 37, 215
BstV2I GAAGAC 1 cut(s) 31
BstX2I RGATCY 3 cut(s) 188, 286, 321
BstYI RGATCY 3 cut(s) 188, 286, 321
Bsu15I ATCGAT 1 cut(s) 303
BsuRI GGCC 2 cut(s) 209, 503
BsuTUI ATCGAT 1 cut(s) 303
BtgZI GCGATG 1 cut(s) 517
BtsCI GGATG 3 cut(s) 409, 527, 579
Cac8I GCNNGC 2 cut(s) 147, 520
CfoI GCGC 5 cut(s) 58, 147, 149, 279, 366
ClaI ATCGAT 1 cut(s) 303
CseI GACGC 2 cut(s) 72, 130
CviAII CATG 2 cut(s) 387, 487
CviJI RGCY 9 cut(s) 50, 164, 173, 209, 217, 242, 470, 503, 509
CviKI_1 RGCY 9 cut(s) 50, 164, 173, 209, 217, 242, 470, 503, 509
DdeI CTNAG 2 cut(s) 213, 537
DpnI GATC 5 cut(s) 190, 255, 288, 306, 323
DpnII GATC 5 cut(s) 188, 253, 286, 304, 321
Eco147I AGGCCT 1 cut(s) 503
Eco47III AGCGCT 1 cut(s) 365
Eco57I CTGAAG 1 cut(s) 278
EcoRII CCWGG 2 cut(s) 237, 282
Esp3I CGTCTC 1 cut(s) 90
FaeI CATG 2 cut(s) 390, 490
FaiI YATR 4 cut(s) 388, 477, 488, 588
FatI CATG 2 cut(s) 386, 486
Fnu4HI GCNGC 5 cut(s) 51, 54, 204, 207, 218
FokI GGATG 3 cut(s) 416, 514, 566
Fsp4HI GCNGC 5 cut(s) 51, 54, 204, 207, 218
GlaI GCGC 5 cut(s) 57, 146, 148, 278, 365
GluI GCNGC 5 cut(s) 51, 54, 204, 207, 218
GsuI CTGGAG 1 cut(s) 266
HaeII RGCGCY 1 cut(s) 367
HaeIII GGCC 2 cut(s) 209, 503
HapII CCGG 2 cut(s) 40, 200
HgaI GACGC 2 cut(s) 72, 130
HhaI GCGC 5 cut(s) 58, 147, 149, 279, 366
Hin1I GRCGYC 2 cut(s) 83, 228
Hin1II CATG 2 cut(s) 390, 490
Hin6I GCGC 5 cut(s) 56, 145, 147, 277, 364
HinP1I GCGC 5 cut(s) 56, 145, 147, 277, 364
HincII GTYRAC 1 cut(s) 232
HindII GTYRAC 1 cut(s) 232
HinfI GANTC 5 cut(s) 247, 338, 354, 373, 379
HpaII CCGG 2 cut(s) 40, 200
HphI GGTGA 1 cut(s) 214
Hpy166II GTNNAC 1 cut(s) 232
Hpy188I TCNGA 4 cut(s) 99, 188, 258, 378
Hpy188III TCNNGA 4 cut(s) 62, 251, 351, 455
Hpy8I GTNNAC 1 cut(s) 232
Hpy99I CGWCG 2 cut(s) 124, 230
HpyAV CCTTC 1 cut(s) 102
HpyCH4III ACNGT 1 cut(s) 549
HpyCH4IV ACGT 1 cut(s) 228
HpyCH4V TGCA 3 cut(s) 479, 497, 522
HpyF10VI GCNNNNNNNGC 6 cut(s) 144, 170, 467, 476, 515, 569
HpyF3I CTNAG 2 cut(s) 213, 537
HpySE526I ACGT 1 cut(s) 228
Hsp92I GRCGYC 2 cut(s) 83, 228
Hsp92II CATG 2 cut(s) 390, 490
HspAI GCGC 5 cut(s) 56, 145, 147, 277, 364
Kzo9I GATC 5 cut(s) 188, 253, 286, 304, 321
LpnPI CCDG 9 cut(s) 53, 154, 213, 224, 251, 269, 296, 440, 485
Lsp1109I GCAGC 2 cut(s) 37, 215
LweI GCATC 2 cut(s) 484, 559
MaeII ACGT 1 cut(s) 228
MaeIII GTNAC 1 cut(s) 543
MalI GATC 5 cut(s) 190, 255, 288, 306, 323
MbiI CCGCTC 2 cut(s) 220, 344
MboI GATC 5 cut(s) 188, 253, 286, 304, 321
MboII GAAGA 6 cut(s) 16, 36, 166, 168, 271, 439
MfeI CAATTG 1 cut(s) 564
MflI RGATCY 3 cut(s) 188, 286, 321
MluCI AATT 1 cut(s) 564
MlyI GAGTC 2 cut(s) 348, 373
MmeI TCCRAC 1 cut(s) 381
MnlI CCTC 9 cut(s) 99, 120, 220, 275, 280, 283, 290, 335, 514
MseI TTAA 2 cut(s) 369, 576
MspA1I CMGCKG 3 cut(s) 50, 164, 206
MspI CCGG 2 cut(s) 40, 200
MspR9I CCNGG 2 cut(s) 239, 284
MunI CAATTG 1 cut(s) 564
MvaI CCWGG 2 cut(s) 239, 284
MvnI CGCG 4 cut(s) 56, 76, 147, 277
MwoI GCNNNNNNNGC 6 cut(s) 144, 170, 467, 476, 515, 569
NdeII GATC 5 cut(s) 188, 253, 286, 304, 321
NlaIII CATG 2 cut(s) 390, 490
NmeAIII GCCGAG 1 cut(s) 485
NmuCI GTSAC 1 cut(s) 543
NspI RCATGY 1 cut(s) 390
PauI GCGCGC 1 cut(s) 145
PceI AGGCCT 1 cut(s) 503
PfeI GAWTC 3 cut(s) 247, 338, 373
PfoI TCCNGGA 1 cut(s) 282
PkrI GCNGC 5 cut(s) 52, 55, 205, 208, 219
Ple19I CGATCG 1 cut(s) 307
PleI GAGTC 2 cut(s) 348, 373
PpsI GAGTC 2 cut(s) 348, 373
PshAI GACNNNNGTC 1 cut(s) 164
Psp6I CCWGG 2 cut(s) 237, 282
PspGI CCWGG 2 cut(s) 237, 282
PsuI RGATCY 3 cut(s) 188, 286, 321
PteI GCGCGC 1 cut(s) 145
PvuI CGATCG 1 cut(s) 307
PvuII CAGCTG 2 cut(s) 50, 164
SaqAI TTAA 2 cut(s) 369, 576
SatI GCNGC 5 cut(s) 51, 54, 204, 207, 218
Sau3AI GATC 5 cut(s) 188, 253, 286, 304, 321
SchI GAGTC 2 cut(s) 348, 373
ScrFI CCNGG 2 cut(s) 239, 284
SetI ASST 5 cut(s) 13, 52, 166, 231, 267
SfaNI GCATC 2 cut(s) 484, 559
SmlI CTYRAG 3 cut(s) 290, 326, 381
SmoI CTYRAG 3 cut(s) 290, 326, 381
Sse9I AATT 1 cut(s) 564
SseBI AGGCCT 1 cut(s) 503
SsiI CCGC 6 cut(s) 18, 54, 74, 206, 218, 342
StuI AGGCCT 1 cut(s) 503
StyD4I CCNGG 2 cut(s) 237, 282
TaaI ACNGT 1 cut(s) 549
TaiI ACGT 1 cut(s) 231
TaqI TCGA 5 cut(s) 63, 119, 245, 303, 352
TasI AATT 1 cut(s) 564
TauI GCSGC 3 cut(s) 56, 209, 220
TfiI GAWTC 3 cut(s) 247, 338, 373
Tru1I TTAA 2 cut(s) 369, 576
Tru9I TTAA 2 cut(s) 369, 576
TseFI GTSAC 1 cut(s) 543
TseI GCWGC 2 cut(s) 50, 203
Tsp45I GTSAC 1 cut(s) 543
TspDTI ATGAA 4 cut(s) 17, 420, 475, 585
TspGWI ACGGA 1 cut(s) 572
XceI RCATGY 1 cut(s) 390
ZraI GACGTC 1 cut(s) 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.