MD06G1016300.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
Physical Location & Seq
Reverse (-)
2032142 .. 2034419
2278 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1016300.v1.1.491

Sequence Viewer

Length: 177 bp
ATGACCCAAAGGATTACTGAAAGTCGGGAAGCAATGGCGGCTTCATATGCAGAGTTCATGGCAGATGCACAGACCACCGCTTCTCGTGCTTGCAAAACATCAATTGCTGAGCTTTCGCAGTCCTTTGAGAAACAAATTGATGCTCTTCGCAGCCGTTATGGCATTTCAACAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

59

Amino Acids

6.43

Weight (kDa)

6.13

Isoelectric Point (pI)

58.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013635)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 38, 78
AgsI TTSAA 1 cut(s) 168
AluBI AGCT 1 cut(s) 112
AluI AGCT 1 cut(s) 112
ApeKI GCWGC 1 cut(s) 150
BauI CACGAG 1 cut(s) 84
BbvI GCAGC 1 cut(s) 162
BceAI ACGGC 1 cut(s) 138
BglI GCCNNNNNGGC 1 cut(s) 159
BisI GCNGC 2 cut(s) 39, 151
BlpI GCTNAGC 1 cut(s) 108
BlsI GCNGC 2 cut(s) 40, 152
BmsI GCATC 2 cut(s) 55, 130
Bpu1102I GCTNAGC 1 cut(s) 108
Bse3DI GCAATG 1 cut(s) 39
BseMI GCAATG 1 cut(s) 39
BseMII CTCAG 1 cut(s) 99
BseXI GCAGC 1 cut(s) 162
Bsp1720I GCTNAGC 1 cut(s) 108
BspACI CCGC 2 cut(s) 38, 78
BspCNI CTCAG 1 cut(s) 100
BspQI GCTCTTC 1 cut(s) 150
BsrDI GCAATG 1 cut(s) 39
BssSI CACGAG 1 cut(s) 84
Bst2BI CACGAG 1 cut(s) 84
Bst6I CTCTTC 1 cut(s) 150
BstC8I GCNNGC 1 cut(s) 91
BstDEI CTNAG 1 cut(s) 108
BstMWI GCNNNNNNNGC 4 cut(s) 38, 47, 86, 159
BstV1I GCAGC 1 cut(s) 162
Cac8I GCNNGC 1 cut(s) 91
CviAII CATG 1 cut(s) 58
CviJI RGCY 3 cut(s) 41, 112, 153
CviKI_1 RGCY 3 cut(s) 41, 112, 153
DdeI CTNAG 1 cut(s) 108
Eam1104I CTCTTC 1 cut(s) 150
EarI CTCTTC 1 cut(s) 150
FaeI CATG 1 cut(s) 61
FaiI YATR 4 cut(s) 46, 48, 59, 159
FatI CATG 1 cut(s) 57
FauNDI CATATG 1 cut(s) 46
Fnu4HI GCNGC 2 cut(s) 39, 151
Fsp4HI GCNGC 2 cut(s) 39, 151
GluI GCNGC 2 cut(s) 39, 151
Hin1II CATG 1 cut(s) 61
Hpy188III TCNNGA 1 cut(s) 26
HpyCH4V TGCA 3 cut(s) 50, 68, 93
HpyF10VI GCNNNNNNNGC 4 cut(s) 38, 47, 86, 159
HpyF3I CTNAG 1 cut(s) 108
Hsp92II CATG 1 cut(s) 61
LguI GCTCTTC 1 cut(s) 150
Lsp1109I GCAGC 1 cut(s) 162
LweI GCATC 2 cut(s) 55, 130
MboII GAAGA 1 cut(s) 137
MfeI CAATTG 1 cut(s) 102
MluCI AATT 3 cut(s) 102, 135, 172
MunI CAATTG 1 cut(s) 102
MwoI GCNNNNNNNGC 4 cut(s) 38, 47, 86, 159
NdeI CATATG 1 cut(s) 46
NlaIII CATG 1 cut(s) 61
PciSI GCTCTTC 1 cut(s) 150
PkrI GCNGC 2 cut(s) 40, 152
SapI GCTCTTC 1 cut(s) 150
SatI GCNGC 2 cut(s) 39, 151
SetI ASST 1 cut(s) 114
SfaNI GCATC 2 cut(s) 55, 130
SgeI CNNG 5 cut(s) 38, 70, 96, 98, 102
Sse9I AATT 3 cut(s) 102, 135, 172
SsiI CCGC 2 cut(s) 38, 78
TasI AATT 3 cut(s) 102, 135, 172
TauI GCSGC 1 cut(s) 41
TseI GCWGC 1 cut(s) 150
TspDTI ATGAA 2 cut(s) 33, 46
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.