FvH4_5g24040

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0013635
Physical Location & Seq
Reverse (-)
15291321 .. 15294420
3100 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g24040.t1

Sequence Viewer

Length: 603 bp
ATGAAGAAAGGTTCAGGCGGTGGAAGACGAAGCACTCGCCGGAGTTCAGCTGCGGCGCTACTCGAAACGCCACCGCGAGTGGCGTCTCCTCCTTCTCCCAACCACTCTCCTCCCAAATCGACGCTGCTCAACAACAGCAACAAGCGCACCAAGAAGATGACCGCGGCAAGGGCTTCTTCCGTCATCGGATCTCCGTCTCCGGCAGCCTCCAAGCCGCTCGCCGACGCCAACGGCCTGGCTTCGATTCCCGATCTGAAGAACCTCGCCTCGTCGCGCCTCCAAGATCTCAAGCAACATATCGATCGCTCTCACACTGAGATTCTCAAGGATTGCGATTCCGCTCATTCTCGACTCCACAAGCGCTTCAAGATTCAGACTCAAGCATGTCAGCAAATGTTGGATGAAGCAGACAAGGAATACAAGAAGATGACCCAAAGGACTACTGAAAGTCGGGAAGCAATGATGGCTTCTTATGCAGAGTTCATGGCAGATGCACAGGCCTCGGCTTCTCGTGCTTGCAAAACATCCATTGCTGAGTTGTCACAGTCCTTTGAGAAAGCAATTGATGCTCTTAACATCCGTTATGGGATTTCATCCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

201

Amino Acids

21.72

Weight (kDa)

9.97

Isoelectric Point (pI)

72.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013635)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08760 FvH4_5g24040
malus_domestica MD06G1015900.v1.1 MD06G1016300.v1.1 MD06G1016600.v1.1
prunus_persica Prupe.5G019800_v2.0.a1
pyrus_communis pycom06g01280
rosa_chinensis RchiOBHm_Chr7g0213521
rosa_laevigata RLG00000002798
rosa_multiflora Rmu_sc0010076.1_g000002
rosa_roxburghii Rroxscaffold_3G00245810
rosa_rugosa Rorug07G0142700
rosa_samantha Rh7AG275900 Rh7BG270300 Rh7CG294800 Rh7DG282500
rosa_wichuraiana Rw0G023480 Rw7G023840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 217, 341
AccII CGCG 3 cut(s) 76, 164, 274
AciI CCGC 7 cut(s) 18, 53, 74, 162, 164, 215, 339
AclWI GGATC 1 cut(s) 196
AcuI CTGAAG 1 cut(s) 275
AcyI GRCGYC 2 cut(s) 83, 225
AfeI AGCGCT 1 cut(s) 362
AfiI CCNNNNNNNGG 1 cut(s) 168
AgsI TTSAA 1 cut(s) 367
AjnI CCWGG 1 cut(s) 234
AluBI AGCT 1 cut(s) 50
AluI AGCT 1 cut(s) 50
Alw26I GTCTC 2 cut(s) 90, 201
AlwI GGATC 1 cut(s) 196
Aor51HI AGCGCT 1 cut(s) 362
AoxI GGCC 2 cut(s) 232, 498
ApeKI GCWGC 3 cut(s) 50, 124, 203
AspLEI GCGC 4 cut(s) 58, 147, 276, 363
BauI CACGAG 1 cut(s) 510
BbsI GAAGAC 1 cut(s) 31
BbvI GCAGC 3 cut(s) 37, 111, 215
BccI CCATC 1 cut(s) 457
BceAI ACGGC 1 cut(s) 247
BcgI CGANNNNNNTGC 2 cut(s) 483, 517
BciT130I CCWGG 1 cut(s) 236
BcoDI GTCTC 2 cut(s) 90, 201
BfoI RGCGCY 2 cut(s) 59, 364
BglII AGATCT 1 cut(s) 283
BisI GCNGC 6 cut(s) 51, 54, 125, 165, 204, 215
BlsI GCNGC 6 cut(s) 52, 55, 126, 166, 205, 216
Bme1390I CCNGG 1 cut(s) 236
BmrFI CCNGG 1 cut(s) 236
BmsI GCATC 2 cut(s) 481, 556
BpiI GAAGAC 1 cut(s) 31
BpuEI CTTGAG 3 cut(s) 272, 308, 363
Bsa29I ATCGAT 1 cut(s) 300
BsaHI GRCGYC 2 cut(s) 83, 225
BsaJI CCNNGG 2 cut(s) 162, 501
Bsc4I CCNNNNNNNGG 1 cut(s) 168
Bse3DI GCAATG 2 cut(s) 465, 528
BseBI CCWGG 1 cut(s) 236
BseCI ATCGAT 1 cut(s) 300
BseDI CCNNGG 2 cut(s) 162, 501
BseGI GGATG 4 cut(s) 406, 524, 576, 593
BseLI CCNNNNNNNGG 1 cut(s) 168
BseMI GCAATG 2 cut(s) 465, 528
BseMII CTCAG 2 cut(s) 306, 525
BseRI GAGGAG 2 cut(s) 78, 99
BseXI GCAGC 3 cut(s) 37, 111, 215
Bsh1236I CGCG 3 cut(s) 76, 164, 274
Bsh1285I CGRYCG 1 cut(s) 304
BshFI GGCC 2 cut(s) 234, 500
BshVI ATCGAT 1 cut(s) 300
BsiEI CGRYCG 1 cut(s) 304
BsiSI CCGG 2 cut(s) 40, 200
BslI CCNNNNNNNGG 1 cut(s) 168
BsmAI GTCTC 2 cut(s) 90, 201
BsmBI CGTCTC 2 cut(s) 90, 201
BsnI GGCC 2 cut(s) 234, 500
Bsp143I GATC 4 cut(s) 188, 250, 283, 301
BspACI CCGC 7 cut(s) 18, 53, 74, 162, 164, 215, 339
BspANI GGCC 2 cut(s) 234, 500
BspCNI CTCAG 2 cut(s) 307, 526
BspDI ATCGAT 1 cut(s) 300
BspFNI CGCG 3 cut(s) 76, 164, 274
BspPI GGATC 1 cut(s) 196
BsrBI CCGCTC 2 cut(s) 217, 341
BsrDI GCAATG 2 cut(s) 465, 528
BssECI CCNNGG 2 cut(s) 162, 501
BssMI GATC 4 cut(s) 188, 250, 283, 301
BssNI GRCGYC 2 cut(s) 83, 225
BssSI CACGAG 1 cut(s) 510
Bst2BI CACGAG 1 cut(s) 510
Bst2UI CCWGG 1 cut(s) 236
Bst4CI ACNGT 1 cut(s) 546
BstACI GRCGYC 2 cut(s) 83, 225
BstAPI GCANNNNNTGC 1 cut(s) 566
BstC8I GCNNGC 2 cut(s) 219, 517
BstDEI CTNAG 2 cut(s) 315, 534
BstDSI CCRYGG 1 cut(s) 162
BstF5I GGATG 4 cut(s) 406, 524, 576, 593
BstFNI CGCG 3 cut(s) 76, 164, 274
BstH2I RGCGCY 2 cut(s) 59, 364
BstHHI GCGC 4 cut(s) 58, 147, 276, 363
BstKTI GATC 4 cut(s) 191, 253, 286, 304
BstMAI GTCTC 2 cut(s) 90, 201
BstMBI GATC 4 cut(s) 188, 250, 283, 301
BstMCI CGRYCG 1 cut(s) 304
BstMWI GCNNNNNNNGC 6 cut(s) 144, 170, 464, 473, 512, 566
BstNI CCWGG 1 cut(s) 236
BstNSI RCATGY 1 cut(s) 387
BstSCI CCNGG 1 cut(s) 234
BstUI CGCG 3 cut(s) 76, 164, 274
BstV1I GCAGC 3 cut(s) 37, 111, 215
BstV2I GAAGAC 1 cut(s) 31
BstX2I RGATCY 2 cut(s) 188, 283
BstXI CCANNNNNNTGG 1 cut(s) 235
BstYI RGATCY 2 cut(s) 188, 283
Bsu15I ATCGAT 1 cut(s) 300
BsuRI GGCC 2 cut(s) 234, 500
BsuTUI ATCGAT 1 cut(s) 300
BtgI CCRYGG 1 cut(s) 162
BtsCI GGATG 4 cut(s) 406, 524, 576, 593
BtsIMutI CAGTG 1 cut(s) 312
Cac8I GCNNGC 2 cut(s) 219, 517
CfoI GCGC 4 cut(s) 58, 147, 276, 363
Cfr42I CCGCGG 1 cut(s) 165
ClaI ATCGAT 1 cut(s) 300
CseI GACGC 3 cut(s) 72, 130, 233
CviAII CATG 2 cut(s) 384, 484
CviJI RGCY 9 cut(s) 50, 173, 206, 214, 234, 239, 467, 500, 506
CviKI_1 RGCY 9 cut(s) 50, 173, 206, 214, 234, 239, 467, 500, 506
DdeI CTNAG 2 cut(s) 315, 534
DpnI GATC 4 cut(s) 190, 252, 285, 303
DpnII GATC 4 cut(s) 188, 250, 283, 301
Eco147I AGGCCT 1 cut(s) 500
Eco47III AGCGCT 1 cut(s) 362
Eco57I CTGAAG 1 cut(s) 275
EcoRII CCWGG 1 cut(s) 234
Esp3I CGTCTC 2 cut(s) 90, 201
FaeI CATG 2 cut(s) 387, 487
FaiI YATR 5 cut(s) 297, 385, 474, 485, 585
FalI AAGNNNNNCTT 2 cut(s) 160, 192
FatI CATG 2 cut(s) 383, 483
Fnu4HI GCNGC 6 cut(s) 51, 54, 125, 165, 204, 215
FokI GGATG 4 cut(s) 413, 511, 563, 580
Fsp4HI GCNGC 6 cut(s) 51, 54, 125, 165, 204, 215
GlaI GCGC 4 cut(s) 57, 146, 275, 362
GluI GCNGC 6 cut(s) 51, 54, 125, 165, 204, 215
HaeII RGCGCY 2 cut(s) 59, 364
HaeIII GGCC 2 cut(s) 234, 500
HapII CCGG 2 cut(s) 40, 200
HgaI GACGC 3 cut(s) 72, 130, 233
HhaI GCGC 4 cut(s) 58, 147, 276, 363
Hin1I GRCGYC 2 cut(s) 83, 225
Hin1II CATG 2 cut(s) 387, 487
Hin6I GCGC 4 cut(s) 56, 145, 274, 361
HinP1I GCGC 4 cut(s) 56, 145, 274, 361
HinfI GANTC 6 cut(s) 244, 319, 335, 351, 370, 376
HpaII CCGG 2 cut(s) 40, 200
Hpy188I TCNGA 3 cut(s) 188, 255, 375
Hpy188III TCNNGA 4 cut(s) 248, 348, 367, 452
Hpy99I CGWCG 3 cut(s) 124, 227, 274
HpyAV CCTTC 1 cut(s) 102
HpyCH4III ACNGT 1 cut(s) 546
HpyCH4V TGCA 3 cut(s) 476, 494, 519
HpyF10VI GCNNNNNNNGC 6 cut(s) 144, 170, 464, 473, 512, 566
HpyF3I CTNAG 2 cut(s) 315, 534
Hsp92I GRCGYC 2 cut(s) 83, 225
Hsp92II CATG 2 cut(s) 387, 487
HspAI GCGC 4 cut(s) 56, 145, 274, 361
KspI CCGCGG 1 cut(s) 165
Kzo9I GATC 4 cut(s) 188, 250, 283, 301
LpnPI CCDG 5 cut(s) 53, 213, 221, 248, 482
Lsp1109I GCAGC 3 cut(s) 37, 111, 215
LweI GCATC 2 cut(s) 481, 556
MaeIII GTNAC 1 cut(s) 540
MalI GATC 4 cut(s) 190, 252, 285, 303
MbiI CCGCTC 2 cut(s) 217, 341
MboI GATC 4 cut(s) 188, 250, 283, 301
MboII GAAGA 6 cut(s) 16, 36, 166, 168, 268, 436
MfeI CAATTG 1 cut(s) 561
MflI RGATCY 2 cut(s) 188, 283
MluCI AATT 1 cut(s) 561
MlyI GAGTC 2 cut(s) 345, 370
MmeI TCCRAC 1 cut(s) 378
MnlI CCTC 7 cut(s) 99, 120, 217, 272, 277, 287, 511
MseI TTAA 1 cut(s) 573
MspA1I CMGCKG 2 cut(s) 50, 164
MspI CCGG 2 cut(s) 40, 200
MspR9I CCNGG 1 cut(s) 236
MunI CAATTG 1 cut(s) 561
MvaI CCWGG 1 cut(s) 236
MvnI CGCG 3 cut(s) 76, 164, 274
MwoI GCNNNNNNNGC 6 cut(s) 144, 170, 464, 473, 512, 566
NdeII GATC 4 cut(s) 188, 250, 283, 301
NlaIII CATG 2 cut(s) 387, 487
NmeAIII GCCGAG 1 cut(s) 482
NmuCI GTSAC 1 cut(s) 540
NspI RCATGY 1 cut(s) 387
PceI AGGCCT 1 cut(s) 500
PfeI GAWTC 4 cut(s) 244, 319, 335, 370
PkrI GCNGC 6 cut(s) 52, 55, 126, 166, 205, 216
Ple19I CGATCG 1 cut(s) 304
PleI GAGTC 2 cut(s) 345, 370
PpsI GAGTC 2 cut(s) 345, 370
Psp6I CCWGG 1 cut(s) 234
PspGI CCWGG 1 cut(s) 234
PsuI RGATCY 2 cut(s) 188, 283
PvuI CGATCG 1 cut(s) 304
PvuII CAGCTG 1 cut(s) 50
SacII CCGCGG 1 cut(s) 165
SaqAI TTAA 1 cut(s) 573
SatI GCNGC 6 cut(s) 51, 54, 125, 165, 204, 215
Sau3AI GATC 4 cut(s) 188, 250, 283, 301
SchI GAGTC 2 cut(s) 345, 370
ScrFI CCNGG 1 cut(s) 236
SetI ASST 3 cut(s) 13, 52, 264
SfaNI GCATC 2 cut(s) 481, 556
Sfr303I CCGCGG 1 cut(s) 165
SgrBI CCGCGG 1 cut(s) 165
SmlI CTYRAG 3 cut(s) 287, 323, 378
SmoI CTYRAG 3 cut(s) 287, 323, 378
Sse9I AATT 1 cut(s) 561
SseBI AGGCCT 1 cut(s) 500
SsiI CCGC 7 cut(s) 18, 53, 74, 162, 164, 215, 339
StuI AGGCCT 1 cut(s) 500
StyD4I CCNGG 1 cut(s) 234
TaaI ACNGT 1 cut(s) 546
TaqI TCGA 5 cut(s) 63, 119, 242, 300, 349
TasI AATT 1 cut(s) 561
TauI GCSGC 3 cut(s) 56, 167, 217
TfiI GAWTC 4 cut(s) 244, 319, 335, 370
Tru1I TTAA 1 cut(s) 573
Tru9I TTAA 1 cut(s) 573
TscAI CASTG 1 cut(s) 319
TseFI GTSAC 1 cut(s) 540
TseI GCWGC 3 cut(s) 50, 124, 203
Tsp45I GTSAC 1 cut(s) 540
TspDTI ATGAA 4 cut(s) 17, 417, 472, 582
TspGWI ACGGA 3 cut(s) 169, 183, 569
TspRI CASTG 1 cut(s) 319
XceI RCATGY 1 cut(s) 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.