Prupe.5G019800_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0013635
Physical Location & Seq
Forward (+)
2183309 .. 2186596
3288 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G019800.1

Sequence Viewer

Length: 606 bp
ATGAAAAGAGGCGGTGGAAGTGGAAGTCGGAGTCGGAGGTTTTCAGCTGCGAAGTTTCTGGAAACGCCATTTCCGTCGTTGCCAGTAGCTTCTTCTCCTGAAAACCAAACTACTCCCAAATCGGCGACTTTCAATAACAGCAGCAAGCGCAAGAGGACGACTGTCACTGTCGGAGCAGCCATCGGAGGACCTTCAGCCTCTGTGGCAGCGCTCATGGAATCGCCTCAAACCAATAGTTTGGCTTCGATTCCTGATCTCAAGCACCTCGCCTCCTCTCGCCTTCGCGATCTCAAGCTTCACATCGATCGCTCTCACTCTGAGATCCTCAAGGATTTCGATTCCTCTCATTCTCGCCTCCACAAGCGGTTCAAGATTCAAAGTCAAGCATGTCAGCAAGTGCTGGATGAGACAGACAAGGAATACAAGAAGATGACCCAAAGGATTACCGAAAGTCGGGAAGCAATGATGGCTTCATATGCAGAGTTCATGGCAGATGCACAGACCACTGCTTCTCGTGCTTGCAAAACATCCATCACTGAGTTTTCACAGTCCTTTGAGAAAGCAATTGATGCTCTTCGGAGCCGCTACGGGATTTCAACAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

202

Amino Acids

22.14

Weight (kDa)

9.91

Isoelectric Point (pI)

68.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013635)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08760 FvH4_5g24040
malus_domestica MD06G1015900.v1.1 MD06G1016300.v1.1 MD06G1016600.v1.1
prunus_persica Prupe.5G019800_v2.0.a1
pyrus_communis pycom06g01280
rosa_chinensis RchiOBHm_Chr7g0213521
rosa_laevigata RLG00000002798
rosa_multiflora Rmu_sc0010076.1_g000002
rosa_roxburghii Rroxscaffold_3G00245810
rosa_rugosa Rorug07G0142700
rosa_samantha Rh7AG275900 Rh7BG270300 Rh7CG294800 Rh7DG282500
rosa_wichuraiana Rw0G023480 Rw7G023840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 285
AciI CCGC 3 cut(s) 12, 364, 583
AclWI GGATC 1 cut(s) 316
AcuI CTGAAG 1 cut(s) 177
AfeI AGCGCT 1 cut(s) 210
AfiI CCNNNNNNNGG 1 cut(s) 453
AgsI TTSAA 4 cut(s) 133, 370, 377, 597
AluBI AGCT 3 cut(s) 47, 89, 295
AluI AGCT 3 cut(s) 47, 89, 295
Alw26I GTCTC 1 cut(s) 401
AlwI GGATC 1 cut(s) 316
AlwNI CAGNNNCTG 1 cut(s) 200
Aor51HI AGCGCT 1 cut(s) 210
ApeKI GCWGC 4 cut(s) 47, 141, 176, 206
AspLEI GCGC 2 cut(s) 150, 211
AspS9I GGNCC 1 cut(s) 188
AvaII GGWCC 1 cut(s) 188
BauI CACGAG 1 cut(s) 513
BbvI GCAGC 4 cut(s) 34, 153, 188, 218
BccI CCATC 3 cut(s) 188, 460, 539
BcoDI GTCTC 1 cut(s) 401
BfoI RGCGCY 1 cut(s) 212
BglI GCCNNNNNGGC 1 cut(s) 203
BisI GCNGC 5 cut(s) 48, 142, 177, 207, 583
BlsI GCNGC 5 cut(s) 49, 143, 178, 208, 584
Bme18I GGWCC 1 cut(s) 188
BmgT120I GGNCC 1 cut(s) 188
BmiI GGNNCC 1 cut(s) 581
BmsI GCATC 2 cut(s) 484, 559
BoxI GACNNNNGTC 1 cut(s) 161
BpuEI CTTGAG 3 cut(s) 242, 275, 311
Bsa29I ATCGAT 1 cut(s) 303
BsaXI ACNNNNNCTCC 2 cut(s) 254, 284
Bsc4I CCNNNNNNNGG 1 cut(s) 453
Bse1I ACTGG 1 cut(s) 83
Bse3DI GCAATG 1 cut(s) 468
BseCI ATCGAT 1 cut(s) 303
BseGI GGATG 2 cut(s) 409, 527
BseLI CCNNNNNNNGG 1 cut(s) 453
BseMI GCAATG 1 cut(s) 468
BseMII CTCAG 2 cut(s) 309, 528
BseNI ACTGG 1 cut(s) 83
BseRI GAGGAG 1 cut(s) 262
BseXI GCAGC 4 cut(s) 34, 153, 188, 218
Bsh1236I CGCG 1 cut(s) 285
Bsh1285I CGRYCG 1 cut(s) 307
BshVI ATCGAT 1 cut(s) 303
BsiEI CGRYCG 1 cut(s) 307
BslI CCNNNNNNNGG 1 cut(s) 453
BsmAI GTCTC 1 cut(s) 401
Bsp143I GATC 4 cut(s) 253, 286, 304, 321
Bsp68I TCGCGA 1 cut(s) 285
BspACI CCGC 3 cut(s) 12, 364, 583
BspCNI CTCAG 2 cut(s) 310, 529
BspDI ATCGAT 1 cut(s) 303
BspFNI CGCG 1 cut(s) 285
BspLI GGNNCC 1 cut(s) 581
BspPI GGATC 1 cut(s) 316
BspQI GCTCTTC 1 cut(s) 579
BsrDI GCAATG 1 cut(s) 468
BsrI ACTGG 1 cut(s) 83
BssMI GATC 4 cut(s) 253, 286, 304, 321
BssSI CACGAG 1 cut(s) 513
Bst2BI CACGAG 1 cut(s) 513
Bst4CI ACNGT 3 cut(s) 163, 169, 549
Bst6I CTCTTC 1 cut(s) 579
BstAPI GCANNNNNTGC 1 cut(s) 569
BstC8I GCNNGC 2 cut(s) 146, 520
BstDEI CTNAG 2 cut(s) 318, 537
BstF5I GGATG 2 cut(s) 409, 527
BstFNI CGCG 1 cut(s) 285
BstH2I RGCGCY 1 cut(s) 212
BstHHI GCGC 2 cut(s) 150, 211
BstKTI GATC 4 cut(s) 256, 289, 307, 324
BstMAI GTCTC 1 cut(s) 401
BstMBI GATC 4 cut(s) 253, 286, 304, 321
BstMCI CGRYCG 1 cut(s) 307
BstMWI GCNNNNNNNGC 6 cut(s) 147, 203, 467, 476, 515, 569
BstNSI RCATGY 1 cut(s) 390
BstPAI GACNNNNGTC 1 cut(s) 161
BstUI CGCG 1 cut(s) 285
BstV1I GCAGC 4 cut(s) 34, 153, 188, 218
BstX2I RGATCY 1 cut(s) 321
BstXI CCANNNNNNTGG 1 cut(s) 238
BstYI RGATCY 1 cut(s) 321
Bsu15I ATCGAT 1 cut(s) 303
BsuTUI ATCGAT 1 cut(s) 303
BtsCI GGATG 2 cut(s) 409, 527
BtsI GCAGTG 1 cut(s) 504
BtsIMutI CAGTG 3 cut(s) 165, 504, 534
BtuMI TCGCGA 1 cut(s) 285
Cac8I GCNNGC 2 cut(s) 146, 520
CaiI CAGNNNCTG 1 cut(s) 200
CfoI GCGC 2 cut(s) 150, 211
Cfr13I GGNCC 1 cut(s) 188
ClaI ATCGAT 1 cut(s) 303
CviAII CATG 3 cut(s) 214, 387, 487
CviJI RGCY 8 cut(s) 47, 89, 179, 197, 242, 295, 470, 582
CviKI_1 RGCY 8 cut(s) 47, 89, 179, 197, 242, 295, 470, 582
DdeI CTNAG 2 cut(s) 318, 537
DpnI GATC 4 cut(s) 255, 288, 306, 323
DpnII GATC 4 cut(s) 253, 286, 304, 321
Eam1104I CTCTTC 1 cut(s) 579
EarI CTCTTC 1 cut(s) 579
Eco47I GGWCC 1 cut(s) 188
Eco47III AGCGCT 1 cut(s) 210
Eco57I CTGAAG 1 cut(s) 177
EcoO109I RGGNCCY 1 cut(s) 188
FaeI CATG 3 cut(s) 217, 390, 490
FaiI YATR 5 cut(s) 215, 388, 475, 477, 488
FatI CATG 3 cut(s) 213, 386, 486
FauNDI CATATG 1 cut(s) 475
Fnu4HI GCNGC 5 cut(s) 48, 142, 177, 207, 583
FokI GGATG 2 cut(s) 416, 514
Fsp4HI GCNGC 5 cut(s) 48, 142, 177, 207, 583
GlaI GCGC 2 cut(s) 149, 210
GluI GCNGC 5 cut(s) 48, 142, 177, 207, 583
HaeII RGCGCY 1 cut(s) 212
HhaI GCGC 2 cut(s) 150, 211
Hin1II CATG 3 cut(s) 217, 390, 490
Hin6I GCGC 2 cut(s) 148, 209
HinP1I GCGC 2 cut(s) 148, 209
HindIII AAGCTT 1 cut(s) 293
HinfI GANTC 5 cut(s) 31, 218, 247, 338, 373
Hpy188I TCNGA 6 cut(s) 30, 36, 173, 185, 319, 579
Hpy188III TCNNGA 6 cut(s) 59, 98, 251, 284, 370, 455
Hpy99I CGWCG 1 cut(s) 79
HpyAV CCTTC 2 cut(s) 201, 290
HpyCH4III ACNGT 3 cut(s) 163, 169, 549
HpyCH4V TGCA 3 cut(s) 479, 497, 522
HpyF10VI GCNNNNNNNGC 6 cut(s) 147, 203, 467, 476, 515, 569
HpyF3I CTNAG 2 cut(s) 318, 537
Hsp92II CATG 3 cut(s) 217, 390, 490
HspAI GCGC 2 cut(s) 148, 209
Kzo9I GATC 4 cut(s) 253, 286, 304, 321
LguI GCTCTTC 1 cut(s) 579
LmnI GCTCC 2 cut(s) 173, 579
LpnPI CCDG 5 cut(s) 44, 96, 111, 264, 386
Lsp1109I GCAGC 4 cut(s) 34, 153, 188, 218
LweI GCATC 2 cut(s) 484, 559
MaeIII GTNAC 1 cut(s) 163
MalI GATC 4 cut(s) 255, 288, 306, 323
MboI GATC 4 cut(s) 253, 286, 304, 321
MboII GAAGA 3 cut(s) 84, 439, 566
MfeI CAATTG 1 cut(s) 564
MflI RGATCY 1 cut(s) 321
MluCI AATT 2 cut(s) 564, 601
MlyI GAGTC 1 cut(s) 40
MmeI TCCRAC 3 cut(s) 8, 14, 151
MspA1I CMGCKG 1 cut(s) 47
MunI CAATTG 1 cut(s) 564
MvnI CGCG 1 cut(s) 285
MwoI GCNNNNNNNGC 6 cut(s) 147, 203, 467, 476, 515, 569
NdeI CATATG 1 cut(s) 475
NdeII GATC 4 cut(s) 253, 286, 304, 321
NlaIII CATG 3 cut(s) 217, 390, 490
NlaIV GGNNCC 1 cut(s) 581
NmuCI GTSAC 1 cut(s) 163
NruI TCGCGA 1 cut(s) 285
NspI RCATGY 1 cut(s) 390
PciSI GCTCTTC 1 cut(s) 579
PcsI WCGNNNNNNNCGW 1 cut(s) 71
PfeI GAWTC 4 cut(s) 218, 247, 338, 373
PkrI GCNGC 5 cut(s) 49, 143, 178, 208, 584
Ple19I CGATCG 1 cut(s) 307
PleI GAGTC 1 cut(s) 39
PpsI GAGTC 1 cut(s) 39
PpuMI RGGWCCY 1 cut(s) 188
PshAI GACNNNNGTC 1 cut(s) 161
Psp5II RGGWCCY 1 cut(s) 188
PspN4I GGNNCC 1 cut(s) 581
PspPI GGNCC 1 cut(s) 188
PspPPI RGGWCCY 1 cut(s) 188
PstNI CAGNNNCTG 1 cut(s) 200
PsuI RGATCY 1 cut(s) 321
PvuI CGATCG 1 cut(s) 307
PvuII CAGCTG 1 cut(s) 47
RruI TCGCGA 1 cut(s) 285
SapI GCTCTTC 1 cut(s) 579
SatI GCNGC 5 cut(s) 48, 142, 177, 207, 583
Sau3AI GATC 4 cut(s) 253, 286, 304, 321
Sau96I GGNCC 1 cut(s) 188
SchI GAGTC 1 cut(s) 40
SetI ASST 6 cut(s) 41, 49, 91, 193, 267, 297
SfaNI GCATC 2 cut(s) 484, 559
SinI GGWCC 1 cut(s) 188
SmlI CTYRAG 3 cut(s) 257, 290, 326
SmoI CTYRAG 3 cut(s) 257, 290, 326
Sse9I AATT 2 cut(s) 564, 601
SsiI CCGC 3 cut(s) 12, 364, 583
TaaI ACNGT 3 cut(s) 163, 169, 549
TaqI TCGA 3 cut(s) 245, 303, 336
TasI AATT 2 cut(s) 564, 601
TauI GCSGC 1 cut(s) 585
TfiI GAWTC 4 cut(s) 218, 247, 338, 373
TscAI CASTG 3 cut(s) 172, 511, 541
TseFI GTSAC 1 cut(s) 163
TseI GCWGC 4 cut(s) 47, 141, 176, 206
Tsp45I GTSAC 1 cut(s) 163
TspDTI ATGAA 3 cut(s) 17, 462, 475
TspGWI ACGGA 1 cut(s) 63
TspRI CASTG 3 cut(s) 172, 511, 541
VpaK11BI GGWCC 1 cut(s) 188
XceI RCATGY 1 cut(s) 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.