Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0013636

Physical Location & Seq

Genomic Coordinates Forward (+)

5459765 .. 5461672

Gene Structure 1908 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g09340.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGAACTGTGTGGAAAAACCATAAATAGAGAAAACAGCTCTATGTGTATGGATCAGGATATCTCGGAGGTGAACCATGGCACAAGCCAGAGCTCGAGGACGAGAAGCCCTGCCCCGTTTTTGTCTAAAACGTACGATTTGCTAGAGGAAGAAGAAGAGGAAGACAAAGATGGTGGCGGTAGGAGATCGATTGTGTCATGGAACGGAGAAGGAAATGGTTTTATAGTATGGTCTCCAGCTGAGTTCTCAGAGCTCTTGTTGCCTAAATACTTCAAGCACAATAACTTCTCCAGCTTTATTCGTCAGCTTAATACCTATGGATTCAAGAAAACATCACCAAAACGATGGGAGTTCAAACACGAGAAGTTCCAGAAGGGCTGCAGGCATATGCTAGTGGAGATCAATCGAAAGAAATGCGAACCGAGCGCTTTTCCGGTGTACCTAAAGGCTTCGGAAGAGAGCACTAGTGCTACTGGCGGGATTAACCGAAGCATGAGCAATGCAGCAGAACAAGAGAATCAGTCTCTGCTGCTAATGGAGGAGAACAAGAACCTAAGGAAGCAGAAAATGGAGCTTCAGATGCAACTTTCTCAGTTCAAAGCACTAGAAACTAAGCTGTTGGATTGTGTGGGTCAGTTTATGCAAGACCAACACAATCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

221

Amino Acids

25.41

Weight (kDa)

6.97

Isoelectric Point (pI)

68.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSF_DNA-bind	PF00447	40 - 137	1.2e-26	HSF-type DNA-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013636)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g09340
malus_domestica	MD00G1095900.v1.1 MD05G1313700.v1.1
prunus_persica	Prupe.4G046000_v2.0.a1 Prupe.4G046000_v2.0.a1
pyrus_communis	pycom05g29150 pycom10g24740
rosa_chinensis	RchiOBHm_Chr5g0008251
rosa_laevigata	RLG00000031554
rosa_multiflora	Rmu_sc0001387.1_g000003 Rmu_sc0028309.1_g000001
rosa_roxburghii	Rroxscaffold_1G00068230
rosa_rugosa	Rorug04G0434700
rosa_samantha	Rh5AG063100 Rh5BG059300 Rh5CG070000 Rh5DG058900
rosa_wichuraiana	Rw5G005790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	177, 477
AclWI	GGATC	1 cut(s)	60
AcuI	CTGAAG	1 cut(s)	560
AfaI	GTAC	2 cut(s)	134, 440
AfeI	AGCGCT	1 cut(s)	427
AgsI	TTSAA	4 cut(s)	274, 325, 355, 598
AhlI	ACTAGT	1 cut(s)	464
AluBI	AGCT	8 cut(s)	39, 93, 239, 253, 294, 307, 574, 616
AluI	AGCT	8 cut(s)	39, 93, 239, 253, 294, 307, 574, 616
Alw21I	GWGCWC	3 cut(s)	95, 255, 464
Alw26I	GTCTC	2 cut(s)	237, 528
AlwI	GGATC	1 cut(s)	60
AlwNI	CAGNNNCTG	1 cut(s)	526
Ama87I	CYCGRG	1 cut(s)	94
Aor51HI	AGCGCT	1 cut(s)	427
ApeKI	GCWGC	3 cut(s)	378, 503, 529
AspLEI	GCGC	1 cut(s)	428
AsuHPI	GGTGA	2 cut(s)	82, 327
AvaI	CYCGRG	1 cut(s)	94
AxyI	CCTNAGG	1 cut(s)	554
BanII	GRGCYC	2 cut(s)	95, 255
BauI	CACGAG	1 cut(s)	359
BbsI	GAAGAC	1 cut(s)	168
Bbv12I	GWGCWC	3 cut(s)	95, 255, 464
BbvI	GCAGC	3 cut(s)	365, 515, 516
BccI	CCATC	2 cut(s)	164, 339
BcgI	CGANNNNNNTGC	2 cut(s)	396, 430
BcoDI	GTCTC	2 cut(s)	237, 528
BcuI	ACTAGT	1 cut(s)	464
BfaI	CTAG	4 cut(s)	143, 392, 465, 605
BfmI	CTRYAG	1 cut(s)	379
BfoI	RGCGCY	1 cut(s)	429
BisI	GCNGC	3 cut(s)	379, 504, 530
BlsI	GCNGC	3 cut(s)	380, 505, 531
BmeT110I	CYCGRG	1 cut(s)	94
BmsI	GCATC	1 cut(s)	570
BpiI	GAAGAC	1 cut(s)	168
BpmI	CTGGAG	2 cut(s)	219, 274
Bsa29I	ATCGAT	2 cut(s)	188, 658
BsaI	GGTCTC	1 cut(s)	237
BsaJI	CCNNGG	1 cut(s)	76
BsaWI	WCCGGW	1 cut(s)	433
Bse1I	ACTGG	1 cut(s)	478
Bse21I	CCTNAGG	1 cut(s)	554
Bse3DI	GCAATG	1 cut(s)	505
BseCI	ATCGAT	2 cut(s)	188, 658
BseDI	CCNNGG	1 cut(s)	76
BseMI	GCAATG	1 cut(s)	505
BseMII	CTCAG	3 cut(s)	231, 261, 605
BseNI	ACTGG	1 cut(s)	478
BseRI	GAGGAG	1 cut(s)	554
BseXI	GCAGC	3 cut(s)	365, 515, 516
BshVI	ATCGAT	2 cut(s)	188, 658
BsiHKAI	GWGCWC	3 cut(s)	95, 255, 464
BsiHKCI	CYCGRG	1 cut(s)	94
BsiSI	CCGG	1 cut(s)	434
BsiWI	CGTACG	1 cut(s)	132
BsmAI	GTCTC	2 cut(s)	237, 528
Bso31I	GGTCTC	1 cut(s)	237
BsoBI	CYCGRG	1 cut(s)	94
Bsp1286I	GDGCHC	3 cut(s)	95, 255, 464
Bsp143I	GATC	3 cut(s)	52, 185, 399
Bsp19I	CCATGG	1 cut(s)	76
BspACI	CCGC	2 cut(s)	177, 477
BspCNI	CTCAG	3 cut(s)	232, 260, 604
BspDI	ATCGAT	2 cut(s)	188, 658
BspMAI	CTGCAG	1 cut(s)	383
BspPI	GGATC	1 cut(s)	60
BspTNI	GGTCTC	1 cut(s)	237
BsrDI	GCAATG	1 cut(s)	505
BsrI	ACTGG	1 cut(s)	478
BssECI	CCNNGG	1 cut(s)	76
BssMI	GATC	3 cut(s)	52, 185, 399
BssSI	CACGAG	1 cut(s)	359
BssT1I	CCWWGG	1 cut(s)	76
Bst2BI	CACGAG	1 cut(s)	359
Bst4CI	ACNGT	1 cut(s)	9
Bst6I	CTCTTC	2 cut(s)	150, 450
BstC8I	GCNNGC	1 cut(s)	383
BstDEI	CTNAG	5 cut(s)	240, 247, 554, 591, 612
BstDSI	CCRYGG	1 cut(s)	76
BstH2I	RGCGCY	1 cut(s)	429
BstHHI	GCGC	1 cut(s)	428
BstKTI	GATC	3 cut(s)	55, 188, 402
BstMAI	GTCTC	2 cut(s)	237, 528
BstMBI	GATC	3 cut(s)	52, 185, 399
BstMWI	GCNNNNNNNGC	3 cut(s)	259, 423, 580
BstSFI	CTRYAG	1 cut(s)	379
BstV1I	GCAGC	3 cut(s)	365, 515, 516
BstV2I	GAAGAC	1 cut(s)	168
BstXI	CCANNNNNNTGG	1 cut(s)	345
Bsu15I	ATCGAT	2 cut(s)	188, 658
Bsu36I	CCTNAGG	1 cut(s)	554
BsuTUI	ATCGAT	2 cut(s)	188, 658
BtgI	CCRYGG	1 cut(s)	76
Cac8I	GCNNGC	1 cut(s)	383
CaiI	CAGNNNCTG	1 cut(s)	526
CfoI	GCGC	1 cut(s)	428
ClaI	ATCGAT	2 cut(s)	188, 658
Csp6I	GTAC	2 cut(s)	133, 439
CspCI	CAANNNNNGTGG	2 cut(s)	154, 189
CviAII	CATG	3 cut(s)	77, 198, 493
CviQI	GTAC	2 cut(s)	133, 439
DdeI	CTNAG	5 cut(s)	240, 247, 554, 591, 612
DpnI	GATC	3 cut(s)	54, 187, 401
DpnII	GATC	3 cut(s)	52, 185, 399
Eam1104I	CTCTTC	2 cut(s)	150, 450
EarI	CTCTTC	2 cut(s)	150, 450
Ecl136II	GAGCTC	2 cut(s)	93, 253
Eco130I	CCWWGG	1 cut(s)	76
Eco24I	GRGCYC	2 cut(s)	95, 255
Eco31I	GGTCTC	1 cut(s)	237
Eco32I	GATATC	1 cut(s)	61
Eco47III	AGCGCT	1 cut(s)	427
Eco53kI	GAGCTC	2 cut(s)	93, 253
Eco57I	CTGAAG	1 cut(s)	560
Eco81I	CCTNAGG	1 cut(s)	554
Eco88I	CYCGRG	1 cut(s)	94
EcoICRI	GAGCTC	2 cut(s)	93, 253
EcoRV	GATATC	1 cut(s)	61
EcoT14I	CCWWGG	1 cut(s)	76
EcoT38I	GRGCYC	2 cut(s)	95, 255
ErhI	CCWWGG	1 cut(s)	76
FaeI	CATG	3 cut(s)	80, 201, 496
FatI	CATG	3 cut(s)	76, 197, 492
FauI	CCCGC	1 cut(s)	470
FauNDI	CATATG	1 cut(s)	387
Fnu4HI	GCNGC	3 cut(s)	379, 504, 530
FriOI	GRGCYC	2 cut(s)	95, 255
Fsp4HI	GCNGC	3 cut(s)	379, 504, 530
FspBI	CTAG	4 cut(s)	143, 392, 465, 605
GlaI	GCGC	1 cut(s)	427
GluI	GCNGC	3 cut(s)	379, 504, 530
GsuI	CTGGAG	2 cut(s)	219, 274
HaeII	RGCGCY	1 cut(s)	429
HapII	CCGG	1 cut(s)	434
HhaI	GCGC	1 cut(s)	428
Hin1II	CATG	3 cut(s)	80, 201, 496
Hin6I	GCGC	1 cut(s)	426
HinP1I	GCGC	1 cut(s)	426
HinfI	GANTC	2 cut(s)	321, 517
HpaII	CCGG	1 cut(s)	434
HphI	GGTGA	2 cut(s)	82, 327
Hpy166II	GTNNAC	2 cut(s)	73, 439
Hpy188I	TCNGA	4 cut(s)	67, 250, 454, 579
Hpy188III	TCNNGA	3 cut(s)	56, 325, 370
Hpy8I	GTNNAC	2 cut(s)	73, 439
HpyAV	CCTTC	2 cut(s)	203, 367
HpyCH4III	ACNGT	1 cut(s)	9
HpyCH4IV	ACGT	1 cut(s)	131
HpyCH4V	TGCA	4 cut(s)	381, 503, 583, 643
HpyF10VI	GCNNNNNNNGC	3 cut(s)	259, 423, 580
HpyF3I	CTNAG	5 cut(s)	240, 247, 554, 591, 612
HpySE526I	ACGT	1 cut(s)	131
Hsp92II	CATG	3 cut(s)	80, 201, 496
HspAI	GCGC	1 cut(s)	426
Kzo9I	GATC	3 cut(s)	52, 185, 399
LmnI	GCTCC	1 cut(s)	571
LpnPI	CCDG	9 cut(s)	41, 101, 123, 249, 304, 367, 383, 447, 459
Lsp1109I	GCAGC	3 cut(s)	365, 515, 516
LweI	GCATC	1 cut(s)	570
MaeI	CTAG	4 cut(s)	143, 392, 465, 605
MaeII	ACGT	1 cut(s)	131
MalI	GATC	3 cut(s)	54, 187, 401
MboI	GATC	3 cut(s)	52, 185, 399
MboII	GAAGA	5 cut(s)	161, 164, 167, 173, 467
MhlI	GDGCHC	3 cut(s)	95, 255, 464
MmeI	TCCRAC	1 cut(s)	600
MnlI	CCTC	5 cut(s)	61, 90, 139, 151, 532
MseI	TTAA	2 cut(s)	309, 483
MspA1I	CMGCKG	1 cut(s)	239
MspI	CCGG	1 cut(s)	434
MwoI	GCNNNNNNNGC	3 cut(s)	259, 423, 580
NcoI	CCATGG	1 cut(s)	76
NdeI	CATATG	1 cut(s)	387
NdeII	GATC	3 cut(s)	52, 185, 399
NlaIII	CATG	3 cut(s)	80, 201, 496
PaeR7I	CTCGAG	1 cut(s)	94
PfeI	GAWTC	2 cut(s)	321, 517
Pfl23II	CGTACG	1 cut(s)	132
PkrI	GCNGC	3 cut(s)	380, 505, 531
Psp124BI	GAGCTC	2 cut(s)	95, 255
PspLI	CGTACG	1 cut(s)	132
PspXI	VCTCGAGB	1 cut(s)	94
PstI	CTGCAG	1 cut(s)	383
PstNI	CAGNNNCTG	1 cut(s)	526
PvuII	CAGCTG	1 cut(s)	239
RsaI	GTAC	2 cut(s)	134, 440
RsaNI	GTAC	2 cut(s)	133, 439
SacI	GAGCTC	2 cut(s)	95, 255
SaqAI	TTAA	2 cut(s)	309, 483
SatI	GCNGC	3 cut(s)	379, 504, 530
Sau3AI	GATC	3 cut(s)	52, 185, 399
SduI	GDGCHC	3 cut(s)	95, 255, 464
SfaNI	GCATC	1 cut(s)	570
SfcI	CTRYAG	1 cut(s)	379
Sfr274I	CTCGAG	1 cut(s)	94
SlaI	CTCGAG	1 cut(s)	94
SmlI	CTYRAG	1 cut(s)	94
SmoI	CTYRAG	1 cut(s)	94
SpeI	ACTAGT	1 cut(s)	464
SsiI	CCGC	2 cut(s)	177, 477
SspMI	CTAG	4 cut(s)	143, 392, 465, 605
SstI	GAGCTC	2 cut(s)	95, 255
StyI	CCWWGG	1 cut(s)	76
TaaI	ACNGT	1 cut(s)	9
TaiI	ACGT	1 cut(s)	134
TaqI	TCGA	4 cut(s)	95, 188, 406, 658
TfiI	GAWTC	2 cut(s)	321, 517
Tru1I	TTAA	2 cut(s)	309, 483
Tru9I	TTAA	2 cut(s)	309, 483
TseI	GCWGC	3 cut(s)	378, 503, 529
TspGWI	ACGGA	1 cut(s)	219
XhoI	CTCGAG	1 cut(s)	94
XspI	CTAG	4 cut(s)	143, 392, 465, 605

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.