Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0013636

Physical Location & Seq

Genomic Coordinates Forward (+)

26527751 .. 26529740

Gene Structure 1990 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g24740.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGCTACAAAATCTTCCCGGACAAGAAGCACCGCTCCGTTTCTGTCGAAGACGTTCGATTTGCTAGAAGAAAATGACGGAGGAGATGGTGGTGGGAAGAGAAATATTGTGTCATGGAATGTAGAGGGCACTGGATTTATAGTATGGTCTCCTGATGATTTCTCAGAGCTCTTGTTGCCTAAATATTTCAAGCACAGCAATTTCTCCAGCTTCATTCGCCAGCTTAATACCTATGGATTCAAAAAAACATCACGAAAAGAGTGGGAATTTAAGCATGAGAAATTCCAGAAGGGCTGCAGGGAGATGCTAGTGGAGATCACCAGGAAGAAATGCGAACCAAGTGCTTTTCCAGTGTATCTAAAGGCTTCAGAAGAGAGTGGGAGCACAAGCACTGCAGTGGCAGCAGCAGAAGAAAACAACTGCCTCCTATTAATGGAGGAGAATAAGAACCTGAGAAAGCAGAAGTTGGAGCTGCAGGTGCAAATAGCTCAGTTCAAAACACTTGAAAGTAAGCTGTTGGACTGCGTTGCTCAGTGCATGGACGACCATCAGAACAATGTACGATGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

190

Amino Acids

21.61

Weight (kDa)

8.17

Isoelectric Point (pI)

43.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013636)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g09340
malus_domestica	MD00G1095900.v1.1 MD05G1313700.v1.1
prunus_persica	Prupe.4G046000_v2.0.a1 Prupe.4G046000_v2.0.a1
pyrus_communis	pycom05g29150 pycom10g24740
rosa_chinensis	RchiOBHm_Chr5g0008251
rosa_laevigata	RLG00000031554
rosa_multiflora	Rmu_sc0001387.1_g000003 Rmu_sc0028309.1_g000001
rosa_roxburghii	Rroxscaffold_1G00068230
rosa_rugosa	Rorug04G0434700
rosa_samantha	Rh5AG063100 Rh5BG059300 Rh5CG070000 Rh5DG058900
rosa_wichuraiana	Rw5G005790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	466
Acc36I	ACCTGC	1 cut(s)	466
AccBSI	CCGCTC	1 cut(s)	35
AciI	CCGC	1 cut(s)	33
AcsI	RAATTY	2 cut(s)	266, 281
AcuI	CTGAAG	1 cut(s)	351
AfaI	GTAC	1 cut(s)	561
AfiI	CCNNNNNNNGG	1 cut(s)	433
AgsI	TTSAA	4 cut(s)	190, 241, 496, 506
AjnI	CCWGG	1 cut(s)	320
AleI	CACNNNNGTG	1 cut(s)	395
AluBI	AGCT	6 cut(s)	169, 210, 223, 472, 488, 514
AluI	AGCT	6 cut(s)	169, 210, 223, 472, 488, 514
Alw21I	GWGCWC	2 cut(s)	171, 386
Alw26I	GTCTC	1 cut(s)	153
ApeKI	GCWGC	4 cut(s)	294, 401, 404, 472
ApoI	RAATTY	2 cut(s)	266, 281
ArsI	GACNNNNNNTTYG	2 cut(s)	43, 75
AseI	ATTAAT	1 cut(s)	431
Asp700I	GAANNNNTTC	1 cut(s)	53
AsuC2I	CCSGG	1 cut(s)	19
AsuHPI	GGTGA	1 cut(s)	310
BaeGI	GKGCMC	1 cut(s)	131
BanII	GRGCYC	1 cut(s)	171
BbsI	GAAGAC	1 cut(s)	56
Bbv12I	GWGCWC	2 cut(s)	171, 386
BbvI	GCAGC	4 cut(s)	281, 413, 416, 459
BccI	CCATC	2 cut(s)	80, 555
BcgI	CGANNNNNNTGC	2 cut(s)	323, 357
BciT130I	CCWGG	1 cut(s)	322
BcnI	CCSGG	1 cut(s)	19
BcoDI	GTCTC	1 cut(s)	153
BfaI	CTAG	2 cut(s)	65, 308
BfmI	CTRYAG	3 cut(s)	295, 393, 473
BfuAI	ACCTGC	1 cut(s)	466
BisI	GCNGC	4 cut(s)	295, 402, 405, 473
BlsI	GCNGC	4 cut(s)	296, 403, 406, 474
Bme1390I	CCNGG	2 cut(s)	19, 322
BmrFI	CCNGG	2 cut(s)	19, 322
BmsI	GCATC	2 cut(s)	294, 554
BpiI	GAAGAC	1 cut(s)	56
BpmI	CTGGAG	1 cut(s)	190
BpuMI	CCSGG	1 cut(s)	19
BsaI	GGTCTC	1 cut(s)	153
Bsc4I	CCNNNNNNNGG	1 cut(s)	433
Bse1I	ACTGG	2 cut(s)	136, 350
BseBI	CCWGG	1 cut(s)	322
BseLI	CCNNNNNNNGG	1 cut(s)	433
BseMII	CTCAG	4 cut(s)	177, 443, 503, 545
BseNI	ACTGG	2 cut(s)	136, 350
BseRI	GAGGAG	2 cut(s)	96, 452
BseSI	GKGCMC	1 cut(s)	131
BseXI	GCAGC	4 cut(s)	281, 413, 416, 459
BsiHKAI	GWGCWC	2 cut(s)	171, 386
BsiSI	CCGG	1 cut(s)	19
BslI	CCNNNNNNNGG	1 cut(s)	433
BsmAI	GTCTC	1 cut(s)	153
Bso31I	GGTCTC	1 cut(s)	153
Bsp1286I	GDGCHC	3 cut(s)	131, 171, 386
Bsp143I	GATC	1 cut(s)	315
BspACI	CCGC	1 cut(s)	33
BspCNI	CTCAG	4 cut(s)	176, 444, 502, 544
BspMAI	CTGCAG	3 cut(s)	299, 397, 477
BspMI	ACCTGC	1 cut(s)	466
BspTNI	GGTCTC	1 cut(s)	153
BsrBI	CCGCTC	1 cut(s)	35
BsrI	ACTGG	2 cut(s)	136, 350
BssMI	GATC	1 cut(s)	315
Bst2UI	CCWGG	1 cut(s)	322
Bst6I	CTCTTC	2 cut(s)	92, 366
BstC8I	GCNNGC	1 cut(s)	221
BstDEI	CTNAG	4 cut(s)	163, 452, 489, 531
BstKTI	GATC	1 cut(s)	318
BstMAI	GTCTC	1 cut(s)	153
BstMBI	GATC	1 cut(s)	315
BstMWI	GCNNNNNNNGC	4 cut(s)	175, 216, 401, 478
BstNI	CCWGG	1 cut(s)	322
BstSCI	CCNGG	2 cut(s)	17, 320
BstSFI	CTRYAG	3 cut(s)	295, 393, 473
BstSLI	GKGCMC	1 cut(s)	131
BstV1I	GCAGC	4 cut(s)	281, 413, 416, 459
BstV2I	GAAGAC	1 cut(s)	56
BtsI	GCAGTG	2 cut(s)	390, 402
BtsIMutI	CAGTG	5 cut(s)	129, 357, 390, 402, 539
BveI	ACCTGC	1 cut(s)	466
Cac8I	GCNNGC	1 cut(s)	221
Csp6I	GTAC	1 cut(s)	560
CviAII	CATG	3 cut(s)	114, 275, 538
CviJI	RGCY	9 cut(s)	5, 169, 210, 223, 294, 365, 472, 488, 514
CviKI_1	RGCY	9 cut(s)	5, 169, 210, 223, 294, 365, 472, 488, 514
CviQI	GTAC	1 cut(s)	560
DdeI	CTNAG	4 cut(s)	163, 452, 489, 531
DpnI	GATC	1 cut(s)	317
DpnII	GATC	1 cut(s)	315
Eam1104I	CTCTTC	2 cut(s)	92, 366
EarI	CTCTTC	2 cut(s)	92, 366
Ecl136II	GAGCTC	1 cut(s)	169
Eco24I	GRGCYC	1 cut(s)	171
Eco31I	GGTCTC	1 cut(s)	153
Eco53kI	GAGCTC	1 cut(s)	169
Eco57I	CTGAAG	1 cut(s)	351
EcoICRI	GAGCTC	1 cut(s)	169
EcoRII	CCWGG	1 cut(s)	320
EcoT38I	GRGCYC	1 cut(s)	171
FaeI	CATG	3 cut(s)	117, 278, 541
FaiI	YATR	6 cut(s)	115, 140, 145, 234, 276, 539
FatI	CATG	3 cut(s)	113, 274, 537
Fnu4HI	GCNGC	4 cut(s)	295, 402, 405, 473
FriOI	GRGCYC	1 cut(s)	171
Fsp4HI	GCNGC	4 cut(s)	295, 402, 405, 473
FspBI	CTAG	2 cut(s)	65, 308
GluI	GCNGC	4 cut(s)	295, 402, 405, 473
GsuI	CTGGAG	1 cut(s)	190
HapII	CCGG	1 cut(s)	19
Hin1II	CATG	3 cut(s)	117, 278, 541
HinfI	GANTC	1 cut(s)	237
HpaII	CCGG	1 cut(s)	19
HphI	GGTGA	1 cut(s)	310
Hpy188I	TCNGA	3 cut(s)	166, 370, 552
Hpy188III	TCNNGA	3 cut(s)	152, 252, 286
HpyAV	CCTTC	1 cut(s)	283
HpyCH4IV	ACGT	1 cut(s)	53
HpyCH4V	TGCA	5 cut(s)	297, 395, 475, 481, 537
HpyF10VI	GCNNNNNNNGC	4 cut(s)	175, 216, 401, 478
HpyF3I	CTNAG	4 cut(s)	163, 452, 489, 531
HpySE526I	ACGT	1 cut(s)	53
Hsp92II	CATG	3 cut(s)	117, 278, 541
Kzo9I	GATC	1 cut(s)	315
LmnI	GCTCC	3 cut(s)	40, 381, 469
Lsp1109I	GCAGC	4 cut(s)	281, 413, 416, 459
LweI	GCATC	2 cut(s)	294, 554
MaeI	CTAG	2 cut(s)	65, 308
MaeII	ACGT	1 cut(s)	53
MalI	GATC	1 cut(s)	317
MbiI	CCGCTC	1 cut(s)	35
MboI	GATC	1 cut(s)	315
MboII	GAAGA	7 cut(s)	6, 61, 80, 109, 337, 383, 422
MhlI	GDGCHC	3 cut(s)	131, 171, 386
MluCI	AATT	3 cut(s)	199, 266, 281
MmeI	TCCRAC	2 cut(s)	447, 498
MnlI	CCTC	4 cut(s)	74, 118, 430, 434
MroXI	GAANNNNTTC	1 cut(s)	53
MseI	TTAA	3 cut(s)	225, 270, 431
MslI	CAYNNNNRTG	1 cut(s)	395
MspI	CCGG	1 cut(s)	19
MspR9I	CCNGG	2 cut(s)	19, 322
MvaI	CCWGG	1 cut(s)	322
MwoI	GCNNNNNNNGC	4 cut(s)	175, 216, 401, 478
NciI	CCSGG	1 cut(s)	19
NdeII	GATC	1 cut(s)	315
NlaIII	CATG	3 cut(s)	117, 278, 541
OliI	CACNNNNGTG	1 cut(s)	395
PaqCI	CACCTGC	1 cut(s)	466
PdmI	GAANNNNTTC	1 cut(s)	53
PfeI	GAWTC	1 cut(s)	237
PfoI	TCCNGGA	1 cut(s)	17
PkrI	GCNGC	4 cut(s)	296, 403, 406, 474
PshBI	ATTAAT	1 cut(s)	431
Psp124BI	GAGCTC	1 cut(s)	171
Psp6I	CCWGG	1 cut(s)	320
PspGI	CCWGG	1 cut(s)	320
PstI	CTGCAG	3 cut(s)	299, 397, 477
RsaI	GTAC	1 cut(s)	561
RsaNI	GTAC	1 cut(s)	560
RseI	CAYNNNNRTG	1 cut(s)	395
SacI	GAGCTC	1 cut(s)	171
SaqAI	TTAA	3 cut(s)	225, 270, 431
SatI	GCNGC	4 cut(s)	295, 402, 405, 473
Sau3AI	GATC	1 cut(s)	315
ScrFI	CCNGG	2 cut(s)	19, 322
SduI	GDGCHC	3 cut(s)	131, 171, 386
SfaNI	GCATC	2 cut(s)	294, 554
SfcI	CTRYAG	3 cut(s)	295, 393, 473
SmiMI	CAYNNNNRTG	1 cut(s)	395
Sse9I	AATT	3 cut(s)	199, 266, 281
SsiI	CCGC	1 cut(s)	33
SspI	AATATT	2 cut(s)	106, 185
SspMI	CTAG	2 cut(s)	65, 308
SstI	GAGCTC	1 cut(s)	171
StyD4I	CCNGG	2 cut(s)	17, 320
TaiI	ACGT	1 cut(s)	56
TaqI	TCGA	2 cut(s)	47, 57
TasI	AATT	3 cut(s)	199, 266, 281
TfiI	GAWTC	1 cut(s)	237
Tru1I	TTAA	3 cut(s)	225, 270, 431
Tru9I	TTAA	3 cut(s)	225, 270, 431
TscAI	CASTG	5 cut(s)	136, 357, 397, 402, 539
TseI	GCWGC	4 cut(s)	294, 401, 404, 472
TspDTI	ATGAA	1 cut(s)	202
TspGWI	ACGGA	2 cut(s)	27, 93
TspRI	CASTG	5 cut(s)	136, 357, 397, 402, 539
VspI	ATTAAT	1 cut(s)	431
XapI	RAATTY	2 cut(s)	266, 281
XmnI	GAANNNNTTC	1 cut(s)	53
XspI	CTAG	2 cut(s)	65, 308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.