Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0013636

Physical Location & Seq

Genomic Coordinates Reverse (-)

4879107 .. 4881366

Gene Structure 2260 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG059300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGAACTCTTTGGAAGAACCATAAATAGAGAAAACAGCTCTATGTGTATGGATCAACATATCTCGGAGGTGAACCATGGCACAAGTCAGAGTTCGAGGACGAGAAGCCCTGCCCCGTTTTTGTCGAAAACGTACGATTTGCTAGAGGAAGAAGAAGAGGAAGACGAAGATGGCCGCGGGAAGAGATCAATTGTGTCATGGAATGGAGAGGGAAATGGGTTTATAGTATGGTCTCCTGCTGAGTTCTCAGAGCTCTTGTTGCCTAAATACTTCAAGCACAATAACTTCTCCAGCTTTATTCGCCAGCTTAATACCTATGGATTCAAGAAAACATCACCAAAACGATGGGAATTCAAACACGAGAAGTTCCAGAAGGGATGCCGGCATATGCTACTGGAGATCAATCGGAAGAAATGCGAACCGAGCACTTTTCCGGTGTATCTAAAGGCTTCGGAAGAGAGGAGCACTAGTGCTGCTGGCCTTAATCGAAGCATGAGCAATGCAGCAGAACAAGAGAATCAGTCTTTGCTGCTAATGGAGGAGAACAAGAACCTAAGGAAGCAGAAAATGGAGCTTCAGACGCAACTTTCTCAGTTCAAAGCACTAGAAACTAAGCTGTTGGATTGTGTGGGTCAGTATATGCAAGACCATCACAATCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

220

Amino Acids

25.68

Weight (kDa)

7.7

Isoelectric Point (pI)

71.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSF_DNA-bind	PF00447	40 - 137	2.1e-26	HSF-type DNA-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013636)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g09340
malus_domestica	MD00G1095900.v1.1 MD05G1313700.v1.1
prunus_persica	Prupe.4G046000_v2.0.a1 Prupe.4G046000_v2.0.a1
pyrus_communis	pycom05g29150 pycom10g24740
rosa_chinensis	RchiOBHm_Chr5g0008251
rosa_laevigata	RLG00000031554
rosa_multiflora	Rmu_sc0001387.1_g000003 Rmu_sc0028309.1_g000001
rosa_roxburghii	Rroxscaffold_1G00068230
rosa_rugosa	Rorug04G0434700
rosa_samantha	Rh5AG063100 Rh5BG059300 Rh5CG070000 Rh5DG058900
rosa_wichuraiana	Rw5G005790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	177
AciI	CCGC	2 cut(s)	175, 177
AclWI	GGATC	1 cut(s)	60
AcoI	YGGCCR	1 cut(s)	172
AcsI	RAATTY	1 cut(s)	350
AcuI	CTGAAG	1 cut(s)	560
AfaI	GTAC	1 cut(s)	134
AgsI	TTSAA	4 cut(s)	274, 325, 355, 598
AhlI	ACTAGT	1 cut(s)	467
AluBI	AGCT	6 cut(s)	39, 253, 294, 307, 574, 616
AluI	AGCT	6 cut(s)	39, 253, 294, 307, 574, 616
Alw21I	GWGCWC	3 cut(s)	255, 428, 467
Alw26I	GTCTC	1 cut(s)	237
AlwI	GGATC	1 cut(s)	60
AoxI	GGCC	2 cut(s)	172, 478
ApeKI	GCWGC	3 cut(s)	473, 503, 529
ApoI	RAATTY	1 cut(s)	350
AsuHPI	GGTGA	2 cut(s)	82, 327
AxyI	CCTNAGG	1 cut(s)	554
BanII	GRGCYC	1 cut(s)	255
BauI	CACGAG	1 cut(s)	359
BbsI	GAAGAC	1 cut(s)	168
Bbv12I	GWGCWC	3 cut(s)	255, 428, 467
BbvI	GCAGC	3 cut(s)	460, 515, 516
BccI	CCATC	3 cut(s)	164, 339, 657
BcoDI	GTCTC	1 cut(s)	237
BcuI	ACTAGT	1 cut(s)	467
BfaI	CTAG	3 cut(s)	143, 468, 605
BisI	GCNGC	4 cut(s)	175, 474, 504, 530
BlsI	GCNGC	4 cut(s)	176, 475, 505, 531
BmsI	GCATC	1 cut(s)	368
BpiI	GAAGAC	1 cut(s)	168
BpmI	CTGGAG	2 cut(s)	274, 416
Bsa29I	ATCGAT	1 cut(s)	658
BsaI	GGTCTC	1 cut(s)	237
BsaJI	CCNNGG	2 cut(s)	76, 175
BsaWI	WCCGGW	1 cut(s)	433
BsaXI	ACNNNNNCTCC	2 cut(s)	454, 484
Bse118I	RCCGGY	1 cut(s)	381
Bse1I	ACTGG	1 cut(s)	399
Bse21I	CCTNAGG	1 cut(s)	554
Bse3DI	GCAATG	1 cut(s)	505
BseCI	ATCGAT	1 cut(s)	658
BseDI	CCNNGG	2 cut(s)	76, 175
BseGI	GGATG	1 cut(s)	383
BseMI	GCAATG	1 cut(s)	505
BseMII	CTCAG	3 cut(s)	231, 261, 605
BseNI	ACTGG	1 cut(s)	399
BseRI	GAGGAG	2 cut(s)	475, 554
BseXI	GCAGC	3 cut(s)	460, 515, 516
Bsh1236I	CGCG	1 cut(s)	177
BshFI	GGCC	2 cut(s)	174, 480
BshVI	ATCGAT	1 cut(s)	658
BsiHKAI	GWGCWC	3 cut(s)	255, 428, 467
BsiSI	CCGG	2 cut(s)	382, 434
BsiWI	CGTACG	1 cut(s)	132
BsmAI	GTCTC	1 cut(s)	237
BsnI	GGCC	2 cut(s)	174, 480
Bso31I	GGTCTC	1 cut(s)	237
Bsp1286I	GDGCHC	3 cut(s)	255, 428, 467
Bsp143I	GATC	3 cut(s)	52, 185, 399
Bsp19I	CCATGG	1 cut(s)	76
BspACI	CCGC	2 cut(s)	175, 177
BspANI	GGCC	2 cut(s)	174, 480
BspCNI	CTCAG	3 cut(s)	232, 260, 604
BspDI	ATCGAT	1 cut(s)	658
BspFNI	CGCG	1 cut(s)	177
BspPI	GGATC	1 cut(s)	60
BspTNI	GGTCTC	1 cut(s)	237
BsrDI	GCAATG	1 cut(s)	505
BsrFI	RCCGGY	1 cut(s)	381
BsrI	ACTGG	1 cut(s)	399
BssAI	RCCGGY	1 cut(s)	381
BssECI	CCNNGG	2 cut(s)	76, 175
BssMI	GATC	3 cut(s)	52, 185, 399
BssSI	CACGAG	1 cut(s)	359
BssT1I	CCWWGG	1 cut(s)	76
Bst2BI	CACGAG	1 cut(s)	359
Bst6I	CTCTTC	3 cut(s)	150, 176, 450
BstC8I	GCNNGC	3 cut(s)	305, 383, 478
BstDEI	CTNAG	5 cut(s)	240, 247, 554, 591, 612
BstDSI	CCRYGG	2 cut(s)	76, 175
BstF5I	GGATG	1 cut(s)	383
BstFNI	CGCG	1 cut(s)	177
BstKTI	GATC	3 cut(s)	55, 188, 402
BstMAI	GTCTC	1 cut(s)	237
BstMBI	GATC	3 cut(s)	52, 185, 399
BstMWI	GCNNNNNNNGC	4 cut(s)	259, 300, 423, 580
BstUI	CGCG	1 cut(s)	177
BstV1I	GCAGC	3 cut(s)	460, 515, 516
BstV2I	GAAGAC	1 cut(s)	168
BstXI	CCANNNNNNTGG	1 cut(s)	345
Bsu15I	ATCGAT	1 cut(s)	658
Bsu36I	CCTNAGG	1 cut(s)	554
BsuRI	GGCC	2 cut(s)	174, 480
BsuTUI	ATCGAT	1 cut(s)	658
BtgI	CCRYGG	2 cut(s)	76, 175
BtsCI	GGATG	1 cut(s)	383
Cac8I	GCNNGC	3 cut(s)	305, 383, 478
Cfr10I	RCCGGY	1 cut(s)	381
Cfr42I	CCGCGG	1 cut(s)	178
ClaI	ATCGAT	1 cut(s)	658
CseI	GACGC	1 cut(s)	589
Csp6I	GTAC	1 cut(s)	133
CviAII	CATG	3 cut(s)	77, 198, 493
CviQI	GTAC	1 cut(s)	133
DdeI	CTNAG	5 cut(s)	240, 247, 554, 591, 612
DpnI	GATC	3 cut(s)	54, 187, 401
DpnII	GATC	3 cut(s)	52, 185, 399
EaeI	YGGCCR	1 cut(s)	172
Eam1104I	CTCTTC	3 cut(s)	150, 176, 450
EarI	CTCTTC	3 cut(s)	150, 176, 450
Ecl136II	GAGCTC	1 cut(s)	253
Eco130I	CCWWGG	1 cut(s)	76
Eco24I	GRGCYC	1 cut(s)	255
Eco31I	GGTCTC	1 cut(s)	237
Eco53kI	GAGCTC	1 cut(s)	253
Eco57I	CTGAAG	1 cut(s)	560
Eco81I	CCTNAGG	1 cut(s)	554
EcoICRI	GAGCTC	1 cut(s)	253
EcoRI	GAATTC	1 cut(s)	350
EcoT14I	CCWWGG	1 cut(s)	76
EcoT38I	GRGCYC	1 cut(s)	255
ErhI	CCWWGG	1 cut(s)	76
FaeI	CATG	3 cut(s)	80, 201, 496
FatI	CATG	3 cut(s)	76, 197, 492
FauI	CCCGC	1 cut(s)	170
FauNDI	CATATG	1 cut(s)	387
Fnu4HI	GCNGC	4 cut(s)	175, 474, 504, 530
FokI	GGATG	1 cut(s)	390
FriOI	GRGCYC	1 cut(s)	255
Fsp4HI	GCNGC	4 cut(s)	175, 474, 504, 530
FspBI	CTAG	3 cut(s)	143, 468, 605
GluI	GCNGC	4 cut(s)	175, 474, 504, 530
GsuI	CTGGAG	2 cut(s)	274, 416
HaeIII	GGCC	2 cut(s)	174, 480
HapII	CCGG	2 cut(s)	382, 434
HgaI	GACGC	1 cut(s)	589
Hin1II	CATG	3 cut(s)	80, 201, 496
HinfI	GANTC	2 cut(s)	321, 517
HpaII	CCGG	2 cut(s)	382, 434
HphI	GGTGA	2 cut(s)	82, 327
Hpy166II	GTNNAC	1 cut(s)	73
Hpy188I	TCNGA	6 cut(s)	67, 90, 250, 408, 454, 579
Hpy188III	TCNNGA	2 cut(s)	325, 370
Hpy8I	GTNNAC	1 cut(s)	73
HpyAV	CCTTC	1 cut(s)	367
HpyCH4IV	ACGT	1 cut(s)	131
HpyCH4V	TGCA	2 cut(s)	503, 643
HpyF10VI	GCNNNNNNNGC	4 cut(s)	259, 300, 423, 580
HpyF3I	CTNAG	5 cut(s)	240, 247, 554, 591, 612
HpySE526I	ACGT	1 cut(s)	131
Hsp92II	CATG	3 cut(s)	80, 201, 496
KroI	GCCGGC	1 cut(s)	381
KroNI	GCCGGC	1 cut(s)	383
KspI	CCGCGG	1 cut(s)	178
Kzo9I	GATC	3 cut(s)	52, 185, 399
LmnI	GCTCC	2 cut(s)	462, 571
LpnPI	CCDG	9 cut(s)	123, 249, 304, 317, 380, 383, 395, 447, 462
Lsp1109I	GCAGC	3 cut(s)	460, 515, 516
LweI	GCATC	1 cut(s)	368
MaeI	CTAG	3 cut(s)	143, 468, 605
MaeII	ACGT	1 cut(s)	131
MalI	GATC	3 cut(s)	54, 187, 401
MboI	GATC	3 cut(s)	52, 185, 399
MboII	GAAGA	9 cut(s)	27, 161, 164, 167, 173, 179, 193, 421, 467
MfeI	CAATTG	1 cut(s)	189
MhlI	GDGCHC	3 cut(s)	255, 428, 467
MluCI	AATT	2 cut(s)	189, 350
MmeI	TCCRAC	1 cut(s)	600
MnlI	CCTC	7 cut(s)	61, 90, 139, 151, 202, 453, 532
MroNI	GCCGGC	1 cut(s)	381
MseI	TTAA	2 cut(s)	309, 483
MspA1I	CMGCKG	1 cut(s)	177
MspI	CCGG	2 cut(s)	382, 434
MunI	CAATTG	1 cut(s)	189
MvnI	CGCG	1 cut(s)	177
MwoI	GCNNNNNNNGC	4 cut(s)	259, 300, 423, 580
NaeI	GCCGGC	1 cut(s)	383
NcoI	CCATGG	1 cut(s)	76
NdeI	CATATG	1 cut(s)	387
NdeII	GATC	3 cut(s)	52, 185, 399
NgoMIV	GCCGGC	1 cut(s)	381
NlaIII	CATG	3 cut(s)	80, 201, 496
PdiI	GCCGGC	1 cut(s)	383
PfeI	GAWTC	2 cut(s)	321, 517
Pfl23II	CGTACG	1 cut(s)	132
PkrI	GCNGC	4 cut(s)	176, 475, 505, 531
Psp124BI	GAGCTC	1 cut(s)	255
PspLI	CGTACG	1 cut(s)	132
RsaI	GTAC	1 cut(s)	134
RsaNI	GTAC	1 cut(s)	133
SacI	GAGCTC	1 cut(s)	255
SacII	CCGCGG	1 cut(s)	178
SaqAI	TTAA	2 cut(s)	309, 483
SatI	GCNGC	4 cut(s)	175, 474, 504, 530
Sau3AI	GATC	3 cut(s)	52, 185, 399
SduI	GDGCHC	3 cut(s)	255, 428, 467
SfaNI	GCATC	1 cut(s)	368
Sfr303I	CCGCGG	1 cut(s)	178
SgrBI	CCGCGG	1 cut(s)	178
SpeI	ACTAGT	1 cut(s)	467
Sse9I	AATT	2 cut(s)	189, 350
SsiI	CCGC	2 cut(s)	175, 177
SspMI	CTAG	3 cut(s)	143, 468, 605
SstI	GAGCTC	1 cut(s)	255
StyI	CCWWGG	1 cut(s)	76
TaiI	ACGT	1 cut(s)	134
TaqI	TCGA	4 cut(s)	95, 125, 487, 658
TasI	AATT	2 cut(s)	189, 350
TauI	GCSGC	1 cut(s)	177
TfiI	GAWTC	2 cut(s)	321, 517
Tru1I	TTAA	2 cut(s)	309, 483
Tru9I	TTAA	2 cut(s)	309, 483
TseI	GCWGC	3 cut(s)	473, 503, 529
XapI	RAATTY	1 cut(s)	350
XspI	CTAG	3 cut(s)	143, 468, 605

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.