Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0013636

Physical Location & Seq

Genomic Coordinates Forward (+)

29679385 .. 29681826

Gene Structure 2442 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g29150.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGCTGAAACTTCTTCCCGAACAAGAAGCGCCGCCCCGTTTCTGTCGAAGACGTTCGATCTGCTAGAAGAACAAGATGTCGGAGGAGATGGTGGTGGGAAGAGGAATATTGTGTCATGGAATGTAGAGGGCACTGGATTTATAGTATGGTCTCCTGCTGATTTCTCAGAGCTCCTGCTGCCTAAATATTTCAAGCACAACAACTTCTCCAGCTTCATTCGCCAACTTAATACCTATGGATTCAAGAAAACATCACCAAAACTGTGGGAATTTAAGCATGAAAAGTTCCAAAAGGGCTGCAGGCACATGCTAGTTGAGATCACCAGGAAGAAATGCGAACCAAGTGCTTTTCCAGCGTATCTGAAGGCTTCAGAAGAGAGTGGCAGCACAAGCACTGCACTGGCAGCAGCAGAAGAAAACAATTGCCTGCTATTAATGGAGGAGAATAAGAACCTGAGAAAACAGCAGTTGGAGCTGCAGGTGCAAATAGCTCAGTTCAGAACACTGGAAAATAAGCTGTTGGATTGCGTAGCTCAGTACATGGATGACCATCGGAACAAAGCTCGATGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

191

Amino Acids

21.72

Weight (kDa)

8.55

Isoelectric Point (pI)

56.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013636)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g09340
malus_domestica	MD00G1095900.v1.1 MD05G1313700.v1.1
prunus_persica	Prupe.4G046000_v2.0.a1 Prupe.4G046000_v2.0.a1
pyrus_communis	pycom05g29150 pycom10g24740
rosa_chinensis	RchiOBHm_Chr5g0008251
rosa_laevigata	RLG00000031554
rosa_multiflora	Rmu_sc0001387.1_g000003 Rmu_sc0028309.1_g000001
rosa_roxburghii	Rroxscaffold_1G00068230
rosa_rugosa	Rorug04G0434700
rosa_samantha	Rh5AG063100 Rh5BG059300 Rh5CG070000 Rh5DG058900
rosa_wichuraiana	Rw5G005790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	469
Acc36I	ACCTGC	1 cut(s)	469
AciI	CCGC	1 cut(s)	33
AcsI	RAATTY	1 cut(s)	269
AcuI	CTGAAG	2 cut(s)	354, 383
AfaI	GTAC	1 cut(s)	539
AgsI	TTSAA	2 cut(s)	193, 244
AjnI	CCWGG	1 cut(s)	323
AluBI	AGCT	7 cut(s)	172, 213, 475, 491, 517, 533, 563
AluI	AGCT	7 cut(s)	172, 213, 475, 491, 517, 533, 563
Alw21I	GWGCWC	1 cut(s)	174
Alw26I	GTCTC	1 cut(s)	156
ApeKI	GCWGC	6 cut(s)	178, 297, 384, 404, 407, 475
ApoI	RAATTY	1 cut(s)	269
AseI	ATTAAT	1 cut(s)	434
Asp700I	GAANNNNTTC	1 cut(s)	53
AspLEI	GCGC	1 cut(s)	32
AsuHPI	GGTGA	2 cut(s)	246, 313
BaeGI	GKGCMC	1 cut(s)	134
BanII	GRGCYC	1 cut(s)	174
BbsI	GAAGAC	1 cut(s)	56
Bbv12I	GWGCWC	1 cut(s)	174
BbvI	GCAGC	6 cut(s)	165, 284, 396, 416, 419, 462
BccI	CCATC	2 cut(s)	83, 558
BcgI	CGANNNNNNTGC	2 cut(s)	326, 360
BciT130I	CCWGG	1 cut(s)	325
BcoDI	GTCTC	1 cut(s)	156
BfaI	CTAG	2 cut(s)	65, 311
BfmI	CTRYAG	2 cut(s)	298, 476
BfoI	RGCGCY	1 cut(s)	33
BfuAI	ACCTGC	1 cut(s)	469
BisI	GCNGC	7 cut(s)	33, 179, 298, 385, 405, 408, 476
BlsI	GCNGC	7 cut(s)	34, 180, 299, 386, 406, 409, 477
Bme1390I	CCNGG	1 cut(s)	325
BmrFI	CCNGG	1 cut(s)	325
BmsI	GCATC	1 cut(s)	557
BpiI	GAAGAC	1 cut(s)	56
BpmI	CTGGAG	1 cut(s)	193
BsaBI	GATNNNNATC	1 cut(s)	549
BsaI	GGTCTC	1 cut(s)	156
BsaXI	ACNNNNNCTCC	2 cut(s)	191, 221
Bse1I	ACTGG	3 cut(s)	139, 405, 510
Bse8I	GATNNNNATC	1 cut(s)	549
BseBI	CCWGG	1 cut(s)	325
BseGI	GGATG	1 cut(s)	550
BseJI	GATNNNNATC	1 cut(s)	549
BseMII	CTCAG	4 cut(s)	180, 446, 506, 548
BseNI	ACTGG	3 cut(s)	139, 405, 510
BseRI	GAGGAG	2 cut(s)	99, 455
BseSI	GKGCMC	1 cut(s)	134
BseXI	GCAGC	6 cut(s)	165, 284, 396, 416, 419, 462
BsgI	GTGCAG	1 cut(s)	381
BsiHKAI	GWGCWC	1 cut(s)	174
BsmAI	GTCTC	1 cut(s)	156
Bso31I	GGTCTC	1 cut(s)	156
Bsp1286I	GDGCHC	2 cut(s)	134, 174
Bsp143I	GATC	2 cut(s)	58, 318
BspACI	CCGC	1 cut(s)	33
BspCNI	CTCAG	4 cut(s)	179, 447, 505, 547
BspMAI	CTGCAG	2 cut(s)	302, 480
BspMI	ACCTGC	1 cut(s)	469
BspTNI	GGTCTC	1 cut(s)	156
BsrI	ACTGG	3 cut(s)	139, 405, 510
BssMI	GATC	2 cut(s)	58, 318
Bst2UI	CCWGG	1 cut(s)	325
Bst4CI	ACNGT	1 cut(s)	264
Bst6I	CTCTTC	2 cut(s)	95, 369
BstC8I	GCNNGC	2 cut(s)	302, 428
BstDEI	CTNAG	4 cut(s)	166, 455, 492, 534
BstF5I	GGATG	1 cut(s)	550
BstH2I	RGCGCY	1 cut(s)	33
BstHHI	GCGC	1 cut(s)	32
BstKTI	GATC	2 cut(s)	61, 321
BstMAI	GTCTC	1 cut(s)	156
BstMBI	GATC	2 cut(s)	58, 318
BstMWI	GCNNNNNNNGC	7 cut(s)	178, 219, 353, 390, 404, 472, 481
BstNI	CCWGG	1 cut(s)	325
BstNSI	RCATGY	1 cut(s)	310
BstSCI	CCNGG	1 cut(s)	323
BstSFI	CTRYAG	2 cut(s)	298, 476
BstSLI	GKGCMC	1 cut(s)	134
BstV1I	GCAGC	6 cut(s)	165, 284, 396, 416, 419, 462
BstV2I	GAAGAC	1 cut(s)	56
BstXI	CCANNNNNNTGG	1 cut(s)	264
BtsCI	GGATG	1 cut(s)	550
BtsI	GCAGTG	1 cut(s)	393
BtsIMutI	CAGTG	4 cut(s)	132, 393, 398, 503
BveI	ACCTGC	1 cut(s)	469
Cac8I	GCNNGC	2 cut(s)	302, 428
CfoI	GCGC	1 cut(s)	32
Csp6I	GTAC	1 cut(s)	538
CviAII	CATG	4 cut(s)	117, 278, 307, 541
CviQI	GTAC	1 cut(s)	538
DdeI	CTNAG	4 cut(s)	166, 455, 492, 534
DpnI	GATC	2 cut(s)	60, 320
DpnII	GATC	2 cut(s)	58, 318
Eam1104I	CTCTTC	2 cut(s)	95, 369
EarI	CTCTTC	2 cut(s)	95, 369
Ecl136II	GAGCTC	1 cut(s)	172
Eco24I	GRGCYC	1 cut(s)	174
Eco31I	GGTCTC	1 cut(s)	156
Eco53kI	GAGCTC	1 cut(s)	172
Eco57I	CTGAAG	2 cut(s)	354, 383
EcoICRI	GAGCTC	1 cut(s)	172
EcoRII	CCWGG	1 cut(s)	323
EcoT38I	GRGCYC	1 cut(s)	174
FaeI	CATG	4 cut(s)	120, 281, 310, 544
FaiI	YATR	7 cut(s)	118, 143, 148, 237, 279, 308, 542
FatI	CATG	4 cut(s)	116, 277, 306, 540
Fnu4HI	GCNGC	7 cut(s)	33, 179, 298, 385, 405, 408, 476
FokI	GGATG	1 cut(s)	557
FriOI	GRGCYC	1 cut(s)	174
Fsp4HI	GCNGC	7 cut(s)	33, 179, 298, 385, 405, 408, 476
FspBI	CTAG	2 cut(s)	65, 311
GlaI	GCGC	1 cut(s)	31
GluI	GCNGC	7 cut(s)	33, 179, 298, 385, 405, 408, 476
GsuI	CTGGAG	1 cut(s)	193
HaeII	RGCGCY	1 cut(s)	33
HhaI	GCGC	1 cut(s)	32
Hin1II	CATG	4 cut(s)	120, 281, 310, 544
Hin6I	GCGC	1 cut(s)	30
HinP1I	GCGC	1 cut(s)	30
HinfI	GANTC	1 cut(s)	240
HphI	GGTGA	2 cut(s)	246, 313
Hpy188I	TCNGA	6 cut(s)	83, 169, 363, 373, 500, 555
Hpy188III	TCNNGA	2 cut(s)	18, 244
HpyAV	CCTTC	1 cut(s)	358
HpyCH4III	ACNGT	1 cut(s)	264
HpyCH4IV	ACGT	1 cut(s)	53
HpyCH4V	TGCA	4 cut(s)	300, 398, 478, 484
HpyF10VI	GCNNNNNNNGC	7 cut(s)	178, 219, 353, 390, 404, 472, 481
HpyF3I	CTNAG	4 cut(s)	166, 455, 492, 534
HpySE526I	ACGT	1 cut(s)	53
Hsp92II	CATG	4 cut(s)	120, 281, 310, 544
HspAI	GCGC	1 cut(s)	30
Kzo9I	GATC	2 cut(s)	58, 318
LmnI	GCTCC	2 cut(s)	177, 472
Lsp1109I	GCAGC	6 cut(s)	165, 284, 396, 416, 419, 462
LweI	GCATC	1 cut(s)	557
MaeI	CTAG	2 cut(s)	65, 311
MaeII	ACGT	1 cut(s)	53
MalI	GATC	2 cut(s)	60, 320
MboI	GATC	2 cut(s)	58, 318
MboII	GAAGA	7 cut(s)	6, 61, 80, 112, 340, 386, 425
MfeI	CAATTG	1 cut(s)	421
MhlI	GDGCHC	2 cut(s)	134, 174
MluCI	AATT	2 cut(s)	269, 421
MmeI	TCCRAC	3 cut(s)	61, 450, 501
MnlI	CCTC	4 cut(s)	77, 96, 121, 433
MroXI	GAANNNNTTC	1 cut(s)	53
MseI	TTAA	3 cut(s)	228, 273, 434
MspR9I	CCNGG	1 cut(s)	325
MunI	CAATTG	1 cut(s)	421
MvaI	CCWGG	1 cut(s)	325
MwoI	GCNNNNNNNGC	7 cut(s)	178, 219, 353, 390, 404, 472, 481
NdeII	GATC	2 cut(s)	58, 318
NlaIII	CATG	4 cut(s)	120, 281, 310, 544
NspI	RCATGY	1 cut(s)	310
PaqCI	CACCTGC	1 cut(s)	469
PdmI	GAANNNNTTC	1 cut(s)	53
PfeI	GAWTC	1 cut(s)	240
PkrI	GCNGC	7 cut(s)	34, 180, 299, 386, 406, 409, 477
PshBI	ATTAAT	1 cut(s)	434
Psp124BI	GAGCTC	1 cut(s)	174
Psp6I	CCWGG	1 cut(s)	323
PspGI	CCWGG	1 cut(s)	323
PstI	CTGCAG	2 cut(s)	302, 480
RsaI	GTAC	1 cut(s)	539
RsaNI	GTAC	1 cut(s)	538
SacI	GAGCTC	1 cut(s)	174
SaqAI	TTAA	3 cut(s)	228, 273, 434
SatI	GCNGC	7 cut(s)	33, 179, 298, 385, 405, 408, 476
Sau3AI	GATC	2 cut(s)	58, 318
ScrFI	CCNGG	1 cut(s)	325
SduI	GDGCHC	2 cut(s)	134, 174
SfaNI	GCATC	1 cut(s)	557
SfcI	CTRYAG	2 cut(s)	298, 476
Sse9I	AATT	2 cut(s)	269, 421
SsiI	CCGC	1 cut(s)	33
SspI	AATATT	2 cut(s)	109, 188
SspMI	CTAG	2 cut(s)	65, 311
SstI	GAGCTC	1 cut(s)	174
StyD4I	CCNGG	1 cut(s)	323
TaaI	ACNGT	1 cut(s)	264
TaiI	ACGT	1 cut(s)	56
TaqI	TCGA	3 cut(s)	47, 57, 565
TasI	AATT	2 cut(s)	269, 421
TatI	WGTACW	1 cut(s)	537
TauI	GCSGC	1 cut(s)	35
TfiI	GAWTC	1 cut(s)	240
Tru1I	TTAA	3 cut(s)	228, 273, 434
Tru9I	TTAA	3 cut(s)	228, 273, 434
TscAI	CASTG	4 cut(s)	139, 400, 405, 510
TseI	GCWGC	6 cut(s)	178, 297, 384, 404, 407, 475
TspDTI	ATGAA	2 cut(s)	205, 294
TspRI	CASTG	4 cut(s)	139, 400, 405, 510
VspI	ATTAAT	1 cut(s)	434
XapI	RAATTY	1 cut(s)	269
XceI	RCATGY	1 cut(s)	310
XmnI	GAANNNNTTC	1 cut(s)	53
XspI	CTAG	2 cut(s)	65, 311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.