Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0028309.1

Orthogroup ID

OG0013636

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1062

Gene Structure 1062 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0028309.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

atggatcaacatatctcggaggtgaaccatggcacaggtcagagttcgaggacgagaagccctgccccgtttttgtcgaaaacgtacgatttgctagaggaagaagaagaggaagacaaagatggcagcgggaagagatcaattgtgtcatggaatggagagggaaatgggtttatagtatggtctcctgctgagttctcagagctcttgttgcctaaatacttcaagcacaataacttctccagctttattcgccagcttaatacctat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

90

Amino Acids

10.31

Weight (kDa)

5.06

Isoelectric Point (pI)

77.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013636)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g09340
malus_domestica	MD00G1095900.v1.1 MD05G1313700.v1.1
prunus_persica	Prupe.4G046000_v2.0.a1 Prupe.4G046000_v2.0.a1
pyrus_communis	pycom05g29150 pycom10g24740
rosa_chinensis	RchiOBHm_Chr5g0008251
rosa_laevigata	RLG00000031554
rosa_multiflora	Rmu_sc0001387.1_g000003 Rmu_sc0028309.1_g000001
rosa_roxburghii	Rroxscaffold_1G00068230
rosa_rugosa	Rorug04G0434700
rosa_samantha	Rh5AG063100 Rh5BG059300 Rh5CG070000 Rh5DG058900
rosa_wichuraiana	Rw5G005790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	129
AclWI	GGATC	1 cut(s)	12
AfaI	GTAC	1 cut(s)	86
AgsI	TTSAA	1 cut(s)	226
AluBI	AGCT	3 cut(s)	205, 246, 259
AluI	AGCT	3 cut(s)	205, 246, 259
Alw21I	GWGCWC	1 cut(s)	207
Alw26I	GTCTC	1 cut(s)	189
AlwI	GGATC	1 cut(s)	12
ApeKI	GCWGC	1 cut(s)	126
AsuHPI	GGTGA	1 cut(s)	34
BanII	GRGCYC	1 cut(s)	207
BbsI	GAAGAC	1 cut(s)	120
Bbv12I	GWGCWC	1 cut(s)	207
BbvI	GCAGC	1 cut(s)	138
BccI	CCATC	1 cut(s)	116
BcoDI	GTCTC	1 cut(s)	189
BfaI	CTAG	1 cut(s)	95
BisI	GCNGC	1 cut(s)	127
BlsI	GCNGC	1 cut(s)	128
BpiI	GAAGAC	1 cut(s)	120
BpmI	CTGGAG	1 cut(s)	226
BsaI	GGTCTC	1 cut(s)	189
BsaJI	CCNNGG	1 cut(s)	28
BseDI	CCNNGG	1 cut(s)	28
BseMII	CTCAG	2 cut(s)	183, 213
BseXI	GCAGC	1 cut(s)	138
BsiHKAI	GWGCWC	1 cut(s)	207
BsiWI	CGTACG	1 cut(s)	84
BsmAI	GTCTC	1 cut(s)	189
Bso31I	GGTCTC	1 cut(s)	189
Bsp1286I	GDGCHC	1 cut(s)	207
Bsp143I	GATC	2 cut(s)	4, 137
Bsp19I	CCATGG	1 cut(s)	28
BspACI	CCGC	1 cut(s)	129
BspCNI	CTCAG	2 cut(s)	184, 212
BspPI	GGATC	1 cut(s)	12
BspTNI	GGTCTC	1 cut(s)	189
BssECI	CCNNGG	1 cut(s)	28
BssMI	GATC	2 cut(s)	4, 137
BssT1I	CCWWGG	1 cut(s)	28
Bst6I	CTCTTC	2 cut(s)	102, 128
BstC8I	GCNNGC	1 cut(s)	257
BstDEI	CTNAG	2 cut(s)	192, 199
BstDSI	CCRYGG	1 cut(s)	28
BstKTI	GATC	2 cut(s)	7, 140
BstMAI	GTCTC	1 cut(s)	189
BstMBI	GATC	2 cut(s)	4, 137
BstMWI	GCNNNNNNNGC	2 cut(s)	211, 252
BstV1I	GCAGC	1 cut(s)	138
BstV2I	GAAGAC	1 cut(s)	120
BtgI	CCRYGG	1 cut(s)	28
Cac8I	GCNNGC	1 cut(s)	257
Csp6I	GTAC	1 cut(s)	85
CviAII	CATG	2 cut(s)	29, 150
CviJI	RGCY	4 cut(s)	60, 205, 246, 259
CviKI_1	RGCY	4 cut(s)	60, 205, 246, 259
CviQI	GTAC	1 cut(s)	85
DdeI	CTNAG	2 cut(s)	192, 199
DpnI	GATC	2 cut(s)	6, 139
DpnII	GATC	2 cut(s)	4, 137
Eam1104I	CTCTTC	2 cut(s)	102, 128
EarI	CTCTTC	2 cut(s)	102, 128
Ecl136II	GAGCTC	1 cut(s)	205
Eco130I	CCWWGG	1 cut(s)	28
Eco24I	GRGCYC	1 cut(s)	207
Eco31I	GGTCTC	1 cut(s)	189
Eco53kI	GAGCTC	1 cut(s)	205
EcoICRI	GAGCTC	1 cut(s)	205
EcoT14I	CCWWGG	1 cut(s)	28
EcoT38I	GRGCYC	1 cut(s)	207
ErhI	CCWWGG	1 cut(s)	28
FaeI	CATG	2 cut(s)	32, 153
FaiI	YATR	5 cut(s)	12, 30, 151, 176, 181
FatI	CATG	2 cut(s)	28, 149
FauI	CCCGC	1 cut(s)	122
Fnu4HI	GCNGC	1 cut(s)	127
FriOI	GRGCYC	1 cut(s)	207
Fsp4HI	GCNGC	1 cut(s)	127
FspBI	CTAG	1 cut(s)	95
GluI	GCNGC	1 cut(s)	127
GsuI	CTGGAG	1 cut(s)	226
Hin1II	CATG	2 cut(s)	32, 153
HphI	GGTGA	1 cut(s)	34
Hpy166II	GTNNAC	1 cut(s)	25
Hpy188I	TCNGA	3 cut(s)	19, 42, 202
Hpy8I	GTNNAC	1 cut(s)	25
HpyCH4IV	ACGT	1 cut(s)	83
HpyF10VI	GCNNNNNNNGC	2 cut(s)	211, 252
HpyF3I	CTNAG	2 cut(s)	192, 199
HpySE526I	ACGT	1 cut(s)	83
Hsp92II	CATG	2 cut(s)	32, 153
Kzo9I	GATC	2 cut(s)	4, 137
LpnPI	CCDG	4 cut(s)	21, 75, 201, 256
Lsp1109I	GCAGC	1 cut(s)	138
MaeI	CTAG	1 cut(s)	95
MaeII	ACGT	1 cut(s)	83
MalI	GATC	2 cut(s)	6, 139
MboI	GATC	2 cut(s)	4, 137
MboII	GAAGA	5 cut(s)	113, 116, 119, 125, 145
MfeI	CAATTG	1 cut(s)	141
MhlI	GDGCHC	1 cut(s)	207
MluCI	AATT	1 cut(s)	141
MnlI	CCTC	5 cut(s)	13, 42, 91, 103, 154
MseI	TTAA	1 cut(s)	261
MspA1I	CMGCKG	1 cut(s)	129
MunI	CAATTG	1 cut(s)	141
MwoI	GCNNNNNNNGC	2 cut(s)	211, 252
NcoI	CCATGG	1 cut(s)	28
NdeII	GATC	2 cut(s)	4, 137
NlaIII	CATG	2 cut(s)	32, 153
Pfl23II	CGTACG	1 cut(s)	84
PkrI	GCNGC	1 cut(s)	128
Psp124BI	GAGCTC	1 cut(s)	207
PspLI	CGTACG	1 cut(s)	84
RsaI	GTAC	1 cut(s)	86
RsaNI	GTAC	1 cut(s)	85
SacI	GAGCTC	1 cut(s)	207
SaqAI	TTAA	1 cut(s)	261
SatI	GCNGC	1 cut(s)	127
Sau3AI	GATC	2 cut(s)	4, 137
SduI	GDGCHC	1 cut(s)	207
SetI	ASST	7 cut(s)	24, 40, 86, 207, 248, 261, 269
Sse9I	AATT	1 cut(s)	141
SsiI	CCGC	1 cut(s)	129
SspMI	CTAG	1 cut(s)	95
SstI	GAGCTC	1 cut(s)	207
StyI	CCWWGG	1 cut(s)	28
TaiI	ACGT	1 cut(s)	86
TaqI	TCGA	2 cut(s)	47, 77
TasI	AATT	1 cut(s)	141
Tru1I	TTAA	1 cut(s)	261
Tru9I	TTAA	1 cut(s)	261
TseI	GCWGC	1 cut(s)	126
XspI	CTAG	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.