Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0013636

Physical Location & Seq

Genomic Coordinates Reverse (-)

2190038 .. 2192208

Gene Structure 2171 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G046000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGCGGCTACAACTTCTTCAGGCCAATCTCCGAGGACAAGAAGCCCTGCCCCTTTCTTGTCCAAGACATATGATTTGCTAGAAGAAGGTGCAGCAGAGGAAGGAGATAGTGGAAAGAAGATTGTGTCTTGGAATGCAGAGGGCTCTGGATTTGTAGTTTGGTCTCCTGCTGAGTTCTCAGAGCTCTTGCTGCCTAAATATTTCAAGCACAATAATTTCTCCAGCTTCATCCGCCAGCTTAATACTTATCAGGGGTTCAAGAAAACATCACCAAGACAATGGGAATTTAAGCATGAAAGGTTCCAGAAAGGCTGTAGGCATATGCTGGTGGAGATCACAAGGAAGAAATGTGAGCCAAGTGCATTTCCAGTGTATCTAAAGGCTTCAGAAGAGAGTGGTAGCAGCAACACAGCTGTGGCTGCAGCAGAGGAAAATAATTGTTTGCTGTTAATGGAGGAGAACAAGAACCTCAGGAAACAGAAACTGGAGCTGCAGATGCAAATATCTCAGTTTAAAGCCTTAGAAATGAAGCTGTTGGATTGCCTAGCGCAGAACATGGAAGATCATCAGAAGAATAAAGTTCGATGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

197

Amino Acids

22.36

Weight (kDa)

8.75

Isoelectric Point (pI)

54.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013636)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g09340
malus_domestica	MD00G1095900.v1.1 MD05G1313700.v1.1
prunus_persica	Prupe.4G046000_v2.0.a1 Prupe.4G046000_v2.0.a1
pyrus_communis	pycom05g29150 pycom10g24740
rosa_chinensis	RchiOBHm_Chr5g0008251
rosa_laevigata	RLG00000031554
rosa_multiflora	Rmu_sc0001387.1_g000003 Rmu_sc0028309.1_g000001
rosa_roxburghii	Rroxscaffold_1G00068230
rosa_rugosa	Rorug04G0434700
rosa_samantha	Rh5AG063100 Rh5BG059300 Rh5CG070000 Rh5DG058900
rosa_wichuraiana	Rw5G005790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	5, 232
AcsI	RAATTY	1 cut(s)	284
AcuI	CTGAAG	1 cut(s)	369
AgsI	TTSAA	2 cut(s)	205, 259
AleI	CACNNNNGTG	1 cut(s)	413
AluBI	AGCT	6 cut(s)	184, 225, 238, 413, 490, 532
AluI	AGCT	6 cut(s)	184, 225, 238, 413, 490, 532
Alw21I	GWGCWC	1 cut(s)	186
Alw26I	GTCTC	1 cut(s)	168
AlwNI	CAGNNNCTG	1 cut(s)	484
AoxI	GGCC	1 cut(s)	22
ApeKI	GCWGC	6 cut(s)	92, 190, 402, 419, 422, 490
ApoI	RAATTY	1 cut(s)	284
ArsI	GACNNNNNNTTYG	2 cut(s)	58, 90
AspLEI	GCGC	1 cut(s)	550
AsuHPI	GGTGA	1 cut(s)	261
AxyI	CCTNAGG	1 cut(s)	470
BanII	GRGCYC	2 cut(s)	146, 186
Bbv12I	GWGCWC	1 cut(s)	186
BbvI	GCAGC	6 cut(s)	104, 177, 406, 414, 434, 477
BcoDI	GTCTC	1 cut(s)	168
BfaI	CTAG	2 cut(s)	80, 545
BfmI	CTRYAG	3 cut(s)	313, 420, 491
BisI	GCNGC	7 cut(s)	6, 93, 191, 403, 420, 423, 491
BlsI	GCNGC	7 cut(s)	7, 94, 192, 404, 421, 424, 492
BmiI	GGNNCC	1 cut(s)	302
BmsI	GCATC	2 cut(s)	486, 575
BpmI	CTGGAG	2 cut(s)	205, 506
BsaI	GGTCTC	1 cut(s)	168
BsaJI	CCNNGG	1 cut(s)	32
Bse1I	ACTGG	2 cut(s)	368, 489
Bse21I	CCTNAGG	1 cut(s)	470
BseDI	CCNNGG	1 cut(s)	32
BseGI	GGATG	1 cut(s)	228
BseMII	CTCAG	4 cut(s)	162, 192, 484, 521
BseNI	ACTGG	2 cut(s)	368, 489
BseRI	GAGGAG	1 cut(s)	470
BseXI	GCAGC	6 cut(s)	104, 177, 406, 414, 434, 477
BsgI	GTGCAG	1 cut(s)	111
BshFI	GGCC	1 cut(s)	24
BsiHKAI	GWGCWC	1 cut(s)	186
BsmAI	GTCTC	1 cut(s)	168
BsmI	GAATGC	1 cut(s)	139
BsnI	GGCC	1 cut(s)	24
Bso31I	GGTCTC	1 cut(s)	168
Bsp1286I	GDGCHC	2 cut(s)	146, 186
Bsp143I	GATC	2 cut(s)	333, 562
BspACI	CCGC	2 cut(s)	5, 232
BspANI	GGCC	1 cut(s)	24
BspCNI	CTCAG	4 cut(s)	163, 191, 483, 520
BspLI	GGNNCC	1 cut(s)	302
BspMAI	CTGCAG	2 cut(s)	424, 495
BspTNI	GGTCTC	1 cut(s)	168
BsrI	ACTGG	2 cut(s)	368, 489
BssECI	CCNNGG	1 cut(s)	32
BssMI	GATC	2 cut(s)	333, 562
Bst6I	CTCTTC	1 cut(s)	384
BstC8I	GCNNGC	1 cut(s)	236
BstDEI	CTNAG	5 cut(s)	171, 178, 470, 507, 520
BstF5I	GGATG	1 cut(s)	228
BstHHI	GCGC	1 cut(s)	550
BstKTI	GATC	2 cut(s)	336, 565
BstMAI	GTCTC	1 cut(s)	168
BstMBI	GATC	2 cut(s)	333, 562
BstMWI	GCNNNNNNNGC	4 cut(s)	190, 231, 419, 496
BstSFI	CTRYAG	3 cut(s)	313, 420, 491
BstV1I	GCAGC	6 cut(s)	104, 177, 406, 414, 434, 477
BstXI	CCANNNNNNTGG	1 cut(s)	279
Bsu36I	CCTNAGG	1 cut(s)	470
BsuRI	GGCC	1 cut(s)	24
BtsCI	GGATG	1 cut(s)	228
BtsIMutI	CAGTG	1 cut(s)	375
Cac8I	GCNNGC	1 cut(s)	236
CaiI	CAGNNNCTG	1 cut(s)	484
CfoI	GCGC	1 cut(s)	550
CviAII	CATG	2 cut(s)	293, 556
DdeI	CTNAG	5 cut(s)	171, 178, 470, 507, 520
DpnI	GATC	2 cut(s)	335, 564
DpnII	GATC	2 cut(s)	333, 562
DraI	TTTAAA	1 cut(s)	514
Eam1104I	CTCTTC	1 cut(s)	384
EarI	CTCTTC	1 cut(s)	384
EciI	GGCGGA	1 cut(s)	221
Ecl136II	GAGCTC	1 cut(s)	184
Eco24I	GRGCYC	2 cut(s)	146, 186
Eco31I	GGTCTC	1 cut(s)	168
Eco53kI	GAGCTC	1 cut(s)	184
Eco57I	CTGAAG	1 cut(s)	369
Eco81I	CCTNAGG	1 cut(s)	470
EcoICRI	GAGCTC	1 cut(s)	184
EcoT38I	GRGCYC	2 cut(s)	146, 186
FaeI	CATG	2 cut(s)	296, 559
FaiI	YATR	6 cut(s)	70, 72, 294, 321, 323, 557
FatI	CATG	2 cut(s)	292, 555
FauNDI	CATATG	2 cut(s)	70, 321
Fnu4HI	GCNGC	7 cut(s)	6, 93, 191, 403, 420, 423, 491
FokI	GGATG	1 cut(s)	215
FriOI	GRGCYC	2 cut(s)	146, 186
Fsp4HI	GCNGC	7 cut(s)	6, 93, 191, 403, 420, 423, 491
FspBI	CTAG	2 cut(s)	80, 545
GlaI	GCGC	1 cut(s)	549
GluI	GCNGC	7 cut(s)	6, 93, 191, 403, 420, 423, 491
GsuI	CTGGAG	2 cut(s)	205, 506
HaeIII	GGCC	1 cut(s)	24
HhaI	GCGC	1 cut(s)	550
Hin1II	CATG	2 cut(s)	296, 559
Hin6I	GCGC	1 cut(s)	548
HinP1I	GCGC	1 cut(s)	548
HphI	GGTGA	1 cut(s)	261
Hpy188I	TCNGA	4 cut(s)	33, 181, 388, 570
Hpy188III	TCNNGA	4 cut(s)	147, 259, 304, 472
HpyAV	CCTTC	2 cut(s)	80, 95
HpyCH4V	TGCA	6 cut(s)	92, 137, 362, 422, 493, 499
HpyF10VI	GCNNNNNNNGC	4 cut(s)	190, 231, 419, 496
HpyF3I	CTNAG	5 cut(s)	171, 178, 470, 507, 520
Hsp92II	CATG	2 cut(s)	296, 559
HspAI	GCGC	1 cut(s)	548
Kzo9I	GATC	2 cut(s)	333, 562
LmnI	GCTCC	1 cut(s)	487
Lsp1109I	GCAGC	6 cut(s)	104, 177, 406, 414, 434, 477
LweI	GCATC	2 cut(s)	486, 575
MaeI	CTAG	2 cut(s)	80, 545
MalI	GATC	2 cut(s)	335, 564
MboI	GATC	2 cut(s)	333, 562
MboII	GAAGA	7 cut(s)	9, 95, 130, 355, 401, 572, 583
MhlI	GDGCHC	2 cut(s)	146, 186
MluCI	AATT	3 cut(s)	214, 284, 436
MmeI	TCCRAC	1 cut(s)	516
MnlI	CCTC	6 cut(s)	27, 91, 133, 421, 448, 479
MseI	TTAA	4 cut(s)	240, 288, 449, 513
MslI	CAYNNNNRTG	1 cut(s)	413
MspA1I	CMGCKG	1 cut(s)	413
Mva1269I	GAATGC	1 cut(s)	139
MwoI	GCNNNNNNNGC	4 cut(s)	190, 231, 419, 496
NdeI	CATATG	2 cut(s)	70, 321
NdeII	GATC	2 cut(s)	333, 562
NlaIII	CATG	2 cut(s)	296, 559
NlaIV	GGNNCC	1 cut(s)	302
OliI	CACNNNNGTG	1 cut(s)	413
PctI	GAATGC	1 cut(s)	139
PkrI	GCNGC	7 cut(s)	7, 94, 192, 404, 421, 424, 492
Psp124BI	GAGCTC	1 cut(s)	186
PspN4I	GGNNCC	1 cut(s)	302
PstI	CTGCAG	2 cut(s)	424, 495
PstNI	CAGNNNCTG	1 cut(s)	484
PvuII	CAGCTG	1 cut(s)	413
RseI	CAYNNNNRTG	1 cut(s)	413
SacI	GAGCTC	1 cut(s)	186
SaqAI	TTAA	4 cut(s)	240, 288, 449, 513
SatI	GCNGC	7 cut(s)	6, 93, 191, 403, 420, 423, 491
Sau3AI	GATC	2 cut(s)	333, 562
SduI	GDGCHC	2 cut(s)	146, 186
SetI	ASST	9 cut(s)	91, 186, 227, 240, 302, 415, 471, 492, 534
SfaNI	GCATC	2 cut(s)	486, 575
SfcI	CTRYAG	3 cut(s)	313, 420, 491
SmiMI	CAYNNNNRTG	1 cut(s)	413
Sse9I	AATT	3 cut(s)	214, 284, 436
SsiI	CCGC	2 cut(s)	5, 232
SspI	AATATT	1 cut(s)	200
SspMI	CTAG	2 cut(s)	80, 545
SstI	GAGCTC	1 cut(s)	186
TaqI	TCGA	1 cut(s)	583
TasI	AATT	3 cut(s)	214, 284, 436
TauI	GCSGC	1 cut(s)	8
Tru1I	TTAA	4 cut(s)	240, 288, 449, 513
Tru9I	TTAA	4 cut(s)	240, 288, 449, 513
TscAI	CASTG	1 cut(s)	375
TseI	GCWGC	6 cut(s)	92, 190, 402, 419, 422, 490
TspDTI	ATGAA	3 cut(s)	217, 309, 542
TspRI	CASTG	1 cut(s)	375
XapI	RAATTY	1 cut(s)	284
XspI	CTAG	2 cut(s)	80, 545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.