Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0013636

Physical Location & Seq

Genomic Coordinates Forward (+)

44418658 .. 44421422

Gene Structure 2765 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1313700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGCTGAAACTTCTTCCCGAACAAGAAGCGCCGCCCCGTTTCTGTCGAAGACGTTCGATCTGCTAGAAGAACAAGATGTCGGAGGAGATGATGGTGGGAAGAGGAATACTGTGTCATGGAATGTAGAGGGCACTGGATTTATAGTATGGTCTCCTGCTGATTTCTCAGAGCTCCTGTTGCCTAAATATTTCAAGCACAACAATTTCTCCAGCTTCATTCGCCAACTTAACACCTATGGATTCAAGAAAACATCACCAAAACTGTGGGAATTTAAGCACGAAAAGTTCCAAAAGGGCTGCAGGCACATGCTAGTTGAGATCACCAGGAAGAAATGCGAACCAAGTGCTTTTCCAGCGTATCTGAAGGCTTCAGAAGAGAGTGAGAGCACAAGCACTGCACTGGCAGCAGCAGAAGAAAACAATTGCCTGCTATTAATGGAGGAGAATAAGAACCTGAGAAAACAGCAGTTGGAGCTGCAGGTGCAAATAGCTCAGTTCAAAACCCTGGAAAATAAGCTGTTGGATTGCGTAGCCCAGTACATGGATGACCATCGGAACAAAGCTCGATGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

191

Amino Acids

21.81

Weight (kDa)

7.62

Isoelectric Point (pI)

54.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSF_DNA-bind	PF00447	14 - 110	1.8e-25	HSF-type DNA-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013636)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g09340
malus_domestica	MD00G1095900.v1.1 MD05G1313700.v1.1
prunus_persica	Prupe.4G046000_v2.0.a1 Prupe.4G046000_v2.0.a1
pyrus_communis	pycom05g29150 pycom10g24740
rosa_chinensis	RchiOBHm_Chr5g0008251
rosa_laevigata	RLG00000031554
rosa_multiflora	Rmu_sc0001387.1_g000003 Rmu_sc0028309.1_g000001
rosa_roxburghii	Rroxscaffold_1G00068230
rosa_rugosa	Rorug04G0434700
rosa_samantha	Rh5AG063100 Rh5BG059300 Rh5CG070000 Rh5DG058900
rosa_wichuraiana	Rw5G005790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	469
Acc36I	ACCTGC	1 cut(s)	469
AccB7I	CCANNNNNTGG	1 cut(s)	541
AciI	CCGC	1 cut(s)	33
AcsI	RAATTY	1 cut(s)	269
AcuI	CTGAAG	2 cut(s)	354, 383
AfaI	GTAC	1 cut(s)	539
AfiI	CCNNNNNNNGG	1 cut(s)	541
AgsI	TTSAA	3 cut(s)	193, 244, 499
AjnI	CCWGG	2 cut(s)	323, 504
AluBI	AGCT	6 cut(s)	172, 213, 475, 491, 517, 563
AluI	AGCT	6 cut(s)	172, 213, 475, 491, 517, 563
Alw21I	GWGCWC	2 cut(s)	174, 389
Alw26I	GTCTC	1 cut(s)	156
ApeKI	GCWGC	4 cut(s)	297, 404, 407, 475
ApoI	RAATTY	1 cut(s)	269
AseI	ATTAAT	1 cut(s)	434
Asp700I	GAANNNNTTC	1 cut(s)	53
AspLEI	GCGC	1 cut(s)	32
AsuHPI	GGTGA	2 cut(s)	246, 313
BaeGI	GKGCMC	1 cut(s)	134
BanII	GRGCYC	1 cut(s)	174
BbsI	GAAGAC	1 cut(s)	56
Bbv12I	GWGCWC	2 cut(s)	174, 389
BbvI	GCAGC	4 cut(s)	284, 416, 419, 462
BccI	CCATC	2 cut(s)	86, 558
BcgI	CGANNNNNNTGC	2 cut(s)	326, 360
BciT130I	CCWGG	2 cut(s)	325, 506
BcoDI	GTCTC	1 cut(s)	156
BfaI	CTAG	2 cut(s)	65, 311
BfmI	CTRYAG	2 cut(s)	298, 476
BfoI	RGCGCY	1 cut(s)	33
BfuAI	ACCTGC	1 cut(s)	469
BisI	GCNGC	5 cut(s)	33, 298, 405, 408, 476
BlsI	GCNGC	5 cut(s)	34, 299, 406, 409, 477
Bme1390I	CCNGG	2 cut(s)	325, 506
BmrFI	CCNGG	2 cut(s)	325, 506
BmrI	ACTGGG	1 cut(s)	529
BmsI	GCATC	1 cut(s)	557
BmuI	ACTGGG	1 cut(s)	529
BpiI	GAAGAC	1 cut(s)	56
BpmI	CTGGAG	1 cut(s)	193
BsaBI	GATNNNNATC	1 cut(s)	549
BsaI	GGTCTC	1 cut(s)	156
BsaJI	CCNNGG	1 cut(s)	504
BsaXI	ACNNNNNCTCC	2 cut(s)	191, 221
Bsc4I	CCNNNNNNNGG	1 cut(s)	541
Bse1I	ACTGG	3 cut(s)	139, 405, 535
Bse8I	GATNNNNATC	1 cut(s)	549
BseBI	CCWGG	2 cut(s)	325, 506
BseDI	CCNNGG	1 cut(s)	504
BseGI	GGATG	1 cut(s)	550
BseJI	GATNNNNATC	1 cut(s)	549
BseLI	CCNNNNNNNGG	1 cut(s)	541
BseMII	CTCAG	3 cut(s)	180, 446, 506
BseNI	ACTGG	3 cut(s)	139, 405, 535
BseRI	GAGGAG	2 cut(s)	99, 455
BseSI	GKGCMC	1 cut(s)	134
BseXI	GCAGC	4 cut(s)	284, 416, 419, 462
BsgI	GTGCAG	1 cut(s)	381
BsiHKAI	GWGCWC	2 cut(s)	174, 389
BslI	CCNNNNNNNGG	1 cut(s)	541
BsmAI	GTCTC	1 cut(s)	156
Bso31I	GGTCTC	1 cut(s)	156
Bsp1286I	GDGCHC	3 cut(s)	134, 174, 389
Bsp143I	GATC	2 cut(s)	58, 318
BspACI	CCGC	1 cut(s)	33
BspCNI	CTCAG	3 cut(s)	179, 447, 505
BspMAI	CTGCAG	2 cut(s)	302, 480
BspMI	ACCTGC	1 cut(s)	469
BspTNI	GGTCTC	1 cut(s)	156
BsrI	ACTGG	3 cut(s)	139, 405, 535
BssECI	CCNNGG	1 cut(s)	504
BssMI	GATC	2 cut(s)	58, 318
Bst2UI	CCWGG	2 cut(s)	325, 506
Bst4CI	ACNGT	2 cut(s)	112, 264
Bst6I	CTCTTC	2 cut(s)	95, 369
BstC8I	GCNNGC	2 cut(s)	302, 428
BstDEI	CTNAG	3 cut(s)	166, 455, 492
BstF5I	GGATG	1 cut(s)	550
BstH2I	RGCGCY	1 cut(s)	33
BstHHI	GCGC	1 cut(s)	32
BstKTI	GATC	2 cut(s)	61, 321
BstMAI	GTCTC	1 cut(s)	156
BstMBI	GATC	2 cut(s)	58, 318
BstMWI	GCNNNNNNNGC	6 cut(s)	178, 219, 353, 404, 472, 481
BstNI	CCWGG	2 cut(s)	325, 506
BstNSI	RCATGY	1 cut(s)	310
BstSCI	CCNGG	2 cut(s)	323, 504
BstSFI	CTRYAG	2 cut(s)	298, 476
BstSLI	GKGCMC	1 cut(s)	134
BstV1I	GCAGC	4 cut(s)	284, 416, 419, 462
BstV2I	GAAGAC	1 cut(s)	56
BstXI	CCANNNNNNTGG	1 cut(s)	264
BtsCI	GGATG	1 cut(s)	550
BtsI	GCAGTG	1 cut(s)	393
BtsIMutI	CAGTG	3 cut(s)	132, 393, 398
BveI	ACCTGC	1 cut(s)	469
Cac8I	GCNNGC	2 cut(s)	302, 428
CfoI	GCGC	1 cut(s)	32
Csp6I	GTAC	1 cut(s)	538
CviAII	CATG	3 cut(s)	117, 307, 541
CviQI	GTAC	1 cut(s)	538
DdeI	CTNAG	3 cut(s)	166, 455, 492
DpnI	GATC	2 cut(s)	60, 320
DpnII	GATC	2 cut(s)	58, 318
Eam1104I	CTCTTC	2 cut(s)	95, 369
EarI	CTCTTC	2 cut(s)	95, 369
Ecl136II	GAGCTC	1 cut(s)	172
Eco24I	GRGCYC	1 cut(s)	174
Eco31I	GGTCTC	1 cut(s)	156
Eco53kI	GAGCTC	1 cut(s)	172
Eco57I	CTGAAG	2 cut(s)	354, 383
EcoICRI	GAGCTC	1 cut(s)	172
EcoRII	CCWGG	2 cut(s)	323, 504
EcoT38I	GRGCYC	1 cut(s)	174
FaeI	CATG	3 cut(s)	120, 310, 544
FaiI	YATR	6 cut(s)	118, 143, 148, 237, 308, 542
FatI	CATG	3 cut(s)	116, 306, 540
Fnu4HI	GCNGC	5 cut(s)	33, 298, 405, 408, 476
FokI	GGATG	1 cut(s)	557
FriOI	GRGCYC	1 cut(s)	174
Fsp4HI	GCNGC	5 cut(s)	33, 298, 405, 408, 476
FspBI	CTAG	2 cut(s)	65, 311
GlaI	GCGC	1 cut(s)	31
GluI	GCNGC	5 cut(s)	33, 298, 405, 408, 476
GsuI	CTGGAG	1 cut(s)	193
HaeII	RGCGCY	1 cut(s)	33
HhaI	GCGC	1 cut(s)	32
Hin1II	CATG	3 cut(s)	120, 310, 544
Hin6I	GCGC	1 cut(s)	30
HinP1I	GCGC	1 cut(s)	30
HinfI	GANTC	1 cut(s)	240
HphI	GGTGA	2 cut(s)	246, 313
Hpy188I	TCNGA	5 cut(s)	83, 169, 363, 373, 555
Hpy188III	TCNNGA	2 cut(s)	18, 244
HpyAV	CCTTC	1 cut(s)	358
HpyCH4III	ACNGT	2 cut(s)	112, 264
HpyCH4IV	ACGT	1 cut(s)	53
HpyCH4V	TGCA	4 cut(s)	300, 398, 478, 484
HpyF10VI	GCNNNNNNNGC	6 cut(s)	178, 219, 353, 404, 472, 481
HpyF3I	CTNAG	3 cut(s)	166, 455, 492
HpySE526I	ACGT	1 cut(s)	53
Hsp92II	CATG	3 cut(s)	120, 310, 544
HspAI	GCGC	1 cut(s)	30
Kzo9I	GATC	2 cut(s)	58, 318
LmnI	GCTCC	2 cut(s)	177, 472
Lsp1109I	GCAGC	4 cut(s)	284, 416, 419, 462
LweI	GCATC	1 cut(s)	557
MaeI	CTAG	2 cut(s)	65, 311
MaeII	ACGT	1 cut(s)	53
MalI	GATC	2 cut(s)	60, 320
MboI	GATC	2 cut(s)	58, 318
MboII	GAAGA	7 cut(s)	6, 61, 80, 112, 340, 386, 425
MfeI	CAATTG	1 cut(s)	421
MhlI	GDGCHC	3 cut(s)	134, 174, 389
MluCI	AATT	3 cut(s)	202, 269, 421
MmeI	TCCRAC	3 cut(s)	61, 450, 501
MnlI	CCTC	4 cut(s)	77, 96, 121, 433
MroXI	GAANNNNTTC	1 cut(s)	53
MseI	TTAA	3 cut(s)	228, 273, 434
MspR9I	CCNGG	2 cut(s)	325, 506
MunI	CAATTG	1 cut(s)	421
MvaI	CCWGG	2 cut(s)	325, 506
MwoI	GCNNNNNNNGC	6 cut(s)	178, 219, 353, 404, 472, 481
NdeII	GATC	2 cut(s)	58, 318
NlaIII	CATG	3 cut(s)	120, 310, 544
NspI	RCATGY	1 cut(s)	310
PaqCI	CACCTGC	1 cut(s)	469
PdmI	GAANNNNTTC	1 cut(s)	53
PfeI	GAWTC	1 cut(s)	240
PflMI	CCANNNNNTGG	1 cut(s)	541
PkrI	GCNGC	5 cut(s)	34, 299, 406, 409, 477
PshBI	ATTAAT	1 cut(s)	434
Psp124BI	GAGCTC	1 cut(s)	174
Psp6I	CCWGG	2 cut(s)	323, 504
PspGI	CCWGG	2 cut(s)	323, 504
PstI	CTGCAG	2 cut(s)	302, 480
RsaI	GTAC	1 cut(s)	539
RsaNI	GTAC	1 cut(s)	538
SacI	GAGCTC	1 cut(s)	174
SaqAI	TTAA	3 cut(s)	228, 273, 434
SatI	GCNGC	5 cut(s)	33, 298, 405, 408, 476
Sau3AI	GATC	2 cut(s)	58, 318
ScrFI	CCNGG	2 cut(s)	325, 506
SduI	GDGCHC	3 cut(s)	134, 174, 389
SfaNI	GCATC	1 cut(s)	557
SfcI	CTRYAG	2 cut(s)	298, 476
Sse9I	AATT	3 cut(s)	202, 269, 421
SsiI	CCGC	1 cut(s)	33
SspI	AATATT	1 cut(s)	188
SspMI	CTAG	2 cut(s)	65, 311
SstI	GAGCTC	1 cut(s)	174
StyD4I	CCNGG	2 cut(s)	323, 504
TaaI	ACNGT	2 cut(s)	112, 264
TaiI	ACGT	1 cut(s)	56
TaqI	TCGA	3 cut(s)	47, 57, 565
TasI	AATT	3 cut(s)	202, 269, 421
TatI	WGTACW	1 cut(s)	537
TauI	GCSGC	1 cut(s)	35
TfiI	GAWTC	1 cut(s)	240
Tru1I	TTAA	3 cut(s)	228, 273, 434
Tru9I	TTAA	3 cut(s)	228, 273, 434
TscAI	CASTG	3 cut(s)	139, 400, 405
TseI	GCWGC	4 cut(s)	297, 404, 407, 475
TspDTI	ATGAA	1 cut(s)	205
TspRI	CASTG	3 cut(s)	139, 400, 405
Van91I	CCANNNNNTGG	1 cut(s)	541
VspI	ATTAAT	1 cut(s)	434
XapI	RAATTY	1 cut(s)	269
XceI	RCATGY	1 cut(s)	310
XmnI	GAANNNNTTC	1 cut(s)	53
XspI	CTAG	2 cut(s)	65, 311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.