Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0013636

Physical Location & Seq

Genomic Coordinates Forward (+)

89493427 .. 89495734

Gene Structure 2308 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00068230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGTGTATGGATCAACATATCTCGGAGGTGAACCATGGCACAAGTCAGAGTTCGAGGACGAGAAGCCCTGCCCCGTTTTTGTCGAAAACGTACGATTTGCTAGAGGAAGAAGAAGAGGAAGACGAAGATGGCAGCGGAAAGAGATCAATTGTGTCATGGAATGGAGAGGGAAATGGGTTTATAGTATGGTCTCCTGCTGAGTTCTCAGAGCTCTTGTTGCCTAAATACTTCAAGCACAATAACTTCTCCAGCTTTATTCGCCAGCTTAATACCTATGGATTCAAGAAAACATCACCAAAACGATGGGAATTCAAACACGAGAAGTTCCAGAAGGGATGCCGGCATCTGCTACTGGAGATCAATCGGAAGAAGTGCGAACCGAGCGCTTTTCCGGTGTATCTAAAGGCTTCGGAAGAAAGCACTAGTGCTACTGGCCTTAATCGAAGCATGAGCAATGCAGCAGAACAAGAGAATCAGTCTTTGCTGCTAATGGAGGAGAACAAGAACCTAAGGAAGCAGAAAATGGAGCTTCAGATGCAACTTTCTCAGTTCAAAGCACTAGAAAGTAAGCTGTTGGATTGTGTGGGTCAGTATATGCAAGACCATCACAATCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

205

Amino Acids

23.82

Weight (kDa)

6.67

Isoelectric Point (pI)

74.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSF_DNA-bind	PF00447	26 - 123	8.3e-27	HSF-type DNA-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013636)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g09340
malus_domestica	MD00G1095900.v1.1 MD05G1313700.v1.1
prunus_persica	Prupe.4G046000_v2.0.a1 Prupe.4G046000_v2.0.a1
pyrus_communis	pycom05g29150 pycom10g24740
rosa_chinensis	RchiOBHm_Chr5g0008251
rosa_laevigata	RLG00000031554
rosa_multiflora	Rmu_sc0001387.1_g000003 Rmu_sc0028309.1_g000001
rosa_roxburghii	Rroxscaffold_1G00068230
rosa_rugosa	Rorug04G0434700
rosa_samantha	Rh5AG063100 Rh5BG059300 Rh5CG070000 Rh5DG058900
rosa_wichuraiana	Rw5G005790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	135
AclWI	GGATC	1 cut(s)	18
AcsI	RAATTY	1 cut(s)	308
AcuI	CTGAAG	1 cut(s)	515
AfaI	GTAC	1 cut(s)	92
AfeI	AGCGCT	1 cut(s)	385
AgsI	TTSAA	4 cut(s)	232, 283, 313, 553
AhlI	ACTAGT	1 cut(s)	422
AluBI	AGCT	5 cut(s)	211, 252, 265, 529, 571
AluI	AGCT	5 cut(s)	211, 252, 265, 529, 571
Alw21I	GWGCWC	1 cut(s)	213
Alw26I	GTCTC	1 cut(s)	195
AlwI	GGATC	1 cut(s)	18
Aor51HI	AGCGCT	1 cut(s)	385
AoxI	GGCC	1 cut(s)	433
ApeKI	GCWGC	3 cut(s)	132, 458, 484
ApoI	RAATTY	1 cut(s)	308
AspLEI	GCGC	1 cut(s)	386
AsuHPI	GGTGA	2 cut(s)	40, 285
AxyI	CCTNAGG	1 cut(s)	509
BanII	GRGCYC	1 cut(s)	213
BauI	CACGAG	1 cut(s)	317
BbsI	GAAGAC	1 cut(s)	126
Bbv12I	GWGCWC	1 cut(s)	213
BbvI	GCAGC	3 cut(s)	144, 470, 471
BccI	CCATC	3 cut(s)	122, 297, 612
BcoDI	GTCTC	1 cut(s)	195
BcuI	ACTAGT	1 cut(s)	422
BfaI	CTAG	3 cut(s)	101, 423, 560
BfoI	RGCGCY	1 cut(s)	387
BisI	GCNGC	3 cut(s)	133, 459, 485
BlsI	GCNGC	3 cut(s)	134, 460, 486
BmsI	GCATC	3 cut(s)	326, 352, 525
BpiI	GAAGAC	1 cut(s)	126
BpmI	CTGGAG	2 cut(s)	232, 374
Bsa29I	ATCGAT	1 cut(s)	613
BsaI	GGTCTC	1 cut(s)	195
BsaJI	CCNNGG	1 cut(s)	34
BsaWI	WCCGGW	1 cut(s)	391
Bse118I	RCCGGY	1 cut(s)	339
Bse1I	ACTGG	2 cut(s)	357, 436
Bse21I	CCTNAGG	1 cut(s)	509
Bse3DI	GCAATG	1 cut(s)	460
BseCI	ATCGAT	1 cut(s)	613
BseDI	CCNNGG	1 cut(s)	34
BseGI	GGATG	1 cut(s)	341
BseMI	GCAATG	1 cut(s)	460
BseMII	CTCAG	3 cut(s)	189, 219, 560
BseNI	ACTGG	2 cut(s)	357, 436
BseRI	GAGGAG	1 cut(s)	509
BseXI	GCAGC	3 cut(s)	144, 470, 471
BshFI	GGCC	1 cut(s)	435
BshVI	ATCGAT	1 cut(s)	613
BsiHKAI	GWGCWC	1 cut(s)	213
BsiSI	CCGG	2 cut(s)	340, 392
BsiWI	CGTACG	1 cut(s)	90
BsmAI	GTCTC	1 cut(s)	195
BsnI	GGCC	1 cut(s)	435
Bso31I	GGTCTC	1 cut(s)	195
Bsp1286I	GDGCHC	1 cut(s)	213
Bsp143I	GATC	3 cut(s)	10, 143, 357
Bsp19I	CCATGG	1 cut(s)	34
BspACI	CCGC	1 cut(s)	135
BspANI	GGCC	1 cut(s)	435
BspCNI	CTCAG	3 cut(s)	190, 218, 559
BspDI	ATCGAT	1 cut(s)	613
BspPI	GGATC	1 cut(s)	18
BspTNI	GGTCTC	1 cut(s)	195
BsrDI	GCAATG	1 cut(s)	460
BsrFI	RCCGGY	1 cut(s)	339
BsrI	ACTGG	2 cut(s)	357, 436
BssAI	RCCGGY	1 cut(s)	339
BssECI	CCNNGG	1 cut(s)	34
BssMI	GATC	3 cut(s)	10, 143, 357
BssSI	CACGAG	1 cut(s)	317
BssT1I	CCWWGG	1 cut(s)	34
Bst2BI	CACGAG	1 cut(s)	317
Bst6I	CTCTTC	1 cut(s)	108
BstC8I	GCNNGC	2 cut(s)	263, 341
BstDEI	CTNAG	4 cut(s)	198, 205, 509, 546
BstDSI	CCRYGG	1 cut(s)	34
BstF5I	GGATG	1 cut(s)	341
BstH2I	RGCGCY	1 cut(s)	387
BstHHI	GCGC	1 cut(s)	386
BstKTI	GATC	3 cut(s)	13, 146, 360
BstMAI	GTCTC	1 cut(s)	195
BstMBI	GATC	3 cut(s)	10, 143, 357
BstMWI	GCNNNNNNNGC	4 cut(s)	217, 258, 381, 535
BstV1I	GCAGC	3 cut(s)	144, 470, 471
BstV2I	GAAGAC	1 cut(s)	126
BstXI	CCANNNNNNTGG	1 cut(s)	303
Bsu15I	ATCGAT	1 cut(s)	613
Bsu36I	CCTNAGG	1 cut(s)	509
BsuRI	GGCC	1 cut(s)	435
BsuTUI	ATCGAT	1 cut(s)	613
BtgI	CCRYGG	1 cut(s)	34
BtsCI	GGATG	1 cut(s)	341
Cac8I	GCNNGC	2 cut(s)	263, 341
CfoI	GCGC	1 cut(s)	386
Cfr10I	RCCGGY	1 cut(s)	339
ClaI	ATCGAT	1 cut(s)	613
Csp6I	GTAC	1 cut(s)	91
CviAII	CATG	3 cut(s)	35, 156, 448
CviJI	RGCY	8 cut(s)	66, 211, 252, 265, 407, 435, 529, 571
CviKI_1	RGCY	8 cut(s)	66, 211, 252, 265, 407, 435, 529, 571
CviQI	GTAC	1 cut(s)	91
DdeI	CTNAG	4 cut(s)	198, 205, 509, 546
DpnI	GATC	3 cut(s)	12, 145, 359
DpnII	GATC	3 cut(s)	10, 143, 357
Eam1104I	CTCTTC	1 cut(s)	108
EarI	CTCTTC	1 cut(s)	108
Ecl136II	GAGCTC	1 cut(s)	211
Eco130I	CCWWGG	1 cut(s)	34
Eco24I	GRGCYC	1 cut(s)	213
Eco31I	GGTCTC	1 cut(s)	195
Eco47III	AGCGCT	1 cut(s)	385
Eco53kI	GAGCTC	1 cut(s)	211
Eco57I	CTGAAG	1 cut(s)	515
Eco81I	CCTNAGG	1 cut(s)	509
EcoICRI	GAGCTC	1 cut(s)	211
EcoRI	GAATTC	1 cut(s)	308
EcoT14I	CCWWGG	1 cut(s)	34
EcoT38I	GRGCYC	1 cut(s)	213
ErhI	CCWWGG	1 cut(s)	34
FaeI	CATG	3 cut(s)	38, 159, 451
FatI	CATG	3 cut(s)	34, 155, 447
Fnu4HI	GCNGC	3 cut(s)	133, 459, 485
FokI	GGATG	1 cut(s)	348
FriOI	GRGCYC	1 cut(s)	213
Fsp4HI	GCNGC	3 cut(s)	133, 459, 485
FspBI	CTAG	3 cut(s)	101, 423, 560
GlaI	GCGC	1 cut(s)	385
GluI	GCNGC	3 cut(s)	133, 459, 485
GsuI	CTGGAG	2 cut(s)	232, 374
HaeII	RGCGCY	1 cut(s)	387
HaeIII	GGCC	1 cut(s)	435
HapII	CCGG	2 cut(s)	340, 392
HhaI	GCGC	1 cut(s)	386
Hin1II	CATG	3 cut(s)	38, 159, 451
Hin6I	GCGC	1 cut(s)	384
HinP1I	GCGC	1 cut(s)	384
HinfI	GANTC	2 cut(s)	279, 472
HpaII	CCGG	2 cut(s)	340, 392
HphI	GGTGA	2 cut(s)	40, 285
Hpy166II	GTNNAC	1 cut(s)	31
Hpy188I	TCNGA	6 cut(s)	25, 48, 208, 366, 412, 534
Hpy188III	TCNNGA	2 cut(s)	283, 328
Hpy8I	GTNNAC	1 cut(s)	31
HpyAV	CCTTC	1 cut(s)	325
HpyCH4IV	ACGT	1 cut(s)	89
HpyCH4V	TGCA	3 cut(s)	458, 538, 598
HpyF10VI	GCNNNNNNNGC	4 cut(s)	217, 258, 381, 535
HpyF3I	CTNAG	4 cut(s)	198, 205, 509, 546
HpySE526I	ACGT	1 cut(s)	89
Hsp92II	CATG	3 cut(s)	38, 159, 451
HspAI	GCGC	1 cut(s)	384
KroI	GCCGGC	1 cut(s)	339
KroNI	GCCGGC	1 cut(s)	341
Kzo9I	GATC	3 cut(s)	10, 143, 357
LmnI	GCTCC	1 cut(s)	526
LpnPI	CCDG	9 cut(s)	81, 207, 262, 275, 338, 341, 353, 405, 417
Lsp1109I	GCAGC	3 cut(s)	144, 470, 471
LweI	GCATC	3 cut(s)	326, 352, 525
MaeI	CTAG	3 cut(s)	101, 423, 560
MaeII	ACGT	1 cut(s)	89
MalI	GATC	3 cut(s)	12, 145, 359
MboI	GATC	3 cut(s)	10, 143, 357
MboII	GAAGA	7 cut(s)	119, 122, 125, 131, 137, 379, 425
MfeI	CAATTG	1 cut(s)	147
MhlI	GDGCHC	1 cut(s)	213
MluCI	AATT	2 cut(s)	147, 308
MmeI	TCCRAC	1 cut(s)	555
MnlI	CCTC	6 cut(s)	19, 48, 97, 109, 160, 487
MroNI	GCCGGC	1 cut(s)	339
MseI	TTAA	2 cut(s)	267, 438
MspA1I	CMGCKG	1 cut(s)	135
MspI	CCGG	2 cut(s)	340, 392
MunI	CAATTG	1 cut(s)	147
MwoI	GCNNNNNNNGC	4 cut(s)	217, 258, 381, 535
NaeI	GCCGGC	1 cut(s)	341
NcoI	CCATGG	1 cut(s)	34
NdeII	GATC	3 cut(s)	10, 143, 357
NgoMIV	GCCGGC	1 cut(s)	339
NlaIII	CATG	3 cut(s)	38, 159, 451
PdiI	GCCGGC	1 cut(s)	341
PfeI	GAWTC	2 cut(s)	279, 472
Pfl23II	CGTACG	1 cut(s)	90
PkrI	GCNGC	3 cut(s)	134, 460, 486
Psp124BI	GAGCTC	1 cut(s)	213
PspLI	CGTACG	1 cut(s)	90
RsaI	GTAC	1 cut(s)	92
RsaNI	GTAC	1 cut(s)	91
SacI	GAGCTC	1 cut(s)	213
SaqAI	TTAA	2 cut(s)	267, 438
SatI	GCNGC	3 cut(s)	133, 459, 485
Sau3AI	GATC	3 cut(s)	10, 143, 357
SduI	GDGCHC	1 cut(s)	213
SetI	ASST	9 cut(s)	30, 92, 213, 254, 267, 275, 510, 531, 573
SfaNI	GCATC	3 cut(s)	326, 352, 525
SpeI	ACTAGT	1 cut(s)	422
Sse9I	AATT	2 cut(s)	147, 308
SsiI	CCGC	1 cut(s)	135
SspMI	CTAG	3 cut(s)	101, 423, 560
SstI	GAGCTC	1 cut(s)	213
StyI	CCWWGG	1 cut(s)	34
TaiI	ACGT	1 cut(s)	92
TaqI	TCGA	4 cut(s)	53, 83, 442, 613
TasI	AATT	2 cut(s)	147, 308
TfiI	GAWTC	2 cut(s)	279, 472
Tru1I	TTAA	2 cut(s)	267, 438
Tru9I	TTAA	2 cut(s)	267, 438
TseI	GCWGC	3 cut(s)	132, 458, 484
XapI	RAATTY	1 cut(s)	308
XspI	CTAG	3 cut(s)	101, 423, 560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.