FvH4_3g09400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0016784
Physical Location & Seq
Forward (+)
5477983 .. 5480146
2164 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g09400.t2

Sequence Viewer

Length: 975 bp
ATGATGACAAGACCAAAATGGGCGTGCATGGCTCTTTTGCTATTTCTTAGCTTGGGAGTTAGCTCTGCTGGTAGAGTCACAGTGGTGGATAATGATAAGCCCGAAAAGTTTGTCTTGGGTGGTCATATTGGTTGGAACCCGGGCTACATCGGAGGTATTATTGAAGGGGCTCTTGGCCACAAGAGGCCCCAGACTCCCCCCACGCCACCACCCAGCCCAGATGAGACCTCTATTGCTGGAGCCACAGAAGAAGGTTATGTTGGAGGCCAAGGCGGTGGATATGGTAGCGGCCAAGTAGGCGGTATTAGTGGGGGAGGAGGAGGCGGCAGAGGCGGCAGCTTTGGTAAAGGTGGAGGAGGTGGATGGGGTGGTGGAGGTGGAGGTGGAGGTGGTGGCCGAGACCGTCACCGAGGCGGTGATGATTACAGTGACCAAAGTGGCGTTGGCGGCAATTGGCGAGACTGCCACCGAGTTGGTGATGATTGCGGTGACCAAAGCGGCTGCGATAGTGGGGACCAAAGCAGTGGCAGTGATTGTGGGGACCAAAGTGGCGGTGATAACCGGGGCCAAGGCGGCAGCCCAAGCACTGTTGTCCCAGGTTTCACCATTCCTGGCTTTGAAATTGGTGGTGTGATCGGCGGTGAAATTGGTATCGGAACTTCTGGCGGTTTATACTGCAAACCAATTAAATGCCATGGTAATAACTGCAGAGGAGTTCGTTTGTACTTTGAAAACTCAAATGATCCCAAAATGGCGGGAAGCAATGGTCAAAAACAAAATATGAACCATGAAGAGGAGGATAAACACAGCATGAATACCCTGGCTGCTTCAGAACCAATGGATACCCGTGATACTACTGGGATCAGACCTCCGGCAGATACGGACCCTCCATCACCACCACTCAATGTTGCTGCAGAACCAGAACCAGTTGATCCCCTAAAACAAGAAAGCGTGGTCCCAAAACCGTCACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

325

Amino Acids

32.63

Weight (kDa)

5.0

Isoelectric Point (pI)

55.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016784)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g09400 FvH4_3g09400
prunus_persica Prupe.4G045400_v2.0.a1
pyrus_communis pycom05g29190
rosa_laevigata RLG00000031547
rosa_multiflora Rmu_co8070730.1_g000001 Rmu_sc0001626.1_g000021 Rmu_sc0024443.1_g000001
rosa_roxburghii Rroxscaffold_1G00068280
rosa_rugosa Rorug04G0434300
rosa_samantha Rh5AG062200 Rh5BG058900 Rh5CG069400 Rh5DG058300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 737, 869, 926
AcoI YGGCCR 3 cut(s) 175, 289, 394
AcuI CTGAAG 1 cut(s) 813
AfaI GTAC 1 cut(s) 725
AfiI CCNNNNNNNGG 1 cut(s) 793
AgsI TTSAA 3 cut(s) 164, 620, 731
AjnI CCWGG 3 cut(s) 595, 610, 819
AjuI GAANNNNNNNTTGG 4 cut(s) 156, 188, 243, 275
AleI CACNNNNGTG 1 cut(s) 83
AluBI AGCT 3 cut(s) 51, 63, 339
AluI AGCT 3 cut(s) 51, 63, 339
Alw26I GTCTC 3 cut(s) 218, 393, 453
AlwI GGATC 3 cut(s) 737, 869, 926
Ama87I CYCGRG 1 cut(s) 139
AoxI GGCC 6 cut(s) 175, 185, 265, 289, 394, 565
ApeKI GCWGC 5 cut(s) 336, 501, 576, 824, 911
ArsI GACNNNNNNTTYG 2 cut(s) 96, 128
AspS9I GGNCC 6 cut(s) 186, 514, 541, 565, 883, 955
AsuC2I CCSGG 3 cut(s) 140, 141, 563
AsuHPI GGTGA 9 cut(s) 398, 428, 488, 500, 566, 595, 653, 885, 960
AvaI CYCGRG 1 cut(s) 139
AvaII GGWCC 4 cut(s) 514, 541, 883, 955
BalI TGGCCA 1 cut(s) 177
BanII GRGCYC 1 cut(s) 172
BarI GAAGNNNNNNTAC 2 cut(s) 643, 675
BbvI GCAGC 5 cut(s) 348, 488, 588, 811, 898
BccI CCATC 2 cut(s) 357, 898
BciT130I CCWGG 3 cut(s) 597, 612, 821
BciVI GTATCC 1 cut(s) 835
BcnI CCSGG 3 cut(s) 140, 141, 563
BcoDI GTCTC 3 cut(s) 218, 393, 453
BfmI CTRYAG 2 cut(s) 706, 912
BfuI GTATCC 1 cut(s) 835
BglI GCCNNNNNGGC 2 cut(s) 297, 573
Bme1390I CCNGG 6 cut(s) 140, 141, 563, 597, 612, 821
Bme18I GGWCC 4 cut(s) 514, 541, 883, 955
BmeT110I CYCGRG 1 cut(s) 139
BmgT120I GGNCC 6 cut(s) 186, 514, 541, 565, 883, 955
BmiI GGNNCC 8 cut(s) 137, 188, 241, 515, 542, 566, 885, 957
BmrFI CCNGG 6 cut(s) 140, 141, 563, 597, 612, 821
BmrI ACTGGG 1 cut(s) 867
BmuI ACTGGG 1 cut(s) 867
BpmI CTGGAG 1 cut(s) 258
BpuMI CCSGG 3 cut(s) 140, 141, 563
BsaI GGTCTC 2 cut(s) 218, 393
BsaJI CCNNGG 8 cut(s) 139, 268, 409, 562, 568, 595, 694, 819
BsaXI ACNNNNNCTCC 2 cut(s) 871, 901
Bsc4I CCNNNNNNNGG 1 cut(s) 793
Bse1I ACTGG 2 cut(s) 862, 926
Bse3DI GCAATG 1 cut(s) 769
BseBI CCWGG 3 cut(s) 597, 612, 821
BseDI CCNNGG 8 cut(s) 139, 268, 409, 562, 568, 595, 694, 819
BseGI GGATG 1 cut(s) 368
BseLI CCNNNNNNNGG 1 cut(s) 793
BseMI GCAATG 1 cut(s) 769
BseNI ACTGG 2 cut(s) 862, 926
BseRI GAGGAG 5 cut(s) 330, 333, 369, 726, 809
BseXI GCAGC 5 cut(s) 348, 488, 588, 811, 898
BseYI CCCAGC 1 cut(s) 212
BshFI GGCC 6 cut(s) 177, 187, 267, 291, 396, 567
BsiHKCI CYCGRG 1 cut(s) 139
BsiSI CCGG 3 cut(s) 140, 562, 872
BslFI GGGAC 4 cut(s) 527, 554, 578, 941
BslI CCNNNNNNNGG 1 cut(s) 793
BsmAI GTCTC 3 cut(s) 218, 393, 453
BsmFI GGGAC 4 cut(s) 527, 554, 578, 941
BsnI GGCC 6 cut(s) 177, 187, 267, 291, 396, 567
Bso31I GGTCTC 2 cut(s) 218, 393
BsoBI CYCGRG 1 cut(s) 139
Bsp1286I GDGCHC 1 cut(s) 172
Bsp143I GATC 4 cut(s) 633, 742, 861, 931
Bsp19I CCATGG 1 cut(s) 694
BspANI GGCC 6 cut(s) 177, 187, 267, 291, 396, 567
BspLI GGNNCC 8 cut(s) 137, 188, 241, 515, 542, 566, 885, 957
BspMAI CTGCAG 2 cut(s) 710, 916
BspPI GGATC 3 cut(s) 737, 869, 926
BspTNI GGTCTC 2 cut(s) 218, 393
BsrDI GCAATG 1 cut(s) 769
BsrI ACTGG 2 cut(s) 862, 926
BssECI CCNNGG 8 cut(s) 139, 268, 409, 562, 568, 595, 694, 819
BssMI GATC 4 cut(s) 633, 742, 861, 931
BssT1I CCWWGG 3 cut(s) 268, 568, 694
Bst2UI CCWGG 3 cut(s) 597, 612, 821
Bst4CI ACNGT 5 cut(s) 82, 404, 428, 589, 966
Bst6I CTCTTC 1 cut(s) 786
BstC8I GCNNGC 1 cut(s) 25
BstDEI CTNAG 1 cut(s) 47
BstDSI CCRYGG 1 cut(s) 694
BstEII GGTNACC 1 cut(s) 488
BstF5I GGATG 1 cut(s) 368
BstKTI GATC 4 cut(s) 636, 745, 864, 934
BstMAI GTCTC 3 cut(s) 218, 393, 453
BstMBI GATC 4 cut(s) 633, 742, 861, 931
BstMWI GCNNNNNNNGC 7 cut(s) 29, 297, 330, 333, 447, 573, 582
BstNI CCWGG 3 cut(s) 597, 612, 821
BstPI GGTNACC 1 cut(s) 488
BstSCI CCNGG 6 cut(s) 138, 139, 561, 595, 610, 819
BstSFI CTRYAG 2 cut(s) 706, 912
BstV1I GCAGC 5 cut(s) 348, 488, 588, 811, 898
BstXI CCANNNNNNTGG 3 cut(s) 275, 473, 524
BsuI GTATCC 1 cut(s) 835
BsuRI GGCC 6 cut(s) 177, 187, 267, 291, 396, 567
BtgI CCRYGG 1 cut(s) 694
BtsCI GGATG 1 cut(s) 368
BtsI GCAGTG 2 cut(s) 529, 535
BtsIMutI CAGTG 5 cut(s) 87, 433, 529, 535, 585
Cac8I GCNNGC 1 cut(s) 25
Cfr13I GGNCC 6 cut(s) 186, 514, 541, 565, 883, 955
Cfr9I CCCGGG 1 cut(s) 139
Csp6I GTAC 1 cut(s) 724
CviAII CATG 5 cut(s) 28, 695, 788, 811, 972
CviQI GTAC 1 cut(s) 724
DdeI CTNAG 1 cut(s) 47
DpnI GATC 4 cut(s) 635, 744, 863, 933
DpnII GATC 4 cut(s) 633, 742, 861, 931
EaeI YGGCCR 3 cut(s) 175, 289, 394
Eam1104I CTCTTC 1 cut(s) 786
EarI CTCTTC 1 cut(s) 786
Eco130I CCWWGG 3 cut(s) 268, 568, 694
Eco24I GRGCYC 1 cut(s) 172
Eco31I GGTCTC 2 cut(s) 218, 393
Eco47I GGWCC 4 cut(s) 514, 541, 883, 955
Eco57I CTGAAG 1 cut(s) 813
Eco88I CYCGRG 1 cut(s) 139
Eco91I GGTNACC 1 cut(s) 488
EcoO109I RGGNCCY 1 cut(s) 186
EcoO65I GGTNACC 1 cut(s) 488
EcoRII CCWGG 3 cut(s) 595, 610, 819
EcoT14I CCWWGG 3 cut(s) 268, 568, 694
EcoT38I GRGCYC 1 cut(s) 172
ErhI CCWWGG 3 cut(s) 268, 568, 694
FaeI CATG 5 cut(s) 31, 698, 791, 814, 975
FalI AAGNNNNNCTT 4 cut(s) 98, 130, 156, 188
FaqI GGGAC 4 cut(s) 527, 554, 578, 941
FatI CATG 5 cut(s) 27, 694, 787, 810, 971
FauI CCCGC 1 cut(s) 748
FokI GGATG 1 cut(s) 375
FriOI GRGCYC 1 cut(s) 172
GsaI CCCAGC 1 cut(s) 216
GsuI CTGGAG 1 cut(s) 258
HaeIII GGCC 6 cut(s) 177, 187, 267, 291, 396, 567
HapII CCGG 3 cut(s) 140, 562, 872
Hin1II CATG 5 cut(s) 31, 698, 791, 814, 975
HinfI GANTC 2 cut(s) 75, 193
HpaII CCGG 3 cut(s) 140, 562, 872
HphI GGTGA 9 cut(s) 398, 428, 488, 500, 566, 595, 653, 885, 960
Hpy188I TCNGA 4 cut(s) 152, 656, 832, 866
HpyAV CCTTC 2 cut(s) 158, 245
HpyCH4III ACNGT 5 cut(s) 82, 404, 428, 589, 966
HpyCH4V TGCA 4 cut(s) 27, 678, 708, 914
HpyF10VI GCNNNNNNNGC 7 cut(s) 29, 297, 330, 333, 447, 573, 582
HpyF3I CTNAG 1 cut(s) 47
Hsp92II CATG 5 cut(s) 31, 698, 791, 814, 975
Kzo9I GATC 4 cut(s) 633, 742, 861, 931
LmnI GCTCC 1 cut(s) 239
Lsp1109I GCAGC 5 cut(s) 348, 488, 588, 811, 898
MaeIII GTNAC 5 cut(s) 76, 404, 428, 488, 966
MalI GATC 4 cut(s) 635, 744, 863, 933
MboI GATC 4 cut(s) 633, 742, 861, 931
MboII GAAGA 2 cut(s) 260, 803
MfeI CAATTG 1 cut(s) 451
MhlI GDGCHC 1 cut(s) 172
MlsI TGGCCA 1 cut(s) 177
MluCI AATT 4 cut(s) 451, 621, 645, 684
MluNI TGGCCA 1 cut(s) 177
MlyI GAGTC 2 cut(s) 84, 187
MmeI TCCRAC 2 cut(s) 113, 241
Mox20I TGGCCA 1 cut(s) 177
MscI TGGCCA 1 cut(s) 177
MseI TTAA 1 cut(s) 687
MslI CAYNNNNRTG 1 cut(s) 83
Msp20I TGGCCA 1 cut(s) 177
MspI CCGG 3 cut(s) 140, 562, 872
MspR9I CCNGG 6 cut(s) 140, 141, 563, 597, 612, 821
MunI CAATTG 1 cut(s) 451
MvaI CCWGG 3 cut(s) 597, 612, 821
MwoI GCNNNNNNNGC 7 cut(s) 29, 297, 330, 333, 447, 573, 582
NciI CCSGG 3 cut(s) 140, 141, 563
NcoI CCATGG 1 cut(s) 694
NdeII GATC 4 cut(s) 633, 742, 861, 931
NlaIII CATG 5 cut(s) 31, 698, 791, 814, 975
NlaIV GGNNCC 8 cut(s) 137, 188, 241, 515, 542, 566, 885, 957
NmeAIII GCCGAG 1 cut(s) 422
NmuCI GTSAC 5 cut(s) 76, 404, 428, 488, 966
OliI CACNNNNGTG 1 cut(s) 83
PleI GAGTC 2 cut(s) 83, 187
PpsI GAGTC 2 cut(s) 83, 187
Psp6I CCWGG 3 cut(s) 595, 610, 819
PspEI GGTNACC 1 cut(s) 488
PspFI CCCAGC 1 cut(s) 212
PspGI CCWGG 3 cut(s) 595, 610, 819
PspN4I GGNNCC 8 cut(s) 137, 188, 241, 515, 542, 566, 885, 957
PspPI GGNCC 6 cut(s) 186, 514, 541, 565, 883, 955
PsrI GAACNNNNNNTAC 2 cut(s) 128, 160
PstI CTGCAG 2 cut(s) 710, 916
RsaI GTAC 1 cut(s) 725
RsaNI GTAC 1 cut(s) 724
RseI CAYNNNNRTG 1 cut(s) 83
SaqAI TTAA 1 cut(s) 687
Sau3AI GATC 4 cut(s) 633, 742, 861, 931
Sau96I GGNCC 6 cut(s) 186, 514, 541, 565, 883, 955
SchI GAGTC 2 cut(s) 84, 187
ScrFI CCNGG 6 cut(s) 140, 141, 563, 597, 612, 821
SduI GDGCHC 1 cut(s) 172
SfcI CTRYAG 2 cut(s) 706, 912
SinI GGWCC 4 cut(s) 514, 541, 883, 955
SmaI CCCGGG 1 cut(s) 141
SmiMI CAYNNNNRTG 1 cut(s) 83
Sse9I AATT 4 cut(s) 451, 621, 645, 684
StyD4I CCNGG 6 cut(s) 138, 139, 561, 595, 610, 819
StyI CCWWGG 3 cut(s) 268, 568, 694
TaaI ACNGT 5 cut(s) 82, 404, 428, 589, 966
TasI AATT 4 cut(s) 451, 621, 645, 684
TatI WGTACW 1 cut(s) 723
TauI GCSGC 6 cut(s) 291, 327, 336, 450, 501, 576
Tru1I TTAA 1 cut(s) 687
Tru9I TTAA 1 cut(s) 687
TscAI CASTG 5 cut(s) 87, 433, 529, 535, 592
TseFI GTSAC 5 cut(s) 76, 404, 428, 488, 966
TseI GCWGC 5 cut(s) 336, 501, 576, 824, 911
Tsp45I GTSAC 5 cut(s) 76, 404, 428, 488, 966
TspDTI ATGAA 3 cut(s) 797, 804, 827
TspGWI ACGGA 1 cut(s) 896
TspMI CCCGGG 1 cut(s) 139
TspRI CASTG 5 cut(s) 87, 433, 529, 535, 592
VpaK11BI GGWCC 4 cut(s) 514, 541, 883, 955
XcmI CCANNNNNNNNNTGG 1 cut(s) 440
XmaI CCCGGG 1 cut(s) 139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.