Rmu_sc0001626.1_g000021

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001626.1
OG0016784
Physical Location & Seq
Reverse (-)
113314 .. 114393
1080 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001626.1_g000021.1.cds

Sequence Viewer

Length: 1080 bp
atggcaacaccaaaatgggcatgcatggctcttttgctatttctcagcttgggagttggctctgctggtagagccaaagtggttgataaaccagaaaagtttgtcttgggtggacatattggtttgaaaccaggcttccacattggaggtattattgaaggggcacttggccacaatgacaagagtccccagagtccccccactccaccacccagcccaagtgacacctctgttgccggagccagaggtgatggttatggtggaggccgaggcggcggctatggaagcggccaagtaggcggcattattgggggaggaggaggaggtggaggcggtagtgttggtggtgggtttggcgggggtggaagcggaggaggcggctttggtagaggtggaggtggcggatggagtggtggaggaggtggcggtggcggccgagaaggtggtgatgattgccgggaccaaagcggcggtgatgacggagaccaaggcggcagcccaagcattgtcgtcccaggttttaccattcctggctttgacattggcggtgttatcggcggtggaattagtactggatcttctggtctatactgcacaccaattaattgccgtggtaatgactgcaagggagttcatttgtacttcgataactctaatgctcccaatatggcccccattttggcgccagagaccctggcgggaagcaacggtcaaaaacaaaatgtgaaccatgaagtggaggataaacacagtatggataccctggcttcagaaccaagcgctagcctcgacacgaaaccaaggtcaccagacccaaaggatgacagtgcaaccccaatttatgtccctgtaccagtcccagacccaaacaatgctccgtcatcacgaggaagaccttggccaccaatagatcctccgacaccaccaagcaacaccctgggatcaagcaatgccctggcaccagaaccaagcgatgccctggaactggaaccaagctatgattccgtggtcccaaaaccaagtgaggacctggaagtagaactaagcgtggtcccaaaaccggcaccgggattagactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

359

Amino Acids

35.17

Weight (kDa)

4.72

Isoelectric Point (pI)

59.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016784)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g09400 FvH4_3g09400
prunus_persica Prupe.4G045400_v2.0.a1
pyrus_communis pycom05g29190
rosa_laevigata RLG00000031547
rosa_multiflora Rmu_co8070730.1_g000001 Rmu_sc0001626.1_g000021 Rmu_sc0024443.1_g000001
rosa_roxburghii Rroxscaffold_1G00068280
rosa_rugosa Rorug04G0434300
rosa_samantha Rh5AG062200 Rh5BG058900 Rh5CG069400 Rh5DG058300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 682, 958, 1063
AccB7I CCANNNNNTGG 1 cut(s) 736
AclWI GGATC 3 cut(s) 583, 905, 949
AcoI YGGCCR 4 cut(s) 169, 289, 433, 899
AcuI CTGAAG 1 cut(s) 753
AcyI GRCGYC 1 cut(s) 683
AfaI GTAC 3 cut(s) 571, 641, 852
AfeI AGCGCT 1 cut(s) 781
AfiI CCNNNNNNNGG 5 cut(s) 679, 736, 985, 1060, 1067
AgsI TTSAA 2 cut(s) 127, 158
AjnI CCWGG 9 cut(s) 130, 514, 529, 693, 762, 936, 954, 978, 1029
AjuI GAANNNNNNNTTGG 4 cut(s) 150, 182, 985, 1017
AluBI AGCT 2 cut(s) 48, 996
AluI AGCT 2 cut(s) 48, 996
Alw26I GTCTC 2 cut(s) 477, 683
AlwI GGATC 3 cut(s) 583, 905, 949
Aor51HI AGCGCT 1 cut(s) 781
AoxI GGCC 6 cut(s) 169, 265, 289, 433, 669, 899
ApeKI GCWGC 1 cut(s) 495
ArsI GACNNNNNNTTYG 2 cut(s) 788, 820
AseI ATTAAT 1 cut(s) 603
AspLEI GCGC 2 cut(s) 685, 782
AspS9I GGNCC 5 cut(s) 460, 670, 1009, 1027, 1051
AsuC2I CCSGG 2 cut(s) 458, 1068
AsuHPI GGTGA 4 cut(s) 260, 458, 485, 798
AsuNHI GCTAGC 1 cut(s) 782
AvaII GGWCC 4 cut(s) 460, 1009, 1027, 1051
BaeGI GKGCMC 1 cut(s) 166
BalI TGGCCA 2 cut(s) 171, 901
BanI GGYRCC 3 cut(s) 682, 958, 1063
BarI GAAGNNNNNNTAC 2 cut(s) 562, 594
BauI CACGAG 1 cut(s) 885
BbsI GAAGAC 1 cut(s) 898
BbvI GCAGC 1 cut(s) 507
BccI CCATC 2 cut(s) 245, 399
BceAI ACGGC 1 cut(s) 594
BciT130I CCWGG 9 cut(s) 132, 516, 531, 695, 764, 938, 956, 980, 1031
BciVI GTATCC 1 cut(s) 751
BcnI CCSGG 2 cut(s) 458, 1068
BcoDI GTCTC 2 cut(s) 477, 683
BfaI CTAG 2 cut(s) 783, 1078
BfoI RGCGCY 2 cut(s) 686, 783
BfuI GTATCC 1 cut(s) 751
BglI GCCNNNNNGGC 2 cut(s) 273, 297
BisI GCNGC 9 cut(s) 274, 277, 289, 301, 379, 433, 469, 493, 496
BlsI GCNGC 9 cut(s) 275, 278, 290, 302, 380, 434, 470, 494, 497
BmcAI AGTACT 1 cut(s) 571
Bme18I GGWCC 4 cut(s) 460, 1009, 1027, 1051
BmgT120I GGNCC 5 cut(s) 460, 670, 1009, 1027, 1051
BmiI GGNNCC 9 cut(s) 241, 461, 672, 684, 960, 990, 1011, 1053, 1065
BmsI GCATC 1 cut(s) 964
BmtI GCTAGC 1 cut(s) 786
BoxI GACNNNNGTC 1 cut(s) 183
BpiI GAAGAC 1 cut(s) 898
BpuMI CCSGG 2 cut(s) 458, 1068
BsaHI GRCGYC 1 cut(s) 683
BsaI GGTCTC 2 cut(s) 477, 683
Bsc4I CCNNNNNNNGG 5 cut(s) 679, 736, 985, 1060, 1067
Bse118I RCCGGY 1 cut(s) 1060
Bse1I ACTGG 3 cut(s) 577, 854, 990
Bse3DI GCAATG 1 cut(s) 955
BseBI CCWGG 9 cut(s) 132, 516, 531, 695, 764, 938, 956, 980, 1031
BseGI GGATG 2 cut(s) 410, 826
BseLI CCNNNNNNNGG 5 cut(s) 679, 736, 985, 1060, 1067
BseMI GCAATG 1 cut(s) 955
BseMII CTCAG 1 cut(s) 58
BseNI ACTGG 3 cut(s) 577, 854, 990
BseRI GAGGAG 5 cut(s) 330, 333, 336, 387, 432
BseSI GKGCMC 1 cut(s) 166
BseX3I CGGCCG 1 cut(s) 433
BseXI GCAGC 1 cut(s) 507
BseYI CCCAGC 1 cut(s) 212
BsgI GTGCAG 1 cut(s) 577
Bsh1285I CGRYCG 1 cut(s) 436
BshFI GGCC 6 cut(s) 171, 267, 291, 435, 671, 901
BshNI GGYRCC 3 cut(s) 682, 958, 1063
BsiEI CGRYCG 1 cut(s) 436
BsiSI CCGG 4 cut(s) 237, 457, 1061, 1067
BslFI GGGAC 8 cut(s) 171, 180, 473, 497, 830, 842, 995, 1037
BslI CCNNNNNNNGG 5 cut(s) 679, 736, 985, 1060, 1067
BsmAI GTCTC 2 cut(s) 477, 683
BsmFI GGGAC 8 cut(s) 171, 180, 473, 497, 830, 842, 995, 1037
BsnI GGCC 6 cut(s) 171, 267, 291, 435, 671, 901
Bso31I GGTCTC 2 cut(s) 477, 683
Bsp1286I GDGCHC 1 cut(s) 166
Bsp143I GATC 3 cut(s) 575, 910, 941
BspANI GGCC 6 cut(s) 171, 267, 291, 435, 671, 901
BspCNI CTCAG 1 cut(s) 57
BspLI GGNNCC 9 cut(s) 241, 461, 672, 684, 960, 990, 1011, 1053, 1065
BspOI GCTAGC 1 cut(s) 786
BspPI GGATC 3 cut(s) 583, 905, 949
BspT107I GGYRCC 3 cut(s) 682, 958, 1063
BspTNI GGTCTC 2 cut(s) 477, 683
BsrDI GCAATG 1 cut(s) 955
BsrFI RCCGGY 1 cut(s) 1060
BsrI ACTGG 3 cut(s) 577, 854, 990
BssAI RCCGGY 1 cut(s) 1060
BssMI GATC 3 cut(s) 575, 910, 941
BssNI GRCGYC 1 cut(s) 683
BssSI CACGAG 1 cut(s) 885
BssT1I CCWWGG 3 cut(s) 487, 800, 896
Bst2BI CACGAG 1 cut(s) 885
Bst2UI CCWGG 9 cut(s) 132, 516, 531, 695, 764, 938, 956, 980, 1031
Bst4CI ACNGT 3 cut(s) 710, 752, 827
BstACI GRCGYC 1 cut(s) 683
BstC8I GCNNGC 2 cut(s) 22, 784
BstDEI CTNAG 2 cut(s) 44, 1043
BstDSI CCRYGG 2 cut(s) 610, 1005
BstEII GGTNACC 1 cut(s) 804
BstF5I GGATG 2 cut(s) 410, 826
BstH2I RGCGCY 2 cut(s) 686, 783
BstHHI GCGC 2 cut(s) 685, 782
BstKTI GATC 3 cut(s) 578, 913, 944
BstMAI GTCTC 2 cut(s) 477, 683
BstMBI GATC 3 cut(s) 575, 910, 941
BstMCI CGRYCG 1 cut(s) 436
BstMWI GCNNNNNNNGC 8 cut(s) 26, 71, 273, 285, 297, 375, 432, 501
BstNI CCWGG 9 cut(s) 132, 516, 531, 695, 764, 938, 956, 980, 1031
BstNSI RCATGY 1 cut(s) 24
BstPAI GACNNNNGTC 1 cut(s) 183
BstPI GGTNACC 1 cut(s) 804
BstSLI GKGCMC 1 cut(s) 166
BstV1I GCAGC 1 cut(s) 507
BstV2I GAAGAC 1 cut(s) 898
BstX2I RGATCY 2 cut(s) 575, 910
BstYI RGATCY 2 cut(s) 575, 910
BstZI CGGCCG 1 cut(s) 433
BsuI GTATCC 1 cut(s) 751
BsuRI GGCC 6 cut(s) 171, 267, 291, 435, 671, 901
BtgI CCRYGG 2 cut(s) 610, 1005
BtgZI GCGATG 1 cut(s) 987
BtsCI GGATG 2 cut(s) 410, 826
BtsIMutI CAGTG 1 cut(s) 832
Cac8I GCNNGC 2 cut(s) 22, 784
CfoI GCGC 2 cut(s) 685, 782
Cfr10I RCCGGY 1 cut(s) 1060
Cfr13I GGNCC 5 cut(s) 460, 670, 1009, 1027, 1051
Csp6I GTAC 3 cut(s) 570, 640, 851
CviAII CATG 3 cut(s) 21, 25, 731
CviQI GTAC 3 cut(s) 570, 640, 851
DdeI CTNAG 2 cut(s) 44, 1043
DinI GGCGCC 1 cut(s) 684
DpnI GATC 3 cut(s) 577, 912, 943
DpnII GATC 3 cut(s) 575, 910, 941
EaeI YGGCCR 4 cut(s) 169, 289, 433, 899
EagI CGGCCG 1 cut(s) 433
EciI GGCGGA 1 cut(s) 417
EclXI CGGCCG 1 cut(s) 433
Eco130I CCWWGG 3 cut(s) 487, 800, 896
Eco31I GGTCTC 2 cut(s) 477, 683
Eco47I GGWCC 4 cut(s) 460, 1009, 1027, 1051
Eco47III AGCGCT 1 cut(s) 781
Eco52I CGGCCG 1 cut(s) 433
Eco57I CTGAAG 1 cut(s) 753
Eco91I GGTNACC 1 cut(s) 804
EcoO109I RGGNCCY 1 cut(s) 1027
EcoO65I GGTNACC 1 cut(s) 804
EcoRII CCWGG 9 cut(s) 130, 514, 529, 693, 762, 936, 954, 978, 1029
EcoT14I CCWWGG 3 cut(s) 487, 800, 896
EcoT22I ATGCAT 1 cut(s) 26
EgeI GGCGCC 1 cut(s) 684
EheI GGCGCC 1 cut(s) 684
ErhI CCWWGG 3 cut(s) 487, 800, 896
FaeI CATG 3 cut(s) 24, 28, 734
FalI AAGNNNNNCTT 4 cut(s) 89, 121, 150, 182
FaqI GGGAC 8 cut(s) 171, 180, 473, 497, 830, 842, 995, 1037
FatI CATG 3 cut(s) 20, 24, 730
FauI CCCGC 2 cut(s) 350, 691
Fnu4HI GCNGC 9 cut(s) 274, 277, 289, 301, 379, 433, 469, 493, 496
FokI GGATG 2 cut(s) 417, 833
Fsp4HI GCNGC 9 cut(s) 274, 277, 289, 301, 379, 433, 469, 493, 496
FspBI CTAG 2 cut(s) 783, 1078
GlaI GCGC 2 cut(s) 684, 781
GluI GCNGC 9 cut(s) 274, 277, 289, 301, 379, 433, 469, 493, 496
GsaI CCCAGC 1 cut(s) 216
HaeII RGCGCY 2 cut(s) 686, 783
HaeIII GGCC 6 cut(s) 171, 267, 291, 435, 671, 901
HapII CCGG 4 cut(s) 237, 457, 1061, 1067
HhaI GCGC 2 cut(s) 685, 782
Hin1I GRCGYC 1 cut(s) 683
Hin1II CATG 3 cut(s) 24, 28, 734
Hin6I GCGC 2 cut(s) 683, 780
HinP1I GCGC 2 cut(s) 683, 780
HinfI GANTC 3 cut(s) 184, 193, 1001
HpaII CCGG 4 cut(s) 237, 457, 1061, 1067
HphI GGTGA 4 cut(s) 260, 458, 485, 798
Hpy166II GTNNAC 2 cut(s) 113, 727
Hpy188I TCNGA 2 cut(s) 772, 918
Hpy188III TCNNGA 1 cut(s) 885
Hpy8I GTNNAC 2 cut(s) 113, 727
HpyAV CCTTC 2 cut(s) 152, 434
HpyCH4III ACNGT 3 cut(s) 710, 752, 827
HpyCH4V TGCA 4 cut(s) 24, 594, 624, 830
HpyF10VI GCNNNNNNNGC 8 cut(s) 26, 71, 273, 285, 297, 375, 432, 501
HpyF3I CTNAG 2 cut(s) 44, 1043
Hsp92I GRCGYC 1 cut(s) 683
Hsp92II CATG 3 cut(s) 24, 28, 734
HspAI GCGC 2 cut(s) 683, 780
KasI GGCGCC 1 cut(s) 682
Kzo9I GATC 3 cut(s) 575, 910, 941
LmnI GCTCC 3 cut(s) 239, 664, 880
Lsp1109I GCAGC 1 cut(s) 507
LweI GCATC 1 cut(s) 964
MaeI CTAG 2 cut(s) 783, 1078
MaeIII GTNAC 2 cut(s) 221, 804
MalI GATC 3 cut(s) 577, 912, 943
MboI GATC 3 cut(s) 575, 910, 941
MboII GAAGA 2 cut(s) 570, 903
MflI RGATCY 2 cut(s) 575, 910
MhlI GDGCHC 1 cut(s) 166
MlsI TGGCCA 2 cut(s) 171, 901
MluCI AATT 4 cut(s) 564, 600, 604, 837
MluNI TGGCCA 2 cut(s) 171, 901
Mly113I GGCGCC 1 cut(s) 683
MlyI GAGTC 2 cut(s) 193, 202
MmeI TCCRAC 1 cut(s) 941
Mox20I TGGCCA 2 cut(s) 171, 901
Mph1103I ATGCAT 1 cut(s) 26
MscI TGGCCA 2 cut(s) 171, 901
MseI TTAA 1 cut(s) 603
MslI CAYNNNNRTG 1 cut(s) 13
Msp20I TGGCCA 2 cut(s) 171, 901
MspI CCGG 4 cut(s) 237, 457, 1061, 1067
MvaI CCWGG 9 cut(s) 132, 516, 531, 695, 764, 938, 956, 980, 1031
MwoI GCNNNNNNNGC 8 cut(s) 26, 71, 273, 285, 297, 375, 432, 501
NarI GGCGCC 1 cut(s) 683
NciI CCSGG 2 cut(s) 458, 1068
NdeII GATC 3 cut(s) 575, 910, 941
NheI GCTAGC 1 cut(s) 782
NlaIII CATG 3 cut(s) 24, 28, 734
NlaIV GGNNCC 9 cut(s) 241, 461, 672, 684, 960, 990, 1011, 1053, 1065
NmeAIII GCCGAG 2 cut(s) 293, 461
NmuCI GTSAC 2 cut(s) 221, 804
NsiI ATGCAT 1 cut(s) 26
NspI RCATGY 1 cut(s) 24
PaeI GCATGC 1 cut(s) 24
PasI CCCWGGG 1 cut(s) 937
PfeI GAWTC 1 cut(s) 1001
PflMI CCANNNNNTGG 1 cut(s) 736
PkrI GCNGC 9 cut(s) 275, 278, 290, 302, 380, 434, 470, 494, 497
PleI GAGTC 2 cut(s) 192, 201
PluTI GGCGCC 1 cut(s) 686
PpsI GAGTC 2 cut(s) 192, 201
PpuMI RGGWCCY 1 cut(s) 1027
PshAI GACNNNNGTC 1 cut(s) 183
PshBI ATTAAT 1 cut(s) 603
Psp5II RGGWCCY 1 cut(s) 1027
Psp6I CCWGG 9 cut(s) 130, 514, 529, 693, 762, 936, 954, 978, 1029
PspEI GGTNACC 1 cut(s) 804
PspFI CCCAGC 1 cut(s) 212
PspGI CCWGG 9 cut(s) 130, 514, 529, 693, 762, 936, 954, 978, 1029
PspN4I GGNNCC 9 cut(s) 241, 461, 672, 684, 960, 990, 1011, 1053, 1065
PspPI GGNCC 5 cut(s) 460, 670, 1009, 1027, 1051
PspPPI RGGWCCY 1 cut(s) 1027
PsuI RGATCY 2 cut(s) 575, 910
RsaI GTAC 3 cut(s) 571, 641, 852
RsaNI GTAC 3 cut(s) 570, 640, 851
RseI CAYNNNNRTG 1 cut(s) 13
SaqAI TTAA 1 cut(s) 603
SatI GCNGC 9 cut(s) 274, 277, 289, 301, 379, 433, 469, 493, 496
Sau3AI GATC 3 cut(s) 575, 910, 941
Sau96I GGNCC 5 cut(s) 460, 670, 1009, 1027, 1051
ScaI AGTACT 1 cut(s) 571
SchI GAGTC 2 cut(s) 193, 202
SduI GDGCHC 1 cut(s) 166
SfaNI GCATC 1 cut(s) 964
SfoI GGCGCC 1 cut(s) 684
SinI GGWCC 4 cut(s) 460, 1009, 1027, 1051
SmiMI CAYNNNNRTG 1 cut(s) 13
SphI GCATGC 1 cut(s) 24
Sse9I AATT 4 cut(s) 564, 600, 604, 837
SspDI GGCGCC 1 cut(s) 682
SspMI CTAG 2 cut(s) 783, 1078
StyI CCWWGG 3 cut(s) 487, 800, 896
TaaI ACNGT 3 cut(s) 710, 752, 827
TaqI TCGA 2 cut(s) 645, 789
TasI AATT 4 cut(s) 564, 600, 604, 837
TatI WGTACW 2 cut(s) 569, 639
TauI GCSGC 8 cut(s) 276, 279, 291, 303, 381, 435, 471, 495
TfiI GAWTC 1 cut(s) 1001
Tru1I TTAA 1 cut(s) 603
Tru9I TTAA 1 cut(s) 603
TscAI CASTG 1 cut(s) 832
TseFI GTSAC 2 cut(s) 221, 804
TseI GCWGC 1 cut(s) 495
Tsp45I GTSAC 2 cut(s) 221, 804
TspDTI ATGAA 2 cut(s) 623, 747
TspGWI ACGGA 3 cut(s) 495, 867, 994
TspRI CASTG 1 cut(s) 832
Van91I CCANNNNNTGG 1 cut(s) 736
VpaK11BI GGWCC 4 cut(s) 460, 1009, 1027, 1051
VspI ATTAAT 1 cut(s) 603
XceI RCATGY 1 cut(s) 24
XspI CTAG 2 cut(s) 783, 1078
ZrmI AGTACT 1 cut(s) 571
Zsp2I ATGCAT 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.