Rmu_co8070730.1_g000001

glycine-rich cell wall structural protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8070730.1
OG0016784
Physical Location & Seq
Reverse (-)
2 .. 559
558 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8070730.1_g000001.1.cds

Sequence Viewer

Length: 558 bp
atggcaacaccaaaatgggcatgcatggctcttttgctatttctcagcttgggagttggctctgctggtagagccaaagtggttgataaaccagaaaagtttgtcttgggtggacatattggtttgaaaccaggcttccacattggaggtattattgaaggggcacttggccacaatgacaagagtccccagagtccccccactccaccacccagcccaagtgacacctctgttgccggagccagaggtgatggttatggtggaggccgaggcggcggctatggaagcggccaagtaggcggcattattgggggaggaggaggaggtggaggcggtagtgttggtggtgggtttggcgggggtggaagcggaggaggcggctttggtagaggtggaggtggcggatggagtggtggaggaggtggcggtggcggccgagaaggtggtgatgattgccgggaccaaagcggcggtgatgacggagaccaaggcggcagcccaagcattgtcgtcccaggttttaccattcctggctttgacattggcggtgttatcggc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

186

Amino Acids

17.09

Weight (kDa)

5.83

Isoelectric Point (pI)

61.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016784)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g09400 FvH4_3g09400
prunus_persica Prupe.4G045400_v2.0.a1
pyrus_communis pycom05g29190
rosa_laevigata RLG00000031547
rosa_multiflora Rmu_co8070730.1_g000001 Rmu_sc0001626.1_g000021 Rmu_sc0024443.1_g000001
rosa_roxburghii Rroxscaffold_1G00068280
rosa_rugosa Rorug04G0434300
rosa_samantha Rh5AG062200 Rh5BG058900 Rh5CG069400 Rh5DG058300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 3 cut(s) 169, 289, 433
AgsI TTSAA 2 cut(s) 127, 158
AjnI CCWGG 3 cut(s) 130, 514, 529
AjuI GAANNNNNNNTTGG 2 cut(s) 150, 182
AluBI AGCT 1 cut(s) 48
AluI AGCT 1 cut(s) 48
Alw26I GTCTC 1 cut(s) 477
AoxI GGCC 4 cut(s) 169, 265, 289, 433
ApeKI GCWGC 1 cut(s) 495
AspS9I GGNCC 1 cut(s) 460
AsuC2I CCSGG 1 cut(s) 458
AsuHPI GGTGA 3 cut(s) 260, 458, 485
AvaII GGWCC 1 cut(s) 460
BaeGI GKGCMC 1 cut(s) 166
BalI TGGCCA 1 cut(s) 171
BbvI GCAGC 1 cut(s) 507
BccI CCATC 2 cut(s) 245, 399
BciT130I CCWGG 3 cut(s) 132, 516, 531
BcnI CCSGG 1 cut(s) 458
BcoDI GTCTC 1 cut(s) 477
BglI GCCNNNNNGGC 2 cut(s) 273, 297
BisI GCNGC 9 cut(s) 274, 277, 289, 301, 379, 433, 469, 493, 496
BlsI GCNGC 9 cut(s) 275, 278, 290, 302, 380, 434, 470, 494, 497
Bme1390I CCNGG 4 cut(s) 132, 458, 516, 531
Bme18I GGWCC 1 cut(s) 460
BmgT120I GGNCC 1 cut(s) 460
BmiI GGNNCC 2 cut(s) 241, 461
BmrFI CCNGG 4 cut(s) 132, 458, 516, 531
BoxI GACNNNNGTC 1 cut(s) 183
BpuMI CCSGG 1 cut(s) 458
BsaI GGTCTC 1 cut(s) 477
BsaJI CCNNGG 3 cut(s) 268, 487, 514
BseBI CCWGG 3 cut(s) 132, 516, 531
BseDI CCNNGG 3 cut(s) 268, 487, 514
BseGI GGATG 1 cut(s) 410
BseMII CTCAG 1 cut(s) 58
BseRI GAGGAG 5 cut(s) 330, 333, 336, 387, 432
BseSI GKGCMC 1 cut(s) 166
BseX3I CGGCCG 1 cut(s) 433
BseXI GCAGC 1 cut(s) 507
BseYI CCCAGC 1 cut(s) 212
Bsh1285I CGRYCG 1 cut(s) 436
BshFI GGCC 4 cut(s) 171, 267, 291, 435
BsiEI CGRYCG 1 cut(s) 436
BsiSI CCGG 2 cut(s) 237, 457
BslFI GGGAC 4 cut(s) 171, 180, 473, 497
BsmAI GTCTC 1 cut(s) 477
BsmFI GGGAC 4 cut(s) 171, 180, 473, 497
BsnI GGCC 4 cut(s) 171, 267, 291, 435
Bso31I GGTCTC 1 cut(s) 477
Bsp1286I GDGCHC 1 cut(s) 166
BspANI GGCC 4 cut(s) 171, 267, 291, 435
BspCNI CTCAG 1 cut(s) 57
BspLI GGNNCC 2 cut(s) 241, 461
BspTNI GGTCTC 1 cut(s) 477
BssECI CCNNGG 3 cut(s) 268, 487, 514
BssT1I CCWWGG 1 cut(s) 487
Bst2UI CCWGG 3 cut(s) 132, 516, 531
BstC8I GCNNGC 1 cut(s) 22
BstDEI CTNAG 1 cut(s) 44
BstF5I GGATG 1 cut(s) 410
BstMAI GTCTC 1 cut(s) 477
BstMCI CGRYCG 1 cut(s) 436
BstMWI GCNNNNNNNGC 8 cut(s) 26, 71, 273, 285, 297, 375, 432, 501
BstNI CCWGG 3 cut(s) 132, 516, 531
BstNSI RCATGY 1 cut(s) 24
BstPAI GACNNNNGTC 1 cut(s) 183
BstSCI CCNGG 4 cut(s) 130, 456, 514, 529
BstSLI GKGCMC 1 cut(s) 166
BstV1I GCAGC 1 cut(s) 507
BstZI CGGCCG 1 cut(s) 433
BsuRI GGCC 4 cut(s) 171, 267, 291, 435
BtsCI GGATG 1 cut(s) 410
Cac8I GCNNGC 1 cut(s) 22
Cfr13I GGNCC 1 cut(s) 460
CviAII CATG 2 cut(s) 21, 25
DdeI CTNAG 1 cut(s) 44
EaeI YGGCCR 3 cut(s) 169, 289, 433
EagI CGGCCG 1 cut(s) 433
EciI GGCGGA 1 cut(s) 417
EclXI CGGCCG 1 cut(s) 433
Eco130I CCWWGG 1 cut(s) 487
Eco31I GGTCTC 1 cut(s) 477
Eco47I GGWCC 1 cut(s) 460
Eco52I CGGCCG 1 cut(s) 433
EcoRII CCWGG 3 cut(s) 130, 514, 529
EcoT14I CCWWGG 1 cut(s) 487
EcoT22I ATGCAT 1 cut(s) 26
ErhI CCWWGG 1 cut(s) 487
FaeI CATG 2 cut(s) 24, 28
FaiI YATR 5 cut(s) 22, 26, 117, 258, 282
FalI AAGNNNNNCTT 4 cut(s) 89, 121, 150, 182
FaqI GGGAC 4 cut(s) 171, 180, 473, 497
FatI CATG 2 cut(s) 20, 24
FauI CCCGC 1 cut(s) 350
Fnu4HI GCNGC 9 cut(s) 274, 277, 289, 301, 379, 433, 469, 493, 496
FokI GGATG 1 cut(s) 417
Fsp4HI GCNGC 9 cut(s) 274, 277, 289, 301, 379, 433, 469, 493, 496
GluI GCNGC 9 cut(s) 274, 277, 289, 301, 379, 433, 469, 493, 496
GsaI CCCAGC 1 cut(s) 216
HaeIII GGCC 4 cut(s) 171, 267, 291, 435
HapII CCGG 2 cut(s) 237, 457
Hin1II CATG 2 cut(s) 24, 28
HinfI GANTC 2 cut(s) 184, 193
HpaII CCGG 2 cut(s) 237, 457
HphI GGTGA 3 cut(s) 260, 458, 485
Hpy166II GTNNAC 1 cut(s) 113
Hpy8I GTNNAC 1 cut(s) 113
HpyAV CCTTC 2 cut(s) 152, 434
HpyCH4V TGCA 1 cut(s) 24
HpyF10VI GCNNNNNNNGC 8 cut(s) 26, 71, 273, 285, 297, 375, 432, 501
HpyF3I CTNAG 1 cut(s) 44
Hsp92II CATG 2 cut(s) 24, 28
LmnI GCTCC 1 cut(s) 239
Lsp1109I GCAGC 1 cut(s) 507
MaeIII GTNAC 1 cut(s) 221
MhlI GDGCHC 1 cut(s) 166
MlsI TGGCCA 1 cut(s) 171
MluNI TGGCCA 1 cut(s) 171
MlyI GAGTC 2 cut(s) 193, 202
Mox20I TGGCCA 1 cut(s) 171
Mph1103I ATGCAT 1 cut(s) 26
MscI TGGCCA 1 cut(s) 171
MslI CAYNNNNRTG 1 cut(s) 13
Msp20I TGGCCA 1 cut(s) 171
MspI CCGG 2 cut(s) 237, 457
MspR9I CCNGG 4 cut(s) 132, 458, 516, 531
MvaI CCWGG 3 cut(s) 132, 516, 531
MwoI GCNNNNNNNGC 8 cut(s) 26, 71, 273, 285, 297, 375, 432, 501
NciI CCSGG 1 cut(s) 458
NlaIII CATG 2 cut(s) 24, 28
NlaIV GGNNCC 2 cut(s) 241, 461
NmeAIII GCCGAG 2 cut(s) 293, 461
NmuCI GTSAC 1 cut(s) 221
NsiI ATGCAT 1 cut(s) 26
NspI RCATGY 1 cut(s) 24
PaeI GCATGC 1 cut(s) 24
PkrI GCNGC 9 cut(s) 275, 278, 290, 302, 380, 434, 470, 494, 497
PleI GAGTC 2 cut(s) 192, 201
PpsI GAGTC 2 cut(s) 192, 201
PshAI GACNNNNGTC 1 cut(s) 183
Psp6I CCWGG 3 cut(s) 130, 514, 529
PspFI CCCAGC 1 cut(s) 212
PspGI CCWGG 3 cut(s) 130, 514, 529
PspN4I GGNNCC 2 cut(s) 241, 461
PspPI GGNCC 1 cut(s) 460
RseI CAYNNNNRTG 1 cut(s) 13
SatI GCNGC 9 cut(s) 274, 277, 289, 301, 379, 433, 469, 493, 496
Sau96I GGNCC 1 cut(s) 460
SchI GAGTC 2 cut(s) 193, 202
ScrFI CCNGG 4 cut(s) 132, 458, 516, 531
SduI GDGCHC 1 cut(s) 166
SinI GGWCC 1 cut(s) 460
SmiMI CAYNNNNRTG 1 cut(s) 13
SphI GCATGC 1 cut(s) 24
StyD4I CCNGG 4 cut(s) 130, 456, 514, 529
StyI CCWWGG 1 cut(s) 487
TauI GCSGC 8 cut(s) 276, 279, 291, 303, 381, 435, 471, 495
TseFI GTSAC 1 cut(s) 221
TseI GCWGC 1 cut(s) 495
Tsp45I GTSAC 1 cut(s) 221
TspGWI ACGGA 1 cut(s) 495
VpaK11BI GGWCC 1 cut(s) 460
XceI RCATGY 1 cut(s) 24
Zsp2I ATGCAT 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.