Rh5BG058900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0016784
Physical Location & Seq
Reverse (-)
4861310 .. 4861720
411 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG058900.1

Sequence Viewer

Length: 411 bp
ATGCCATCCACATTGGGGCCAGAGACCTTGGCGGGAAGCAACGGTCAAAAACAAAATATGAACCATGAAGAGGAGGATAAACACAGTATGGATACCGTGGCTTCAGAACCAAGCAGTAGCGACACGAAACCAAGGTCACCAGACCCAATGGATGTCCGTGCACCCCCAAACCATGTCCCTGTACCAGTCCCAGACCCAAACACTGCCCCGTCATTAAGGGGGAGACCTCGGCCACCAATAGATCCTCCGACACCACCAAGCAACACCCTGGGATCAAGCAATGCCCTGGCACCAGAACCAAGCGATGCCCCAGAACCGGAACCAAGCTATGATTCCGTGGTCCCAAAACCAAGTGAGGACCTGGAAGAGGAACTAAGTGTGGTTCCAAAACCAGCACCAGGATTAGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

136

Amino Acids

14.27

Weight (kDa)

4.44

Isoelectric Point (pI)

82.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016784)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g09400 FvH4_3g09400
prunus_persica Prupe.4G045400_v2.0.a1
pyrus_communis pycom05g29190
rosa_laevigata RLG00000031547
rosa_multiflora Rmu_co8070730.1_g000001 Rmu_sc0001626.1_g000021 Rmu_sc0024443.1_g000001
rosa_roxburghii Rroxscaffold_1G00068280
rosa_rugosa Rorug04G0434300
rosa_samantha Rh5AG062200 Rh5BG058900 Rh5CG069400 Rh5DG058300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 289
AciI CCGC 1 cut(s) 32
AclWI GGATC 2 cut(s) 236, 280
AcoI YGGCCR 1 cut(s) 230
AcuI CTGAAG 1 cut(s) 87
AfaI GTAC 1 cut(s) 183
AfiI CCNNNNNNNGG 6 cut(s) 15, 70, 316, 367, 398, 404
AjnI CCWGG 4 cut(s) 267, 285, 360, 397
AjuI GAANNNNNNNTTGG 2 cut(s) 316, 348
AluBI AGCT 1 cut(s) 327
AluI AGCT 1 cut(s) 327
Alw21I GWGCWC 1 cut(s) 163
Alw26I GTCTC 2 cut(s) 17, 217
Alw44I GTGCAC 1 cut(s) 159
AlwI GGATC 2 cut(s) 236, 280
AoxI GGCC 2 cut(s) 17, 230
ApaLI GTGCAC 1 cut(s) 159
ArsI GACNNNNNNTTYG 2 cut(s) 119, 151
AspS9I GGNCC 3 cut(s) 17, 340, 358
AsuHPI GGTGA 1 cut(s) 129
AvaII GGWCC 2 cut(s) 340, 358
BaeGI GKGCMC 1 cut(s) 163
BanI GGYRCC 1 cut(s) 289
Bbv12I GWGCWC 1 cut(s) 163
BccI CCATC 1 cut(s) 13
BciT130I CCWGG 4 cut(s) 269, 287, 362, 399
BciVI GTATCC 1 cut(s) 85
BcoDI GTCTC 2 cut(s) 17, 217
BfaI CTAG 1 cut(s) 409
BfuI GTATCC 1 cut(s) 85
Bme1390I CCNGG 4 cut(s) 269, 287, 362, 399
Bme18I GGWCC 2 cut(s) 340, 358
BmgT120I GGNCC 3 cut(s) 17, 340, 358
BmiI GGNNCC 5 cut(s) 18, 291, 321, 342, 384
BmrFI CCNGG 4 cut(s) 269, 287, 362, 399
BmsI GCATC 1 cut(s) 295
BsaI GGTCTC 2 cut(s) 17, 217
BsaJI CCNNGG 8 cut(s) 27, 96, 131, 227, 267, 268, 285, 336
BsaWI WCCGGW 1 cut(s) 316
Bsc4I CCNNNNNNNGG 6 cut(s) 15, 70, 316, 367, 398, 404
Bse1I ACTGG 1 cut(s) 185
Bse3DI GCAATG 1 cut(s) 286
BseBI CCWGG 4 cut(s) 269, 287, 362, 399
BseDI CCNNGG 8 cut(s) 27, 96, 131, 227, 267, 268, 285, 336
BseGI GGATG 2 cut(s) 5, 157
BseLI CCNNNNNNNGG 6 cut(s) 15, 70, 316, 367, 398, 404
BseMI GCAATG 1 cut(s) 286
BseNI ACTGG 1 cut(s) 185
BseRI GAGGAG 1 cut(s) 86
BseSI GKGCMC 1 cut(s) 163
BshFI GGCC 2 cut(s) 19, 232
BshNI GGYRCC 1 cut(s) 289
BsiHKAI GWGCWC 1 cut(s) 163
BsiSI CCGG 1 cut(s) 317
BslFI GGGAC 3 cut(s) 161, 173, 326
BslI CCNNNNNNNGG 6 cut(s) 15, 70, 316, 367, 398, 404
BsmAI GTCTC 2 cut(s) 17, 217
BsmFI GGGAC 3 cut(s) 161, 173, 326
BsnI GGCC 2 cut(s) 19, 232
Bso31I GGTCTC 2 cut(s) 17, 217
Bsp1286I GDGCHC 1 cut(s) 163
Bsp143I GATC 2 cut(s) 241, 272
BspACI CCGC 1 cut(s) 32
BspANI GGCC 2 cut(s) 19, 232
BspLI GGNNCC 5 cut(s) 18, 291, 321, 342, 384
BspPI GGATC 2 cut(s) 236, 280
BspT107I GGYRCC 1 cut(s) 289
BspTNI GGTCTC 2 cut(s) 17, 217
BsrDI GCAATG 1 cut(s) 286
BsrI ACTGG 1 cut(s) 185
BssECI CCNNGG 8 cut(s) 27, 96, 131, 227, 267, 268, 285, 336
BssMI GATC 2 cut(s) 241, 272
BssT1I CCWWGG 2 cut(s) 27, 131
Bst2UI CCWGG 4 cut(s) 269, 287, 362, 399
Bst4CI ACNGT 3 cut(s) 44, 86, 97
Bst6I CTCTTC 2 cut(s) 63, 360
BstDEI CTNAG 1 cut(s) 374
BstDSI CCRYGG 2 cut(s) 96, 336
BstEII GGTNACC 1 cut(s) 135
BstENI CCTNNNNNAGG 1 cut(s) 365
BstF5I GGATG 2 cut(s) 5, 157
BstKTI GATC 2 cut(s) 244, 275
BstMAI GTCTC 2 cut(s) 17, 217
BstMBI GATC 2 cut(s) 241, 272
BstNI CCWGG 4 cut(s) 269, 287, 362, 399
BstPI GGTNACC 1 cut(s) 135
BstSCI CCNGG 4 cut(s) 267, 285, 360, 397
BstSLI GKGCMC 1 cut(s) 163
BstX2I RGATCY 1 cut(s) 241
BstYI RGATCY 1 cut(s) 241
BsuI GTATCC 1 cut(s) 85
BsuRI GGCC 2 cut(s) 19, 232
BtgI CCRYGG 2 cut(s) 96, 336
BtgZI GCGATG 1 cut(s) 318
BtsCI GGATG 2 cut(s) 5, 157
BtsI GCAGTG 1 cut(s) 201
BtsIMutI CAGTG 1 cut(s) 201
Cfr13I GGNCC 3 cut(s) 17, 340, 358
Csp6I GTAC 1 cut(s) 182
CviAII CATG 2 cut(s) 65, 173
CviJI RGCY 5 cut(s) 19, 101, 232, 327, 408
CviKI_1 RGCY 5 cut(s) 19, 101, 232, 327, 408
CviQI GTAC 1 cut(s) 182
DdeI CTNAG 1 cut(s) 374
DpnI GATC 2 cut(s) 243, 274
DpnII GATC 2 cut(s) 241, 272
EaeI YGGCCR 1 cut(s) 230
Eam1104I CTCTTC 2 cut(s) 63, 360
EarI CTCTTC 2 cut(s) 63, 360
Eco130I CCWWGG 2 cut(s) 27, 131
Eco31I GGTCTC 2 cut(s) 17, 217
Eco47I GGWCC 2 cut(s) 340, 358
Eco57I CTGAAG 1 cut(s) 87
Eco91I GGTNACC 1 cut(s) 135
EcoNI CCTNNNNNAGG 1 cut(s) 365
EcoO109I RGGNCCY 1 cut(s) 358
EcoO65I GGTNACC 1 cut(s) 135
EcoRII CCWGG 4 cut(s) 267, 285, 360, 397
EcoT14I CCWWGG 2 cut(s) 27, 131
ErhI CCWWGG 2 cut(s) 27, 131
FaeI CATG 2 cut(s) 68, 176
FaiI YATR 5 cut(s) 59, 66, 89, 174, 330
FaqI GGGAC 3 cut(s) 161, 173, 326
FatI CATG 2 cut(s) 64, 172
FauI CCCGC 1 cut(s) 25
FokI GGATG 1 cut(s) 164
FspBI CTAG 1 cut(s) 409
HaeIII GGCC 2 cut(s) 19, 232
HapII CCGG 1 cut(s) 317
Hin1II CATG 2 cut(s) 68, 176
HinfI GANTC 1 cut(s) 332
HpaII CCGG 1 cut(s) 317
HphI GGTGA 1 cut(s) 129
Hpy166II GTNNAC 1 cut(s) 161
Hpy188I TCNGA 2 cut(s) 106, 249
Hpy8I GTNNAC 1 cut(s) 161
HpyCH4III ACNGT 3 cut(s) 44, 86, 97
HpyCH4V TGCA 1 cut(s) 161
HpyF3I CTNAG 1 cut(s) 374
Hsp92II CATG 2 cut(s) 68, 176
Kzo9I GATC 2 cut(s) 241, 272
LweI GCATC 1 cut(s) 295
MaeI CTAG 1 cut(s) 409
MaeIII GTNAC 1 cut(s) 135
MalI GATC 2 cut(s) 243, 274
MboI GATC 2 cut(s) 241, 272
MboII GAAGA 2 cut(s) 80, 377
MflI RGATCY 1 cut(s) 241
MhlI GDGCHC 1 cut(s) 163
MmeI TCCRAC 1 cut(s) 272
MnlI CCTC 6 cut(s) 64, 67, 237, 255, 349, 361
MseI TTAA 1 cut(s) 215
MspI CCGG 1 cut(s) 317
MspR9I CCNGG 4 cut(s) 269, 287, 362, 399
MvaI CCWGG 4 cut(s) 269, 287, 362, 399
NdeII GATC 2 cut(s) 241, 272
NlaIII CATG 2 cut(s) 68, 176
NlaIV GGNNCC 5 cut(s) 18, 291, 321, 342, 384
NmeAIII GCCGAG 1 cut(s) 208
NmuCI GTSAC 1 cut(s) 135
PasI CCCWGGG 1 cut(s) 268
PfeI GAWTC 1 cut(s) 332
PpuMI RGGWCCY 1 cut(s) 358
Psp5II RGGWCCY 1 cut(s) 358
Psp6I CCWGG 4 cut(s) 267, 285, 360, 397
PspEI GGTNACC 1 cut(s) 135
PspGI CCWGG 4 cut(s) 267, 285, 360, 397
PspN4I GGNNCC 5 cut(s) 18, 291, 321, 342, 384
PspPI GGNCC 3 cut(s) 17, 340, 358
PspPPI RGGWCCY 1 cut(s) 358
PsuI RGATCY 1 cut(s) 241
RsaI GTAC 1 cut(s) 183
RsaNI GTAC 1 cut(s) 182
SaqAI TTAA 1 cut(s) 215
Sau3AI GATC 2 cut(s) 241, 272
Sau96I GGNCC 3 cut(s) 17, 340, 358
ScrFI CCNGG 4 cut(s) 269, 287, 362, 399
SduI GDGCHC 1 cut(s) 163
SetI ASST 5 cut(s) 29, 137, 229, 329, 363
SfaNI GCATC 1 cut(s) 295
SinI GGWCC 2 cut(s) 340, 358
SsiI CCGC 1 cut(s) 32
SspMI CTAG 1 cut(s) 409
StyD4I CCNGG 4 cut(s) 267, 285, 360, 397
StyI CCWWGG 2 cut(s) 27, 131
TaaI ACNGT 3 cut(s) 44, 86, 97
TfiI GAWTC 1 cut(s) 332
Tru1I TTAA 1 cut(s) 215
Tru9I TTAA 1 cut(s) 215
TscAI CASTG 1 cut(s) 208
TseFI GTSAC 1 cut(s) 135
Tsp45I GTSAC 1 cut(s) 135
TspDTI ATGAA 2 cut(s) 74, 81
TspGWI ACGGA 2 cut(s) 146, 325
TspRI CASTG 1 cut(s) 208
VneI GTGCAC 1 cut(s) 159
VpaK11BI GGWCC 2 cut(s) 340, 358
XagI CCTNNNNNAGG 1 cut(s) 365
XspI CTAG 1 cut(s) 409
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.