Rmu_sc0024443.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0024443.1
OG0016784
Physical Location & Seq
Reverse (-)
375 .. 1454
1080 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0024443.1_g000001.1.cds

Sequence Viewer

Length: 975 bp
atggcaacaccaaaatgggcatgcatggctcttttgctatttctcagcttgggagttggctctgctggtagagccaaagtggttgataaaccagaaaagtttgtcttgggtggacatattggtttgaaaccaggcttccacattggaggtattattgaaggggcacttggccacaatgacaagagtccccagagtccccccactccaccacccagcccaagtgacacctctgttgccggagccagaggtgatggttatggtggaggccgaggcggcggctatggaagcggccaagtaggcggcattattgggggaggaggaggaggtggaggcggtagtgttggtggtgggtttggcgggggtggaagcggaggaggcggctttggtagaggtggaggtggcggatggagtggtggaggaggtggcggtggcggccgagaaggtggtgatgattgccgggaccaaagcggcggtgatgacggagaccaaggcggcagcccaagcattgtcgtcccaggttttaccattcctggctttgacattggcggtgttatcggcgttggaattagtactggatcttctggtctatactgcacaccaattaattgccgtggtaatgactgcaagggagttcatttgtacttcgataactctaatgctcccaatatggcccccattttggcgccagagaccctggcgggaagcaacggtcaaaaacaaaatgtgaaccatgaagtggaggataaacacatcccagacccaaacaatgctccgtcatcacggggaagaccttggccaccaatagatcctccgactccaccaagcaacaccctgggatcaagcaatgccctggcaccagaaccaagcgatgccctggaactggaaccaagctatgattcagtggtcccaaaaccaagtaaggacctggaagtagaactaagcgtggtcccaaaaccggcaccgggattagactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

324

Amino Acids

31.56

Weight (kDa)

5.01

Isoelectric Point (pI)

57.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016784)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g09400 FvH4_3g09400
prunus_persica Prupe.4G045400_v2.0.a1
pyrus_communis pycom05g29190
rosa_laevigata RLG00000031547
rosa_multiflora Rmu_co8070730.1_g000001 Rmu_sc0001626.1_g000021 Rmu_sc0024443.1_g000001
rosa_roxburghii Rroxscaffold_1G00068280
rosa_rugosa Rorug04G0434300
rosa_samantha Rh5AG062200 Rh5BG058900 Rh5CG069400 Rh5DG058300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 682, 853, 958
AccB7I CCANNNNNTGG 1 cut(s) 736
AclWI GGATC 3 cut(s) 583, 800, 844
AcoI YGGCCR 4 cut(s) 169, 289, 433, 794
AcyI GRCGYC 1 cut(s) 683
AfaI GTAC 2 cut(s) 571, 641
AfiI CCNNNNNNNGG 5 cut(s) 679, 736, 880, 955, 962
AgsI TTSAA 2 cut(s) 127, 158
AjnI CCWGG 8 cut(s) 130, 514, 529, 693, 831, 849, 873, 924
AjuI GAANNNNNNNTTGG 4 cut(s) 150, 182, 880, 912
AluBI AGCT 2 cut(s) 48, 891
AluI AGCT 2 cut(s) 48, 891
Alw26I GTCTC 2 cut(s) 477, 683
AlwI GGATC 3 cut(s) 583, 800, 844
AoxI GGCC 6 cut(s) 169, 265, 289, 433, 669, 794
ApeKI GCWGC 1 cut(s) 495
AseI ATTAAT 1 cut(s) 603
AspLEI GCGC 1 cut(s) 685
AspS9I GGNCC 5 cut(s) 460, 670, 904, 922, 946
AsuC2I CCSGG 2 cut(s) 458, 963
AsuHPI GGTGA 3 cut(s) 260, 458, 485
AvaII GGWCC 4 cut(s) 460, 904, 922, 946
BaeGI GKGCMC 1 cut(s) 166
BalI TGGCCA 2 cut(s) 171, 796
BanI GGYRCC 3 cut(s) 682, 853, 958
BarI GAAGNNNNNNTAC 2 cut(s) 562, 594
BbsI GAAGAC 1 cut(s) 793
BbvI GCAGC 1 cut(s) 507
BccI CCATC 2 cut(s) 245, 399
BceAI ACGGC 1 cut(s) 594
BciT130I CCWGG 8 cut(s) 132, 516, 531, 695, 833, 851, 875, 926
BcnI CCSGG 2 cut(s) 458, 963
BcoDI GTCTC 2 cut(s) 477, 683
BfaI CTAG 1 cut(s) 973
BfoI RGCGCY 1 cut(s) 686
BglI GCCNNNNNGGC 2 cut(s) 273, 297
BisI GCNGC 9 cut(s) 274, 277, 289, 301, 379, 433, 469, 493, 496
BlsI GCNGC 9 cut(s) 275, 278, 290, 302, 380, 434, 470, 494, 497
BmcAI AGTACT 1 cut(s) 571
Bme18I GGWCC 4 cut(s) 460, 904, 922, 946
BmgT120I GGNCC 5 cut(s) 460, 670, 904, 922, 946
BmiI GGNNCC 9 cut(s) 241, 461, 672, 684, 855, 885, 906, 948, 960
BmsI GCATC 1 cut(s) 859
BoxI GACNNNNGTC 1 cut(s) 183
BpiI GAAGAC 1 cut(s) 793
BpuMI CCSGG 2 cut(s) 458, 963
BsaHI GRCGYC 1 cut(s) 683
BsaI GGTCTC 2 cut(s) 477, 683
Bsc4I CCNNNNNNNGG 5 cut(s) 679, 736, 880, 955, 962
Bse118I RCCGGY 1 cut(s) 955
Bse1I ACTGG 2 cut(s) 577, 885
Bse3DI GCAATG 1 cut(s) 850
BseBI CCWGG 8 cut(s) 132, 516, 531, 695, 833, 851, 875, 926
BseGI GGATG 2 cut(s) 410, 750
BseLI CCNNNNNNNGG 5 cut(s) 679, 736, 880, 955, 962
BseMI GCAATG 1 cut(s) 850
BseMII CTCAG 1 cut(s) 58
BseNI ACTGG 2 cut(s) 577, 885
BseRI GAGGAG 5 cut(s) 330, 333, 336, 387, 432
BseSI GKGCMC 1 cut(s) 166
BseX3I CGGCCG 1 cut(s) 433
BseXI GCAGC 1 cut(s) 507
BseYI CCCAGC 1 cut(s) 212
BsgI GTGCAG 1 cut(s) 577
Bsh1285I CGRYCG 1 cut(s) 436
BshFI GGCC 6 cut(s) 171, 267, 291, 435, 671, 796
BshNI GGYRCC 3 cut(s) 682, 853, 958
BsiEI CGRYCG 1 cut(s) 436
BsiSI CCGG 4 cut(s) 237, 457, 956, 962
BslFI GGGAC 6 cut(s) 171, 180, 473, 497, 890, 932
BslI CCNNNNNNNGG 5 cut(s) 679, 736, 880, 955, 962
BsmAI GTCTC 2 cut(s) 477, 683
BsmFI GGGAC 6 cut(s) 171, 180, 473, 497, 890, 932
BsnI GGCC 6 cut(s) 171, 267, 291, 435, 671, 796
Bso31I GGTCTC 2 cut(s) 477, 683
Bsp1286I GDGCHC 1 cut(s) 166
Bsp143I GATC 3 cut(s) 575, 805, 836
BspANI GGCC 6 cut(s) 171, 267, 291, 435, 671, 796
BspCNI CTCAG 1 cut(s) 57
BspLI GGNNCC 9 cut(s) 241, 461, 672, 684, 855, 885, 906, 948, 960
BspPI GGATC 3 cut(s) 583, 800, 844
BspT107I GGYRCC 3 cut(s) 682, 853, 958
BspTNI GGTCTC 2 cut(s) 477, 683
BsrDI GCAATG 1 cut(s) 850
BsrFI RCCGGY 1 cut(s) 955
BsrI ACTGG 2 cut(s) 577, 885
BssAI RCCGGY 1 cut(s) 955
BssMI GATC 3 cut(s) 575, 805, 836
BssNI GRCGYC 1 cut(s) 683
BssT1I CCWWGG 2 cut(s) 487, 791
Bst2UI CCWGG 8 cut(s) 132, 516, 531, 695, 833, 851, 875, 926
Bst4CI ACNGT 1 cut(s) 710
BstACI GRCGYC 1 cut(s) 683
BstC8I GCNNGC 1 cut(s) 22
BstDEI CTNAG 2 cut(s) 44, 938
BstDSI CCRYGG 1 cut(s) 610
BstF5I GGATG 2 cut(s) 410, 750
BstH2I RGCGCY 1 cut(s) 686
BstHHI GCGC 1 cut(s) 685
BstKTI GATC 3 cut(s) 578, 808, 839
BstMAI GTCTC 2 cut(s) 477, 683
BstMBI GATC 3 cut(s) 575, 805, 836
BstMCI CGRYCG 1 cut(s) 436
BstMWI GCNNNNNNNGC 8 cut(s) 26, 71, 273, 285, 297, 375, 432, 501
BstNI CCWGG 8 cut(s) 132, 516, 531, 695, 833, 851, 875, 926
BstNSI RCATGY 1 cut(s) 24
BstPAI GACNNNNGTC 1 cut(s) 183
BstSLI GKGCMC 1 cut(s) 166
BstV1I GCAGC 1 cut(s) 507
BstV2I GAAGAC 1 cut(s) 793
BstX2I RGATCY 2 cut(s) 575, 805
BstYI RGATCY 2 cut(s) 575, 805
BstZI CGGCCG 1 cut(s) 433
BsuRI GGCC 6 cut(s) 171, 267, 291, 435, 671, 796
BtgI CCRYGG 1 cut(s) 610
BtgZI GCGATG 1 cut(s) 882
BtsCI GGATG 2 cut(s) 410, 750
BtsIMutI CAGTG 1 cut(s) 906
Cac8I GCNNGC 1 cut(s) 22
CfoI GCGC 1 cut(s) 685
Cfr10I RCCGGY 1 cut(s) 955
Cfr13I GGNCC 5 cut(s) 460, 670, 904, 922, 946
Csp6I GTAC 2 cut(s) 570, 640
CviAII CATG 3 cut(s) 21, 25, 731
CviQI GTAC 2 cut(s) 570, 640
DdeI CTNAG 2 cut(s) 44, 938
DinI GGCGCC 1 cut(s) 684
DpnI GATC 3 cut(s) 577, 807, 838
DpnII GATC 3 cut(s) 575, 805, 836
EaeI YGGCCR 4 cut(s) 169, 289, 433, 794
EagI CGGCCG 1 cut(s) 433
EciI GGCGGA 1 cut(s) 417
EclXI CGGCCG 1 cut(s) 433
Eco130I CCWWGG 2 cut(s) 487, 791
Eco31I GGTCTC 2 cut(s) 477, 683
Eco47I GGWCC 4 cut(s) 460, 904, 922, 946
Eco52I CGGCCG 1 cut(s) 433
EcoO109I RGGNCCY 1 cut(s) 922
EcoRII CCWGG 8 cut(s) 130, 514, 529, 693, 831, 849, 873, 924
EcoT14I CCWWGG 2 cut(s) 487, 791
EcoT22I ATGCAT 1 cut(s) 26
EgeI GGCGCC 1 cut(s) 684
EheI GGCGCC 1 cut(s) 684
ErhI CCWWGG 2 cut(s) 487, 791
FaeI CATG 3 cut(s) 24, 28, 734
FaiI YATR 9 cut(s) 22, 26, 117, 258, 282, 589, 668, 732, 894
FalI AAGNNNNNCTT 4 cut(s) 89, 121, 150, 182
FaqI GGGAC 6 cut(s) 171, 180, 473, 497, 890, 932
FatI CATG 3 cut(s) 20, 24, 730
FauI CCCGC 2 cut(s) 350, 691
Fnu4HI GCNGC 9 cut(s) 274, 277, 289, 301, 379, 433, 469, 493, 496
FokI GGATG 2 cut(s) 417, 737
Fsp4HI GCNGC 9 cut(s) 274, 277, 289, 301, 379, 433, 469, 493, 496
FspBI CTAG 1 cut(s) 973
GlaI GCGC 1 cut(s) 684
GluI GCNGC 9 cut(s) 274, 277, 289, 301, 379, 433, 469, 493, 496
GsaI CCCAGC 1 cut(s) 216
HaeII RGCGCY 1 cut(s) 686
HaeIII GGCC 6 cut(s) 171, 267, 291, 435, 671, 796
HapII CCGG 4 cut(s) 237, 457, 956, 962
HhaI GCGC 1 cut(s) 685
Hin1I GRCGYC 1 cut(s) 683
Hin1II CATG 3 cut(s) 24, 28, 734
Hin6I GCGC 1 cut(s) 683
HinP1I GCGC 1 cut(s) 683
HinfI GANTC 4 cut(s) 184, 193, 814, 896
HpaII CCGG 4 cut(s) 237, 457, 956, 962
HphI GGTGA 3 cut(s) 260, 458, 485
Hpy166II GTNNAC 2 cut(s) 113, 727
Hpy188I TCNGA 1 cut(s) 813
Hpy8I GTNNAC 2 cut(s) 113, 727
HpyAV CCTTC 2 cut(s) 152, 434
HpyCH4III ACNGT 1 cut(s) 710
HpyCH4V TGCA 3 cut(s) 24, 594, 624
HpyF10VI GCNNNNNNNGC 8 cut(s) 26, 71, 273, 285, 297, 375, 432, 501
HpyF3I CTNAG 2 cut(s) 44, 938
Hsp92I GRCGYC 1 cut(s) 683
Hsp92II CATG 3 cut(s) 24, 28, 734
HspAI GCGC 1 cut(s) 683
KasI GGCGCC 1 cut(s) 682
Kzo9I GATC 3 cut(s) 575, 805, 836
LmnI GCTCC 3 cut(s) 239, 664, 775
Lsp1109I GCAGC 1 cut(s) 507
LweI GCATC 1 cut(s) 859
MaeI CTAG 1 cut(s) 973
MaeIII GTNAC 1 cut(s) 221
MalI GATC 3 cut(s) 577, 807, 838
MboI GATC 3 cut(s) 575, 805, 836
MboII GAAGA 2 cut(s) 570, 798
MflI RGATCY 2 cut(s) 575, 805
MhlI GDGCHC 1 cut(s) 166
MlsI TGGCCA 2 cut(s) 171, 796
MluCI AATT 3 cut(s) 564, 600, 604
MluNI TGGCCA 2 cut(s) 171, 796
Mly113I GGCGCC 1 cut(s) 683
MlyI GAGTC 3 cut(s) 193, 202, 808
MmeI TCCRAC 2 cut(s) 541, 836
Mox20I TGGCCA 2 cut(s) 171, 796
Mph1103I ATGCAT 1 cut(s) 26
MscI TGGCCA 2 cut(s) 171, 796
MseI TTAA 1 cut(s) 603
MslI CAYNNNNRTG 1 cut(s) 13
Msp20I TGGCCA 2 cut(s) 171, 796
MspI CCGG 4 cut(s) 237, 457, 956, 962
MvaI CCWGG 8 cut(s) 132, 516, 531, 695, 833, 851, 875, 926
MwoI GCNNNNNNNGC 8 cut(s) 26, 71, 273, 285, 297, 375, 432, 501
NarI GGCGCC 1 cut(s) 683
NciI CCSGG 2 cut(s) 458, 963
NdeII GATC 3 cut(s) 575, 805, 836
NlaIII CATG 3 cut(s) 24, 28, 734
NlaIV GGNNCC 9 cut(s) 241, 461, 672, 684, 855, 885, 906, 948, 960
NmeAIII GCCGAG 2 cut(s) 293, 461
NmuCI GTSAC 1 cut(s) 221
NsiI ATGCAT 1 cut(s) 26
NspI RCATGY 1 cut(s) 24
PaeI GCATGC 1 cut(s) 24
PasI CCCWGGG 1 cut(s) 832
PfeI GAWTC 1 cut(s) 896
PflMI CCANNNNNTGG 1 cut(s) 736
PkrI GCNGC 9 cut(s) 275, 278, 290, 302, 380, 434, 470, 494, 497
PleI GAGTC 3 cut(s) 192, 201, 808
PluTI GGCGCC 1 cut(s) 686
PpsI GAGTC 3 cut(s) 192, 201, 808
PpuMI RGGWCCY 1 cut(s) 922
PshAI GACNNNNGTC 1 cut(s) 183
PshBI ATTAAT 1 cut(s) 603
Psp5II RGGWCCY 1 cut(s) 922
Psp6I CCWGG 8 cut(s) 130, 514, 529, 693, 831, 849, 873, 924
PspFI CCCAGC 1 cut(s) 212
PspGI CCWGG 8 cut(s) 130, 514, 529, 693, 831, 849, 873, 924
PspN4I GGNNCC 9 cut(s) 241, 461, 672, 684, 855, 885, 906, 948, 960
PspPI GGNCC 5 cut(s) 460, 670, 904, 922, 946
PspPPI RGGWCCY 1 cut(s) 922
PsuI RGATCY 2 cut(s) 575, 805
RsaI GTAC 2 cut(s) 571, 641
RsaNI GTAC 2 cut(s) 570, 640
RseI CAYNNNNRTG 1 cut(s) 13
SaqAI TTAA 1 cut(s) 603
SatI GCNGC 9 cut(s) 274, 277, 289, 301, 379, 433, 469, 493, 496
Sau3AI GATC 3 cut(s) 575, 805, 836
Sau96I GGNCC 5 cut(s) 460, 670, 904, 922, 946
ScaI AGTACT 1 cut(s) 571
SchI GAGTC 3 cut(s) 193, 202, 808
SduI GDGCHC 1 cut(s) 166
SfaNI GCATC 1 cut(s) 859
SfoI GGCGCC 1 cut(s) 684
SinI GGWCC 4 cut(s) 460, 904, 922, 946
SmiMI CAYNNNNRTG 1 cut(s) 13
SphI GCATGC 1 cut(s) 24
Sse9I AATT 3 cut(s) 564, 600, 604
SspDI GGCGCC 1 cut(s) 682
SspMI CTAG 1 cut(s) 973
StyI CCWWGG 2 cut(s) 487, 791
TaaI ACNGT 1 cut(s) 710
TaqI TCGA 1 cut(s) 645
TasI AATT 3 cut(s) 564, 600, 604
TatI WGTACW 2 cut(s) 569, 639
TauI GCSGC 8 cut(s) 276, 279, 291, 303, 381, 435, 471, 495
TfiI GAWTC 1 cut(s) 896
Tru1I TTAA 1 cut(s) 603
Tru9I TTAA 1 cut(s) 603
TscAI CASTG 1 cut(s) 906
TseFI GTSAC 1 cut(s) 221
TseI GCWGC 1 cut(s) 495
Tsp45I GTSAC 1 cut(s) 221
TspDTI ATGAA 2 cut(s) 623, 747
TspGWI ACGGA 2 cut(s) 495, 762
TspRI CASTG 1 cut(s) 906
Van91I CCANNNNNTGG 1 cut(s) 736
VpaK11BI GGWCC 4 cut(s) 460, 904, 922, 946
VspI ATTAAT 1 cut(s) 603
XceI RCATGY 1 cut(s) 24
XspI CTAG 1 cut(s) 973
ZrmI AGTACT 1 cut(s) 571
Zsp2I ATGCAT 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.