RLG00000031547

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0016784
Physical Location & Seq
Reverse (-)
6062937 .. 6063974
1038 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031547

Sequence Viewer

Length: 1038 bp
ATGGCAACACCAAAATGGGCATGCATGGCTCTTTTGCTATTTCTTAGCTTGGGAGTTGGCTCTGCTGGTAGAGCCAAAGTGGTTGATAAACCACAAAAGTTTGTCTTGGGTGGACATATTGGTTTGAAACCAGGCTTCCACATTGGAGGTATCATTGAAGGGGCACTTGGCCACAATGACAAGAGTCCCCCCACTCCACCACCCAGCCCAAGTGACACCTCTGTCGCCGGAGCCAGAGGTGATGGTTATGGTGGAGGCCGAGGCGGCGGCTATGGAAGCGGCCAAGTGGGCGGCATTATTGGGGGAGGAGGAGGAGGTGGAGGCGGTAGTGTTGGTGGTGGGTTTGGCGGGGGTGGAGGCGGCTTTGGTAGAGGTGGAGGTGGCGGTGGCGGCCGAGAAGGTTGTGGTGATTGCGGGGACCAAAGTGGCGGTGATGATGGAGACCAAGGCGGCAGCCCAAGCATTGTCGTCCCAGGTTTTACCATTCCTGGCTTTGACATTGGTGGTGTTATCGGCGGTGGAATTAGTACTGGATCTTCTGGTCTATACTGCACACCAATTAATTGCCGTGGTAATGACTGCAAAGGAGTTCATTTGTACTTCGATAACTCTAATGCTCCCAATATGTCCCCCATTTTGGCGCCAGAGACCCTGGTGGGAAGCAACGGTCAAAAACAAAATATGAACCATGAAGTGGAGGATAAACACAGTATGGATACCCTGGCTTCAGAACCAAGCACTAGCCTCGACACGAAACCAAGGTCACCAGACCCAATGGATGCCAGTACACCCCCAATCTATGTCCCTGTACCAGTCCCAGACCCAAACAATGCCCCGTCATCACGGGGGAGACCTCGGCCACCAATCGATCCTCCGACACCACCAAGCAACACCCTGGGATCAAGCAATGCCCTGGCACCAGAACCAAGCGATGCCCCGGAACTGGAACCAAGCTATGATTCCGTGGTCCCAAAACCAAGTGAGGACCTGGAAGTAGAACTAAGCGTGGTCCCAAAACCGGCACCGGGATTAGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

346

Amino Acids

33.97

Weight (kDa)

4.81

Isoelectric Point (pI)

58.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016784)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g09400 FvH4_3g09400
prunus_persica Prupe.4G045400_v2.0.a1
pyrus_communis pycom05g29190
rosa_laevigata RLG00000031547
rosa_multiflora Rmu_co8070730.1_g000001 Rmu_sc0001626.1_g000021 Rmu_sc0024443.1_g000001
rosa_roxburghii Rroxscaffold_1G00068280
rosa_rugosa Rorug04G0434300
rosa_samantha Rh5AG062200 Rh5BG058900 Rh5CG069400 Rh5DG058300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 221
AccB1I GGYRCC 3 cut(s) 640, 916, 1021
AccB7I CCANNNNNTGG 1 cut(s) 694
AclWI GGATC 3 cut(s) 541, 863, 907
AcoI YGGCCR 4 cut(s) 169, 280, 391, 857
AcuI CTGAAG 1 cut(s) 711
AcyI GRCGYC 1 cut(s) 641
AfaI GTAC 4 cut(s) 529, 599, 787, 810
AfiI CCNNNNNNNGG 5 cut(s) 637, 694, 943, 1018, 1025
AgsI TTSAA 2 cut(s) 127, 158
AjnI CCWGG 8 cut(s) 130, 472, 487, 651, 720, 894, 912, 987
AjuI GAANNNNNNNTTGG 4 cut(s) 150, 182, 943, 975
AluBI AGCT 2 cut(s) 48, 954
AluI AGCT 2 cut(s) 48, 954
Alw26I GTCTC 3 cut(s) 435, 641, 844
AlwI GGATC 3 cut(s) 541, 863, 907
AoxI GGCC 5 cut(s) 169, 256, 280, 391, 857
ApeKI GCWGC 1 cut(s) 453
ArsI GACNNNNNNTTYG 2 cut(s) 746, 778
AseI ATTAAT 1 cut(s) 561
AspLEI GCGC 1 cut(s) 643
AspS9I GGNCC 4 cut(s) 418, 967, 985, 1009
AsuC2I CCSGG 2 cut(s) 938, 1026
AsuHPI GGTGA 4 cut(s) 251, 419, 443, 756
AvaII GGWCC 4 cut(s) 418, 967, 985, 1009
BaeGI GKGCMC 1 cut(s) 166
BalI TGGCCA 1 cut(s) 171
BanI GGYRCC 3 cut(s) 640, 916, 1021
BarI GAAGNNNNNNTAC 2 cut(s) 520, 552
BbvI GCAGC 1 cut(s) 465
BccI CCATC 2 cut(s) 236, 431
BceAI ACGGC 1 cut(s) 552
BcgI CGANNNNNNTGC 2 cut(s) 727, 761
BciT130I CCWGG 8 cut(s) 132, 474, 489, 653, 722, 896, 914, 989
BciVI GTATCC 1 cut(s) 709
BcnI CCSGG 2 cut(s) 938, 1026
BcoDI GTCTC 3 cut(s) 435, 641, 844
BfaI CTAG 2 cut(s) 741, 1036
BfoI RGCGCY 1 cut(s) 644
BfuI GTATCC 1 cut(s) 709
BglI GCCNNNNNGGC 2 cut(s) 264, 288
BisI GCNGC 8 cut(s) 265, 268, 280, 292, 361, 391, 451, 454
BlsI GCNGC 8 cut(s) 266, 269, 281, 293, 362, 392, 452, 455
BmcAI AGTACT 1 cut(s) 529
Bme18I GGWCC 4 cut(s) 418, 967, 985, 1009
BmgT120I GGNCC 4 cut(s) 418, 967, 985, 1009
BmiI GGNNCC 8 cut(s) 232, 419, 642, 918, 948, 969, 1011, 1023
BmsI GCATC 2 cut(s) 769, 922
BoxI GACNNNNGTC 1 cut(s) 183
BpuMI CCSGG 2 cut(s) 938, 1026
Bsa29I ATCGAT 1 cut(s) 867
BsaHI GRCGYC 1 cut(s) 641
BsaI GGTCTC 3 cut(s) 435, 641, 844
Bsc4I CCNNNNNNNGG 5 cut(s) 637, 694, 943, 1018, 1025
Bse118I RCCGGY 1 cut(s) 1018
Bse1I ACTGG 4 cut(s) 535, 783, 812, 948
Bse3DI GCAATG 1 cut(s) 913
BseBI CCWGG 8 cut(s) 132, 474, 489, 653, 722, 896, 914, 989
BseCI ATCGAT 1 cut(s) 867
BseGI GGATG 1 cut(s) 784
BseLI CCNNNNNNNGG 5 cut(s) 637, 694, 943, 1018, 1025
BseMI GCAATG 1 cut(s) 913
BseNI ACTGG 4 cut(s) 535, 783, 812, 948
BseRI GAGGAG 3 cut(s) 321, 324, 327
BseSI GKGCMC 1 cut(s) 166
BseX3I CGGCCG 1 cut(s) 391
BseXI GCAGC 1 cut(s) 465
BseYI CCCAGC 1 cut(s) 203
BsgI GTGCAG 1 cut(s) 535
Bsh1285I CGRYCG 1 cut(s) 394
BshFI GGCC 5 cut(s) 171, 258, 282, 393, 859
BshNI GGYRCC 3 cut(s) 640, 916, 1021
BshVI ATCGAT 1 cut(s) 867
BsiEI CGRYCG 1 cut(s) 394
BsiSI CCGG 4 cut(s) 228, 938, 1019, 1025
BslFI GGGAC 8 cut(s) 171, 431, 455, 613, 788, 800, 953, 995
BslI CCNNNNNNNGG 5 cut(s) 637, 694, 943, 1018, 1025
BsmAI GTCTC 3 cut(s) 435, 641, 844
BsmFI GGGAC 8 cut(s) 171, 431, 455, 613, 788, 800, 953, 995
BsnI GGCC 5 cut(s) 171, 258, 282, 393, 859
Bso31I GGTCTC 3 cut(s) 435, 641, 844
Bsp1286I GDGCHC 1 cut(s) 166
Bsp143I GATC 3 cut(s) 533, 868, 899
BspANI GGCC 5 cut(s) 171, 258, 282, 393, 859
BspDI ATCGAT 1 cut(s) 867
BspLI GGNNCC 8 cut(s) 232, 419, 642, 918, 948, 969, 1011, 1023
BspPI GGATC 3 cut(s) 541, 863, 907
BspT107I GGYRCC 3 cut(s) 640, 916, 1021
BspTNI GGTCTC 3 cut(s) 435, 641, 844
BsrDI GCAATG 1 cut(s) 913
BsrFI RCCGGY 1 cut(s) 1018
BsrI ACTGG 4 cut(s) 535, 783, 812, 948
BssAI RCCGGY 1 cut(s) 1018
BssMI GATC 3 cut(s) 533, 868, 899
BssNI GRCGYC 1 cut(s) 641
BssT1I CCWWGG 2 cut(s) 445, 758
Bst2UI CCWGG 8 cut(s) 132, 474, 489, 653, 722, 896, 914, 989
Bst4CI ACNGT 2 cut(s) 668, 710
BstACI GRCGYC 1 cut(s) 641
BstC8I GCNNGC 1 cut(s) 22
BstDEI CTNAG 2 cut(s) 44, 1001
BstDSI CCRYGG 2 cut(s) 568, 963
BstEII GGTNACC 1 cut(s) 762
BstF5I GGATG 1 cut(s) 784
BstH2I RGCGCY 1 cut(s) 644
BstHHI GCGC 1 cut(s) 643
BstKTI GATC 3 cut(s) 536, 871, 902
BstMAI GTCTC 3 cut(s) 435, 641, 844
BstMBI GATC 3 cut(s) 533, 868, 899
BstMCI CGRYCG 1 cut(s) 394
BstMWI GCNNNNNNNGC 7 cut(s) 26, 71, 264, 276, 288, 390, 459
BstNI CCWGG 8 cut(s) 132, 474, 489, 653, 722, 896, 914, 989
BstNSI RCATGY 1 cut(s) 24
BstPAI GACNNNNGTC 1 cut(s) 183
BstPI GGTNACC 1 cut(s) 762
BstSLI GKGCMC 1 cut(s) 166
BstV1I GCAGC 1 cut(s) 465
BstX2I RGATCY 1 cut(s) 533
BstYI RGATCY 1 cut(s) 533
BstZI CGGCCG 1 cut(s) 391
Bsu15I ATCGAT 1 cut(s) 867
BsuI GTATCC 1 cut(s) 709
BsuRI GGCC 5 cut(s) 171, 258, 282, 393, 859
BsuTUI ATCGAT 1 cut(s) 867
BtgI CCRYGG 2 cut(s) 568, 963
BtgZI GCGATG 1 cut(s) 945
BtsCI GGATG 1 cut(s) 784
Cac8I GCNNGC 1 cut(s) 22
CfoI GCGC 1 cut(s) 643
Cfr10I RCCGGY 1 cut(s) 1018
Cfr13I GGNCC 4 cut(s) 418, 967, 985, 1009
ClaI ATCGAT 1 cut(s) 867
Csp6I GTAC 4 cut(s) 528, 598, 786, 809
CviAII CATG 3 cut(s) 21, 25, 689
CviQI GTAC 4 cut(s) 528, 598, 786, 809
DdeI CTNAG 2 cut(s) 44, 1001
DinI GGCGCC 1 cut(s) 642
DpnI GATC 3 cut(s) 535, 870, 901
DpnII GATC 3 cut(s) 533, 868, 899
DrdI GACNNNNNNGTC 1 cut(s) 221
DseDI GACNNNNNNGTC 1 cut(s) 221
EaeI YGGCCR 4 cut(s) 169, 280, 391, 857
EagI CGGCCG 1 cut(s) 391
EclXI CGGCCG 1 cut(s) 391
Eco130I CCWWGG 2 cut(s) 445, 758
Eco31I GGTCTC 3 cut(s) 435, 641, 844
Eco47I GGWCC 4 cut(s) 418, 967, 985, 1009
Eco52I CGGCCG 1 cut(s) 391
Eco57I CTGAAG 1 cut(s) 711
Eco91I GGTNACC 1 cut(s) 762
EcoO109I RGGNCCY 1 cut(s) 985
EcoO65I GGTNACC 1 cut(s) 762
EcoRII CCWGG 8 cut(s) 130, 472, 487, 651, 720, 894, 912, 987
EcoT14I CCWWGG 2 cut(s) 445, 758
EcoT22I ATGCAT 1 cut(s) 26
EgeI GGCGCC 1 cut(s) 642
EheI GGCGCC 1 cut(s) 642
ErhI CCWWGG 2 cut(s) 445, 758
FaeI CATG 3 cut(s) 24, 28, 692
FalI AAGNNNNNCTT 4 cut(s) 89, 121, 150, 182
FaqI GGGAC 8 cut(s) 171, 431, 455, 613, 788, 800, 953, 995
FatI CATG 3 cut(s) 20, 24, 688
FauI CCCGC 2 cut(s) 341, 407
Fnu4HI GCNGC 8 cut(s) 265, 268, 280, 292, 361, 391, 451, 454
FokI GGATG 1 cut(s) 791
Fsp4HI GCNGC 8 cut(s) 265, 268, 280, 292, 361, 391, 451, 454
FspBI CTAG 2 cut(s) 741, 1036
GlaI GCGC 1 cut(s) 642
GluI GCNGC 8 cut(s) 265, 268, 280, 292, 361, 391, 451, 454
GsaI CCCAGC 1 cut(s) 207
HaeII RGCGCY 1 cut(s) 644
HaeIII GGCC 5 cut(s) 171, 258, 282, 393, 859
HapII CCGG 4 cut(s) 228, 938, 1019, 1025
HhaI GCGC 1 cut(s) 643
Hin1I GRCGYC 1 cut(s) 641
Hin1II CATG 3 cut(s) 24, 28, 692
Hin6I GCGC 1 cut(s) 641
HinP1I GCGC 1 cut(s) 641
HinfI GANTC 2 cut(s) 184, 959
HpaII CCGG 4 cut(s) 228, 938, 1019, 1025
HphI GGTGA 4 cut(s) 251, 419, 443, 756
Hpy166II GTNNAC 2 cut(s) 113, 788
Hpy188I TCNGA 2 cut(s) 730, 876
Hpy8I GTNNAC 2 cut(s) 113, 788
HpyAV CCTTC 2 cut(s) 152, 392
HpyCH4III ACNGT 2 cut(s) 668, 710
HpyCH4V TGCA 3 cut(s) 24, 552, 582
HpyF10VI GCNNNNNNNGC 7 cut(s) 26, 71, 264, 276, 288, 390, 459
HpyF3I CTNAG 2 cut(s) 44, 1001
Hsp92I GRCGYC 1 cut(s) 641
Hsp92II CATG 3 cut(s) 24, 28, 692
HspAI GCGC 1 cut(s) 641
KasI GGCGCC 1 cut(s) 640
Kzo9I GATC 3 cut(s) 533, 868, 899
LmnI GCTCC 2 cut(s) 230, 622
Lsp1109I GCAGC 1 cut(s) 465
LweI GCATC 2 cut(s) 769, 922
MaeI CTAG 2 cut(s) 741, 1036
MaeIII GTNAC 2 cut(s) 212, 762
MalI GATC 3 cut(s) 535, 870, 901
MboI GATC 3 cut(s) 533, 868, 899
MboII GAAGA 1 cut(s) 528
MflI RGATCY 1 cut(s) 533
MhlI GDGCHC 1 cut(s) 166
MlsI TGGCCA 1 cut(s) 171
MluCI AATT 3 cut(s) 522, 558, 562
MluNI TGGCCA 1 cut(s) 171
Mly113I GGCGCC 1 cut(s) 641
MlyI GAGTC 1 cut(s) 193
MmeI TCCRAC 1 cut(s) 899
Mox20I TGGCCA 1 cut(s) 171
Mph1103I ATGCAT 1 cut(s) 26
MscI TGGCCA 1 cut(s) 171
MseI TTAA 1 cut(s) 561
MslI CAYNNNNRTG 1 cut(s) 13
Msp20I TGGCCA 1 cut(s) 171
MspI CCGG 4 cut(s) 228, 938, 1019, 1025
MvaI CCWGG 8 cut(s) 132, 474, 489, 653, 722, 896, 914, 989
MwoI GCNNNNNNNGC 7 cut(s) 26, 71, 264, 276, 288, 390, 459
NarI GGCGCC 1 cut(s) 641
NciI CCSGG 2 cut(s) 938, 1026
NdeII GATC 3 cut(s) 533, 868, 899
NlaIII CATG 3 cut(s) 24, 28, 692
NlaIV GGNNCC 8 cut(s) 232, 419, 642, 918, 948, 969, 1011, 1023
NmeAIII GCCGAG 3 cut(s) 284, 419, 835
NmuCI GTSAC 2 cut(s) 212, 762
NsiI ATGCAT 1 cut(s) 26
NspI RCATGY 1 cut(s) 24
PaeI GCATGC 1 cut(s) 24
PasI CCCWGGG 1 cut(s) 895
PfeI GAWTC 1 cut(s) 959
PflMI CCANNNNNTGG 1 cut(s) 694
PkrI GCNGC 8 cut(s) 266, 269, 281, 293, 362, 392, 452, 455
PleI GAGTC 1 cut(s) 192
PluTI GGCGCC 1 cut(s) 644
PpsI GAGTC 1 cut(s) 192
PpuMI RGGWCCY 1 cut(s) 985
PshAI GACNNNNGTC 1 cut(s) 183
PshBI ATTAAT 1 cut(s) 561
Psp5II RGGWCCY 1 cut(s) 985
Psp6I CCWGG 8 cut(s) 130, 472, 487, 651, 720, 894, 912, 987
PspEI GGTNACC 1 cut(s) 762
PspFI CCCAGC 1 cut(s) 203
PspGI CCWGG 8 cut(s) 130, 472, 487, 651, 720, 894, 912, 987
PspN4I GGNNCC 8 cut(s) 232, 419, 642, 918, 948, 969, 1011, 1023
PspPI GGNCC 4 cut(s) 418, 967, 985, 1009
PspPPI RGGWCCY 1 cut(s) 985
PsuI RGATCY 1 cut(s) 533
RsaI GTAC 4 cut(s) 529, 599, 787, 810
RsaNI GTAC 4 cut(s) 528, 598, 786, 809
RseI CAYNNNNRTG 1 cut(s) 13
SaqAI TTAA 1 cut(s) 561
SatI GCNGC 8 cut(s) 265, 268, 280, 292, 361, 391, 451, 454
Sau3AI GATC 3 cut(s) 533, 868, 899
Sau96I GGNCC 4 cut(s) 418, 967, 985, 1009
ScaI AGTACT 1 cut(s) 529
SchI GAGTC 1 cut(s) 193
SduI GDGCHC 1 cut(s) 166
SfaNI GCATC 2 cut(s) 769, 922
SfoI GGCGCC 1 cut(s) 642
SinI GGWCC 4 cut(s) 418, 967, 985, 1009
SmiMI CAYNNNNRTG 1 cut(s) 13
SphI GCATGC 1 cut(s) 24
Sse9I AATT 3 cut(s) 522, 558, 562
SspDI GGCGCC 1 cut(s) 640
SspMI CTAG 2 cut(s) 741, 1036
StyI CCWWGG 2 cut(s) 445, 758
TaaI ACNGT 2 cut(s) 668, 710
TaqI TCGA 3 cut(s) 603, 747, 867
TasI AATT 3 cut(s) 522, 558, 562
TatI WGTACW 3 cut(s) 527, 597, 785
TauI GCSGC 7 cut(s) 267, 270, 282, 294, 363, 393, 453
TfiI GAWTC 1 cut(s) 959
Tru1I TTAA 1 cut(s) 561
Tru9I TTAA 1 cut(s) 561
TseFI GTSAC 2 cut(s) 212, 762
TseI GCWGC 1 cut(s) 453
Tsp45I GTSAC 2 cut(s) 212, 762
TspDTI ATGAA 3 cut(s) 581, 698, 705
TspGWI ACGGA 1 cut(s) 952
Van91I CCANNNNNTGG 1 cut(s) 694
VpaK11BI GGWCC 4 cut(s) 418, 967, 985, 1009
VspI ATTAAT 1 cut(s) 561
XceI RCATGY 1 cut(s) 24
XspI CTAG 2 cut(s) 741, 1036
ZrmI AGTACT 1 cut(s) 529
Zsp2I ATGCAT 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.