Prupe.4G045400_v2.0.a1

glycine-rich cell wall structural protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Reverse (-)
2169179 .. 2170060
882 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G045400.1

Sequence Viewer

Length: 882 bp
ATGGCAACACCAAAATGGGCTTCCATAGCCTACTTGATATTGCTTAGCTGGGGAGTTACCTCTGCTCTTAGGGTTATTACTGGCAAGGAAAAAGAAATGGTTGATGAACCAGAGAAGTTTGTCTTAGGTGGACAAATTGGAGGAGGGCTTGGTGGACAGATTGGAGGAGGACTTGGTGGAGGTATTATTGGAGGTAGTATTAGTTTCGGTCCAGGTTTTGGTATTGGAGGTAGTATTGAAGGTGGGATTGGCAATCTAGGTGGTGGTAGTAGGGAAGGTGAGGGTAACGGCGGTTGCCAAGGTCATGGTGCTTGTAGTGGCCAAGGTGGTGGCCTAGGTGGTGGTATTGGCGGTGGCCAAGGTGGTGGTACTGATGGTGGCCAAGGTGGTGGTATTGGCGGTGGACTAGGTGGTGGTATAGGCGGTGGCCTAGGTGGTGGTATTGGTGGTGGTGGAGGCGGCGGTAATTGCGGCAGCCAAGGTGGTGGTGGTGGCAGTGGCAATGGTGGAGGCGGTGGTCCAGGCTTTGTCATTCCAGGTTATGGAACTCCAGGCTATGGAATTGGTGGTACTAATGGCGGCCAAATTGGTTCTGGTCTATATTGCACACCAATTCATTGCCCTGCTGCTACCTGCAAAGGAGTTCGTTTGTACTTTCAACATGACGACCAGTCCATGGATGATACCAATGTCCACAATAACCACCTCAAAGTCGACCATCAGCCCATGGAGGGAAGAAACAGCCATGGAGAAAATGGCAACCATGTCAATGAGATTACACATGAAAAATGGAAGATGCCCCCAGATGAAACCAGCAGCAATGCTGAAGGTGAAGGGAAACGAGATCGCAGTATGGATGCCATGGCCCCAGCATCAGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

294

Amino Acids

27.94

Weight (kDa)

5.29

Isoelectric Point (pI)

36.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0016784)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 641
AccB7I CCANNNNNTGG 4 cut(s) 218, 542, 557, 676
AccI GTMKAC 1 cut(s) 714
AciI CCGC 9 cut(s) 291, 351, 399, 423, 459, 462, 471, 513, 579
AcoI YGGCCR 4 cut(s) 319, 355, 379, 580
AcuI CTGAAG 1 cut(s) 846
AfaI GTAC 3 cut(s) 370, 571, 653
AfiI CCNNNNNNNGG 5 cut(s) 218, 542, 557, 676, 731
AgsI TTSAA 2 cut(s) 239, 659
AhdI GACNNNNNGTC 1 cut(s) 670
AjnI CCWGG 4 cut(s) 211, 520, 535, 550
AjuI GAANNNNNNNTTGG 3 cut(s) 36, 231, 263
AluBI AGCT 1 cut(s) 48
AluI AGCT 1 cut(s) 48
AoxI GGCC 7 cut(s) 319, 331, 355, 379, 427, 580, 864
ApeKI GCWGC 3 cut(s) 474, 626, 816
AspA2I CCTAGG 2 cut(s) 334, 430
AspS9I GGNCC 3 cut(s) 209, 518, 865
AsuHPI GGTGA 2 cut(s) 290, 842
AvaII GGWCC 2 cut(s) 209, 518
AvrII CCTAGG 2 cut(s) 334, 430
BaeI ACNNNNGTAYC 2 cut(s) 675, 708
BalI TGGCCA 3 cut(s) 321, 357, 381
BbvI GCAGC 3 cut(s) 486, 613, 828
BccI CCATC 2 cut(s) 368, 726
BceAI ACGGC 1 cut(s) 304
BciT130I CCWGG 4 cut(s) 213, 522, 537, 552
BfaI CTAG 5 cut(s) 257, 335, 407, 431, 880
BfuAI ACCTGC 1 cut(s) 641
BisI GCNGC 6 cut(s) 460, 472, 475, 580, 627, 817
BlnI CCTAGG 2 cut(s) 334, 430
BlpI GCTNAGC 1 cut(s) 44
BlsI GCNGC 6 cut(s) 461, 473, 476, 581, 628, 818
Bme1390I CCNGG 4 cut(s) 213, 522, 537, 552
Bme18I GGWCC 2 cut(s) 209, 518
BmeRI GACNNNNNGTC 1 cut(s) 670
BmgT120I GGNCC 3 cut(s) 209, 518, 865
BmiI GGNNCC 1 cut(s) 867
BmrFI CCNGG 4 cut(s) 213, 522, 537, 552
BmsI GCATC 2 cut(s) 786, 847
BpmI CTGGAG 1 cut(s) 534
Bpu1102I GCTNAGC 1 cut(s) 44
Bsc4I CCNNNNNNNGG 5 cut(s) 218, 542, 557, 676, 731
Bse1I ACTGG 2 cut(s) 85, 670
Bse3DI GCAATG 3 cut(s) 508, 616, 826
BseBI CCWGG 4 cut(s) 213, 522, 537, 552
BseGI GGATG 2 cut(s) 685, 862
BseLI CCNNNNNNNGG 5 cut(s) 218, 542, 557, 676, 731
BseMI GCAATG 3 cut(s) 508, 616, 826
BseNI ACTGG 2 cut(s) 85, 670
BseRI GAGGAG 2 cut(s) 156, 180
BseXI GCAGC 3 cut(s) 486, 613, 828
BseYI CCCAGC 2 cut(s) 48, 868
BshFI GGCC 7 cut(s) 321, 333, 357, 381, 429, 582, 866
BslI CCNNNNNNNGG 5 cut(s) 218, 542, 557, 676, 731
BsnI GGCC 7 cut(s) 321, 333, 357, 381, 429, 582, 866
Bsp143I GATC 1 cut(s) 844
Bsp1720I GCTNAGC 1 cut(s) 44
Bsp19I CCATGG 4 cut(s) 675, 726, 745, 861
BspACI CCGC 9 cut(s) 291, 351, 399, 423, 459, 462, 471, 513, 579
BspANI GGCC 7 cut(s) 321, 333, 357, 381, 429, 582, 866
BspLI GGNNCC 1 cut(s) 867
BspMI ACCTGC 1 cut(s) 641
BsrDI GCAATG 3 cut(s) 508, 616, 826
BsrI ACTGG 2 cut(s) 85, 670
BssMI GATC 1 cut(s) 844
Bst2UI CCWGG 4 cut(s) 213, 522, 537, 552
BstDEI CTNAG 3 cut(s) 44, 68, 124
BstDSI CCRYGG 4 cut(s) 675, 726, 745, 861
BstF5I GGATG 2 cut(s) 685, 862
BstKTI GATC 1 cut(s) 847
BstMBI GATC 1 cut(s) 844
BstMWI GCNNNNNNNGC 2 cut(s) 26, 468
BstNI CCWGG 4 cut(s) 213, 522, 537, 552
BstSCI CCNGG 4 cut(s) 211, 520, 535, 550
BstV1I GCAGC 3 cut(s) 486, 613, 828
BstXI CCANNNNNNTGG 5 cut(s) 305, 329, 365, 389, 485
BsuRI GGCC 7 cut(s) 321, 333, 357, 381, 429, 582, 866
BtgI CCRYGG 4 cut(s) 675, 726, 745, 861
BtsCI GGATG 2 cut(s) 685, 862
BtsI GCAGTG 1 cut(s) 502
BtsIMutI CAGTG 1 cut(s) 502
BveI ACCTGC 1 cut(s) 641
Cfr13I GGNCC 3 cut(s) 209, 518, 865
Csp6I GTAC 3 cut(s) 369, 570, 652
CspCI CAANNNNNGTGG 2 cut(s) 241, 276
CviAII CATG 8 cut(s) 305, 662, 676, 727, 746, 764, 782, 862
CviQI GTAC 3 cut(s) 369, 570, 652
DdeI CTNAG 3 cut(s) 44, 68, 124
DpnI GATC 1 cut(s) 846
DpnII GATC 1 cut(s) 844
DriI GACNNNNNGTC 1 cut(s) 670
EaeI YGGCCR 4 cut(s) 319, 355, 379, 580
Eam1105I GACNNNNNGTC 1 cut(s) 670
Eco47I GGWCC 2 cut(s) 209, 518
Eco57I CTGAAG 1 cut(s) 846
EcoRII CCWGG 4 cut(s) 211, 520, 535, 550
FaeI CATG 8 cut(s) 308, 665, 679, 730, 749, 767, 785, 865
FalI AAGNNNNNCTT 2 cut(s) 107, 139
FatI CATG 8 cut(s) 304, 661, 675, 726, 745, 763, 781, 861
FblI GTMKAC 1 cut(s) 714
Fnu4HI GCNGC 6 cut(s) 460, 472, 475, 580, 627, 817
FokI GGATG 2 cut(s) 692, 869
Fsp4HI GCNGC 6 cut(s) 460, 472, 475, 580, 627, 817
FspBI CTAG 5 cut(s) 257, 335, 407, 431, 880
GluI GCNGC 6 cut(s) 460, 472, 475, 580, 627, 817
GsaI CCCAGC 2 cut(s) 52, 872
GsuI CTGGAG 1 cut(s) 534
HaeIII GGCC 7 cut(s) 321, 333, 357, 381, 429, 582, 866
Hin1II CATG 8 cut(s) 308, 665, 679, 730, 749, 767, 785, 865
HincII GTYRAC 1 cut(s) 715
HindII GTYRAC 1 cut(s) 715
HphI GGTGA 2 cut(s) 290, 842
Hpy166II GTNNAC 5 cut(s) 131, 155, 404, 694, 715
Hpy188I TCNGA 1 cut(s) 877
Hpy8I GTNNAC 5 cut(s) 131, 155, 404, 694, 715
HpyAV CCTTC 4 cut(s) 233, 269, 821, 827
HpyCH4V TGCA 2 cut(s) 606, 636
HpyF10VI GCNNNNNNNGC 2 cut(s) 26, 468
HpyF3I CTNAG 3 cut(s) 44, 68, 124
Hsp92II CATG 8 cut(s) 308, 665, 679, 730, 749, 767, 785, 865
Kzo9I GATC 1 cut(s) 844
Lsp1109I GCAGC 3 cut(s) 486, 613, 828
LweI GCATC 2 cut(s) 786, 847
MaeI CTAG 5 cut(s) 257, 335, 407, 431, 880
MaeIII GTNAC 2 cut(s) 55, 284
MalI GATC 1 cut(s) 846
MboI GATC 1 cut(s) 844
MboII GAAGA 2 cut(s) 747, 805
MlsI TGGCCA 3 cut(s) 321, 357, 381
MluCI AATT 5 cut(s) 135, 466, 561, 585, 612
MluNI TGGCCA 3 cut(s) 321, 357, 381
Mox20I TGGCCA 3 cut(s) 321, 357, 381
MscI TGGCCA 3 cut(s) 321, 357, 381
MslI CAYNNNNRTG 2 cut(s) 13, 768
Msp20I TGGCCA 3 cut(s) 321, 357, 381
MspR9I CCNGG 4 cut(s) 213, 522, 537, 552
MvaI CCWGG 4 cut(s) 213, 522, 537, 552
MwoI GCNNNNNNNGC 2 cut(s) 26, 468
NcoI CCATGG 4 cut(s) 675, 726, 745, 861
NdeII GATC 1 cut(s) 844
NlaIII CATG 8 cut(s) 308, 665, 679, 730, 749, 767, 785, 865
NlaIV GGNNCC 1 cut(s) 867
PflMI CCANNNNNTGG 4 cut(s) 218, 542, 557, 676
PkrI GCNGC 6 cut(s) 461, 473, 476, 581, 628, 818
Psp6I CCWGG 4 cut(s) 211, 520, 535, 550
PspFI CCCAGC 2 cut(s) 48, 868
PspGI CCWGG 4 cut(s) 211, 520, 535, 550
PspN4I GGNNCC 1 cut(s) 867
PspPI GGNCC 3 cut(s) 209, 518, 865
RsaI GTAC 3 cut(s) 370, 571, 653
RsaNI GTAC 3 cut(s) 369, 570, 652
RseI CAYNNNNRTG 2 cut(s) 13, 768
SalI GTCGAC 1 cut(s) 713
SatI GCNGC 6 cut(s) 460, 472, 475, 580, 627, 817
Sau3AI GATC 1 cut(s) 844
Sau96I GGNCC 3 cut(s) 209, 518, 865
ScrFI CCNGG 4 cut(s) 213, 522, 537, 552
SfaNI GCATC 2 cut(s) 786, 847
SinI GGWCC 2 cut(s) 209, 518
SmiMI CAYNNNNRTG 2 cut(s) 13, 768
Sse9I AATT 5 cut(s) 135, 466, 561, 585, 612
SsiI CCGC 9 cut(s) 291, 351, 399, 423, 459, 462, 471, 513, 579
SspMI CTAG 5 cut(s) 257, 335, 407, 431, 880
StyD4I CCNGG 4 cut(s) 211, 520, 535, 550
TaqI TCGA 1 cut(s) 714
TaqII GACCGA 1 cut(s) 197
TasI AATT 5 cut(s) 135, 466, 561, 585, 612
TatI WGTACW 1 cut(s) 651
TauI GCSGC 3 cut(s) 462, 474, 582
TscAI CASTG 1 cut(s) 502
TseI GCWGC 3 cut(s) 474, 626, 816
TspDTI ATGAA 4 cut(s) 120, 605, 798, 822
TspRI CASTG 1 cut(s) 502
Van91I CCANNNNNTGG 4 cut(s) 218, 542, 557, 676
VpaK11BI GGWCC 2 cut(s) 209, 518
XcmI CCANNNNNNNNNTGG 3 cut(s) 485, 590, 752
XmaJI CCTAGG 2 cut(s) 334, 430
XmiI GTMKAC 1 cut(s) 714
XspI CTAG 5 cut(s) 257, 335, 407, 431, 880
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.