pycom05g29190

glycine-rich cell wall structural protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0016784
Physical Location & Seq
Forward (+)
29692920 .. 29693601
682 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g29190.2

Sequence Viewer

Length: 351 bp
ATGGCAACACCAAAAAAATGGGCATGCGTAGCTTATTTGCTATTACTTAGCTGGGGAGTGAGCTCTGCTCATAGGGCAATTAGTATTGGCAAGGATAAAGCTGTACTAGTTGACAGGCCAGATTCCCTCGGCTTCGGACAAATGGGAGGAGGCCTCGGGGGACAAATGGGAGGAGGCCTCGGCGGGCAAATGGGAGGAGGGCTCGGGGGACAAATGGGAGGTGACCTCGGTGGGCAAATGGGAGGTGGCCTCGGCGGGCAAATGGGAGGAGGTGTGGCGGCCAAGGCGGTGATGATGGTGGCATGGGCCATGATCAAGGCGGCCAAGGTTTCCCCATCCCTAGCTAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

11.26

Weight (kDa)

9.92

Isoelectric Point (pI)

31.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016784)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g09400 FvH4_3g09400
prunus_persica Prupe.4G045400_v2.0.a1
pyrus_communis pycom05g29190
rosa_laevigata RLG00000031547
rosa_multiflora Rmu_co8070730.1_g000001 Rmu_sc0001626.1_g000021 Rmu_sc0024443.1_g000001
rosa_roxburghii Rroxscaffold_1G00068280
rosa_rugosa Rorug04G0434300
rosa_samantha Rh5AG062200 Rh5BG058900 Rh5CG069400 Rh5DG058300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 183, 255, 278, 287, 320
AcoI YGGCCR 2 cut(s) 279, 321
AfaI GTAC 1 cut(s) 105
AhlI ACTAGT 1 cut(s) 106
AluBI AGCT 5 cut(s) 32, 51, 63, 101, 344
AluI AGCT 5 cut(s) 32, 51, 63, 101, 344
Alw21I GWGCWC 1 cut(s) 65
Ama87I CYCGRG 2 cut(s) 155, 203
AoxI GGCC 7 cut(s) 116, 151, 175, 247, 279, 306, 321
AspS9I GGNCC 1 cut(s) 306
AsuHPI GGTGA 2 cut(s) 233, 301
AvaI CYCGRG 2 cut(s) 155, 203
BanII GRGCYC 2 cut(s) 65, 204
Bbv12I GWGCWC 1 cut(s) 65
BccI CCATC 2 cut(s) 289, 343
BclI TGATCA 1 cut(s) 312
BcuI ACTAGT 1 cut(s) 106
BfaI CTAG 2 cut(s) 107, 341
BisI GCNGC 2 cut(s) 279, 321
BlsI GCNGC 2 cut(s) 280, 322
BmeT110I CYCGRG 2 cut(s) 155, 203
BmgT120I GGNCC 1 cut(s) 306
BsaJI CCNNGG 7 cut(s) 127, 154, 178, 226, 250, 282, 324
BsaXI ACNNNNNCTCC 2 cut(s) 258, 288
BseDI CCNNGG 7 cut(s) 127, 154, 178, 226, 250, 282, 324
BseGI GGATG 1 cut(s) 335
BseRI GAGGAG 4 cut(s) 162, 186, 210, 282
BseYI CCCAGC 1 cut(s) 51
BshFI GGCC 7 cut(s) 118, 153, 177, 249, 281, 308, 323
BsiHKAI GWGCWC 1 cut(s) 65
BsiHKCI CYCGRG 2 cut(s) 155, 203
BslFI GGGAC 2 cut(s) 174, 222
BsmFI GGGAC 2 cut(s) 174, 222
BsnI GGCC 7 cut(s) 118, 153, 177, 249, 281, 308, 323
BsoBI CYCGRG 2 cut(s) 155, 203
Bsp1286I GDGCHC 2 cut(s) 65, 204
Bsp143I GATC 1 cut(s) 312
BspACI CCGC 5 cut(s) 183, 255, 278, 287, 320
BspANI GGCC 7 cut(s) 118, 153, 177, 249, 281, 308, 323
BssECI CCNNGG 7 cut(s) 127, 154, 178, 226, 250, 282, 324
BssMI GATC 1 cut(s) 312
BssT1I CCWWGG 2 cut(s) 282, 324
BstC8I GCNNGC 3 cut(s) 25, 185, 257
BstDEI CTNAG 1 cut(s) 47
BstEII GGTNACC 1 cut(s) 221
BstF5I GGATG 1 cut(s) 335
BstKTI GATC 1 cut(s) 315
BstMBI GATC 1 cut(s) 312
BstMWI GCNNNNNNNGC 3 cut(s) 29, 74, 284
BstNSI RCATGY 1 cut(s) 27
BstPI GGTNACC 1 cut(s) 221
BstXI CCANNNNNNTGG 1 cut(s) 18
BsuRI GGCC 7 cut(s) 118, 153, 177, 249, 281, 308, 323
BtsCI GGATG 1 cut(s) 335
Cac8I GCNNGC 3 cut(s) 25, 185, 257
Cfr13I GGNCC 1 cut(s) 306
Csp6I GTAC 1 cut(s) 104
CviAII CATG 3 cut(s) 24, 303, 310
CviQI GTAC 1 cut(s) 104
DdeI CTNAG 1 cut(s) 47
DpnI GATC 1 cut(s) 314
DpnII GATC 1 cut(s) 312
EaeI YGGCCR 2 cut(s) 279, 321
Ecl136II GAGCTC 1 cut(s) 63
Eco130I CCWWGG 2 cut(s) 282, 324
Eco147I AGGCCT 2 cut(s) 153, 177
Eco24I GRGCYC 2 cut(s) 65, 204
Eco53kI GAGCTC 1 cut(s) 63
Eco88I CYCGRG 2 cut(s) 155, 203
Eco91I GGTNACC 1 cut(s) 221
EcoICRI GAGCTC 1 cut(s) 63
EcoO65I GGTNACC 1 cut(s) 221
EcoT14I CCWWGG 2 cut(s) 282, 324
EcoT38I GRGCYC 2 cut(s) 65, 204
ErhI CCWWGG 2 cut(s) 282, 324
FaeI CATG 3 cut(s) 27, 306, 313
FaiI YATR 4 cut(s) 25, 72, 304, 311
FaqI GGGAC 2 cut(s) 174, 222
FatI CATG 3 cut(s) 23, 302, 309
FauI CCCGC 2 cut(s) 176, 248
FbaI TGATCA 1 cut(s) 312
Fnu4HI GCNGC 2 cut(s) 279, 321
FokI GGATG 1 cut(s) 322
FriOI GRGCYC 2 cut(s) 65, 204
Fsp4HI GCNGC 2 cut(s) 279, 321
FspBI CTAG 2 cut(s) 107, 341
GluI GCNGC 2 cut(s) 279, 321
GsaI CCCAGC 1 cut(s) 55
HaeIII GGCC 7 cut(s) 118, 153, 177, 249, 281, 308, 323
Hin1II CATG 3 cut(s) 27, 306, 313
HincII GTYRAC 1 cut(s) 112
HindII GTYRAC 1 cut(s) 112
HinfI GANTC 1 cut(s) 122
HphI GGTGA 2 cut(s) 233, 301
Hpy166II GTNNAC 1 cut(s) 112
Hpy188I TCNGA 1 cut(s) 137
Hpy8I GTNNAC 1 cut(s) 112
HpyF10VI GCNNNNNNNGC 3 cut(s) 29, 74, 284
HpyF3I CTNAG 1 cut(s) 47
Hsp92II CATG 3 cut(s) 27, 306, 313
Ksp22I TGATCA 1 cut(s) 312
Kzo9I GATC 1 cut(s) 312
LpnPI CCDG 3 cut(s) 37, 100, 132
MaeI CTAG 2 cut(s) 107, 341
MaeIII GTNAC 1 cut(s) 221
MalI GATC 1 cut(s) 314
MboI GATC 1 cut(s) 312
MhlI GDGCHC 2 cut(s) 65, 204
MluCI AATT 1 cut(s) 78
MwoI GCNNNNNNNGC 3 cut(s) 29, 74, 284
NdeII GATC 1 cut(s) 312
NlaIII CATG 3 cut(s) 27, 306, 313
NmeAIII GCCGAG 3 cut(s) 108, 159, 231
NmuCI GTSAC 1 cut(s) 221
NspI RCATGY 1 cut(s) 27
PaeI GCATGC 1 cut(s) 27
PceI AGGCCT 2 cut(s) 153, 177
PfeI GAWTC 1 cut(s) 122
PkrI GCNGC 2 cut(s) 280, 322
Psp124BI GAGCTC 1 cut(s) 65
PspEI GGTNACC 1 cut(s) 221
PspFI CCCAGC 1 cut(s) 51
PspPI GGNCC 1 cut(s) 306
RsaI GTAC 1 cut(s) 105
RsaNI GTAC 1 cut(s) 104
SacI GAGCTC 1 cut(s) 65
SatI GCNGC 2 cut(s) 279, 321
Sau3AI GATC 1 cut(s) 312
Sau96I GGNCC 1 cut(s) 306
SduI GDGCHC 2 cut(s) 65, 204
SpeI ACTAGT 1 cut(s) 106
SphI GCATGC 1 cut(s) 27
Sse9I AATT 1 cut(s) 78
SseBI AGGCCT 2 cut(s) 153, 177
SsiI CCGC 5 cut(s) 183, 255, 278, 287, 320
SspMI CTAG 2 cut(s) 107, 341
SstI GAGCTC 1 cut(s) 65
StuI AGGCCT 2 cut(s) 153, 177
StyI CCWWGG 2 cut(s) 282, 324
TasI AATT 1 cut(s) 78
TatI WGTACW 1 cut(s) 103
TauI GCSGC 2 cut(s) 281, 323
TfiI GAWTC 1 cut(s) 122
TseFI GTSAC 1 cut(s) 221
Tsp45I GTSAC 1 cut(s) 221
XceI RCATGY 1 cut(s) 27
XspI CTAG 2 cut(s) 107, 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.