Rroxscaffold_1G00068280

glycine-rich cell wall structural protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0016784
Physical Location & Seq
Forward (+)
89512334 .. 89513472
1139 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00068280.1

Sequence Viewer

Length: 1104 bp
ATGGCAACACCAAAATGGGCATGCATTGCTCTTTTGCTATTTCTTAGCTTGGGAGTTGGCTCTGCTGGTAGAGCCAAAGTGGTTGATAATCCAGAAAAGTTTGTCTTGGGTGGACATATTGGTTTGAAACCAGGCTTCCACATTGGAGAGTCCCCCACTCCACCACCCAGCCCAAGTGACACCTCTGTCGCCGGAGCCAGAGGTGATGGTTATGGTGGAGGCCGAGGCGGCGGCTATGGAAGCGGCCAAGTAGGCGGCATTATTGGGGGAGGAGGAGGAGGAGGTGGAGGCGGTAGTGTTGGTGGTGGGTTTGGCGGGGGTGGAGGAGGAGGAGGCGGCTTTGGTAGAGGTAAAGGCGGAGGATGGGGTGGTGGAGGAGGTGGCGGTGGCGGTGGCGGCCGAGAAGGTGGTGATGATTGCGGGGACCAAAGTGGCGGTGATGACGGAGACGAAGGGGGCAGCCCAAGCATTGTCGTCCCAGGTTTTACCATTCCTGGCTTTGACATTGGTGGTGTTATCGGCGGTGGAATTAGTACTGGATCTTCTGGTCTATACTGCACACCAATTAATTGCCATGGTAATAACTGCAAAGGAGTTCATTTGTATTTCGATAACTCTAATGCTCCCAATATGTCCCCCATTTTGGCGCCAGAGACCCTGGCGGGAAGCAACGGTCAAAAACAAAATGTGAACCATGAAGTGGAGGATAAACACAGTGTGGACACCCTGGCTTCAGAACCAAGCTCTAGCCTCGACACGAAACCAAGGTCACCAGACCCAAAGGATGACAGTGCGCCCCCAATCTATGTCCCTGTACCAGTCCCAGACCCAAAGAATGCCCAGTCATCACGGGGGAGACCTCGGCCACCAATCGATCCTCCGACACCACCAAACAACGCCGTGCCATCATGGCGGAGACCTCGGCCACCAATCGATCCTCCGACACCACCAAGCAACACCCTGGGATCAAGCAATGCCCTGGCGCCAGAACCAAGCGATGCCCCGGAACTGGAACCAAGCTATGATTCCGTGGTCCCAAAACCAAGTGAGGACCTGGAAGTAGAACTAAGCGTGGTCCCAAAACCGGCACCGGGATTAGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

367

Amino Acids

35.96

Weight (kDa)

4.86

Isoelectric Point (pI)

63.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016784)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g09400 FvH4_3g09400
prunus_persica Prupe.4G045400_v2.0.a1
pyrus_communis pycom05g29190
rosa_laevigata RLG00000031547
rosa_multiflora Rmu_co8070730.1_g000001 Rmu_sc0001626.1_g000021 Rmu_sc0024443.1_g000001
rosa_roxburghii Rroxscaffold_1G00068280
rosa_rugosa Rorug04G0434300
rosa_samantha Rh5AG062200 Rh5BG058900 Rh5CG069400 Rh5DG058300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 185
AccB1I GGYRCC 3 cut(s) 646, 982, 1087
AccB7I CCANNNNNTGG 1 cut(s) 700
AclWI GGATC 4 cut(s) 547, 869, 929, 973
AcoI YGGCCR 4 cut(s) 244, 397, 863, 923
AcuI CTGAAG 1 cut(s) 717
AcyI GRCGYC 2 cut(s) 647, 983
AdeI CACNNNGTG 1 cut(s) 718
AfaI GTAC 2 cut(s) 535, 816
AfiI CCNNNNNNNGG 5 cut(s) 643, 700, 1009, 1084, 1091
AgsI TTSAA 1 cut(s) 127
AjnI CCWGG 8 cut(s) 130, 478, 493, 657, 726, 960, 978, 1053
AjuI GAANNNNNNNTTGG 2 cut(s) 1009, 1041
AluBI AGCT 3 cut(s) 48, 744, 1020
AluI AGCT 3 cut(s) 48, 744, 1020
Alw26I GTCTC 4 cut(s) 441, 647, 850, 910
AlwI GGATC 4 cut(s) 547, 869, 929, 973
AoxI GGCC 5 cut(s) 220, 244, 397, 863, 923
ApeKI GCWGC 1 cut(s) 459
ArsI GACNNNNNNTTYG 2 cut(s) 752, 784
AseI ATTAAT 1 cut(s) 567
AspLEI GCGC 3 cut(s) 649, 796, 985
AspS9I GGNCC 4 cut(s) 424, 1033, 1051, 1075
AsuC2I CCSGG 2 cut(s) 1004, 1092
AsuHPI GGTGA 4 cut(s) 215, 422, 449, 762
AvaII GGWCC 4 cut(s) 424, 1033, 1051, 1075
BanI GGYRCC 3 cut(s) 646, 982, 1087
BarI GAAGNNNNNNTAC 2 cut(s) 526, 558
BbvI GCAGC 1 cut(s) 471
BccI CCATC 3 cut(s) 200, 357, 913
BceAI ACGGC 1 cut(s) 884
BciT130I CCWGG 8 cut(s) 132, 480, 495, 659, 728, 962, 980, 1055
BcnI CCSGG 2 cut(s) 1004, 1092
BcoDI GTCTC 4 cut(s) 441, 647, 850, 910
BfaI CTAG 2 cut(s) 747, 1102
BfoI RGCGCY 2 cut(s) 650, 986
BglI GCCNNNNNGGC 3 cut(s) 228, 252, 910
BisI GCNGC 7 cut(s) 229, 232, 244, 256, 337, 397, 460
BlsI GCNGC 7 cut(s) 230, 233, 245, 257, 338, 398, 461
BmcAI AGTACT 1 cut(s) 535
Bme18I GGWCC 4 cut(s) 424, 1033, 1051, 1075
BmgT120I GGNCC 4 cut(s) 424, 1033, 1051, 1075
BmiI GGNNCC 8 cut(s) 196, 425, 648, 984, 1014, 1035, 1077, 1089
BmrI ACTGGG 1 cut(s) 835
BmsI GCATC 1 cut(s) 988
BmuI ACTGGG 1 cut(s) 835
BpuMI CCSGG 2 cut(s) 1004, 1092
Bsa29I ATCGAT 2 cut(s) 873, 933
BsaHI GRCGYC 2 cut(s) 647, 983
BsaI GGTCTC 3 cut(s) 647, 850, 910
Bsc4I CCNNNNNNNGG 5 cut(s) 643, 700, 1009, 1084, 1091
Bse118I RCCGGY 1 cut(s) 1084
Bse1I ACTGG 4 cut(s) 541, 818, 841, 1014
Bse3DI GCAATG 2 cut(s) 24, 979
BseBI CCWGG 8 cut(s) 132, 480, 495, 659, 728, 962, 980, 1055
BseCI ATCGAT 2 cut(s) 873, 933
BseGI GGATG 2 cut(s) 368, 790
BseLI CCNNNNNNNGG 5 cut(s) 643, 700, 1009, 1084, 1091
BseMI GCAATG 2 cut(s) 24, 979
BseNI ACTGG 4 cut(s) 541, 818, 841, 1014
BseRI GAGGAG 8 cut(s) 285, 288, 291, 294, 339, 342, 345, 390
BseX3I CGGCCG 1 cut(s) 397
BseXI GCAGC 1 cut(s) 471
BseYI CCCAGC 1 cut(s) 167
BsgI GTGCAG 1 cut(s) 541
Bsh1285I CGRYCG 1 cut(s) 400
BshFI GGCC 5 cut(s) 222, 246, 399, 865, 925
BshNI GGYRCC 3 cut(s) 646, 982, 1087
BshVI ATCGAT 2 cut(s) 873, 933
BsiEI CGRYCG 1 cut(s) 400
BsiSI CCGG 4 cut(s) 192, 1004, 1085, 1091
BslFI GGGAC 8 cut(s) 136, 437, 461, 619, 794, 806, 1019, 1061
BslI CCNNNNNNNGG 5 cut(s) 643, 700, 1009, 1084, 1091
BsmAI GTCTC 4 cut(s) 441, 647, 850, 910
BsmBI CGTCTC 1 cut(s) 441
BsmFI GGGAC 8 cut(s) 136, 437, 461, 619, 794, 806, 1019, 1061
BsmI GAATGC 1 cut(s) 841
BsnI GGCC 5 cut(s) 222, 246, 399, 865, 925
Bso31I GGTCTC 3 cut(s) 647, 850, 910
Bsp143I GATC 4 cut(s) 539, 874, 934, 965
Bsp19I CCATGG 1 cut(s) 574
BspANI GGCC 5 cut(s) 222, 246, 399, 865, 925
BspDI ATCGAT 2 cut(s) 873, 933
BspLI GGNNCC 8 cut(s) 196, 425, 648, 984, 1014, 1035, 1077, 1089
BspPI GGATC 4 cut(s) 547, 869, 929, 973
BspT107I GGYRCC 3 cut(s) 646, 982, 1087
BspTNI GGTCTC 3 cut(s) 647, 850, 910
BsrDI GCAATG 2 cut(s) 24, 979
BsrFI RCCGGY 1 cut(s) 1084
BsrI ACTGG 4 cut(s) 541, 818, 841, 1014
BssAI RCCGGY 1 cut(s) 1084
BssMI GATC 4 cut(s) 539, 874, 934, 965
BssNI GRCGYC 2 cut(s) 647, 983
BssT1I CCWWGG 2 cut(s) 574, 764
Bst2UI CCWGG 8 cut(s) 132, 480, 495, 659, 728, 962, 980, 1055
Bst4CI ACNGT 3 cut(s) 674, 716, 791
BstACI GRCGYC 2 cut(s) 647, 983
BstAPI GCANNNNNTGC 1 cut(s) 26
BstC8I GCNNGC 1 cut(s) 22
BstDEI CTNAG 2 cut(s) 44, 1067
BstDSI CCRYGG 2 cut(s) 574, 1029
BstEII GGTNACC 1 cut(s) 768
BstF5I GGATG 2 cut(s) 368, 790
BstH2I RGCGCY 2 cut(s) 650, 986
BstHHI GCGC 3 cut(s) 649, 796, 985
BstKTI GATC 4 cut(s) 542, 877, 937, 968
BstMAI GTCTC 4 cut(s) 441, 647, 850, 910
BstMBI GATC 4 cut(s) 539, 874, 934, 965
BstMCI CGRYCG 1 cut(s) 400
BstMWI GCNNNNNNNGC 8 cut(s) 26, 71, 228, 240, 252, 396, 465, 910
BstNI CCWGG 8 cut(s) 132, 480, 495, 659, 728, 962, 980, 1055
BstNSI RCATGY 1 cut(s) 24
BstPI GGTNACC 1 cut(s) 768
BstV1I GCAGC 1 cut(s) 471
BstX2I RGATCY 1 cut(s) 539
BstYI RGATCY 1 cut(s) 539
BstZI CGGCCG 1 cut(s) 397
Bsu15I ATCGAT 2 cut(s) 873, 933
BsuRI GGCC 5 cut(s) 222, 246, 399, 865, 925
BsuTUI ATCGAT 2 cut(s) 873, 933
BtgI CCRYGG 2 cut(s) 574, 1029
BtgZI GCGATG 1 cut(s) 1011
BtsCI GGATG 2 cut(s) 368, 790
BtsIMutI CAGTG 2 cut(s) 721, 796
Cac8I GCNNGC 1 cut(s) 22
CfoI GCGC 3 cut(s) 649, 796, 985
Cfr10I RCCGGY 1 cut(s) 1084
Cfr13I GGNCC 4 cut(s) 424, 1033, 1051, 1075
ClaI ATCGAT 2 cut(s) 873, 933
Csp6I GTAC 2 cut(s) 534, 815
CviAII CATG 4 cut(s) 21, 575, 695, 909
CviQI GTAC 2 cut(s) 534, 815
DdeI CTNAG 2 cut(s) 44, 1067
DinI GGCGCC 2 cut(s) 648, 984
DpnI GATC 4 cut(s) 541, 876, 936, 967
DpnII GATC 4 cut(s) 539, 874, 934, 965
DraIII CACNNNGTG 1 cut(s) 718
DrdI GACNNNNNNGTC 1 cut(s) 185
DseDI GACNNNNNNGTC 1 cut(s) 185
EaeI YGGCCR 4 cut(s) 244, 397, 863, 923
EagI CGGCCG 1 cut(s) 397
EciI GGCGGA 2 cut(s) 372, 928
EclXI CGGCCG 1 cut(s) 397
Eco130I CCWWGG 2 cut(s) 574, 764
Eco31I GGTCTC 3 cut(s) 647, 850, 910
Eco47I GGWCC 4 cut(s) 424, 1033, 1051, 1075
Eco52I CGGCCG 1 cut(s) 397
Eco57I CTGAAG 1 cut(s) 717
Eco91I GGTNACC 1 cut(s) 768
EcoO109I RGGNCCY 1 cut(s) 1051
EcoO65I GGTNACC 1 cut(s) 768
EcoRII CCWGG 8 cut(s) 130, 478, 493, 657, 726, 960, 978, 1053
EcoT14I CCWWGG 2 cut(s) 574, 764
EcoT22I ATGCAT 1 cut(s) 26
EgeI GGCGCC 2 cut(s) 648, 984
EheI GGCGCC 2 cut(s) 648, 984
ErhI CCWWGG 2 cut(s) 574, 764
Esp3I CGTCTC 1 cut(s) 441
FaeI CATG 4 cut(s) 24, 578, 698, 912
FalI AAGNNNNNCTT 2 cut(s) 89, 121
FaqI GGGAC 8 cut(s) 136, 437, 461, 619, 794, 806, 1019, 1061
FatI CATG 4 cut(s) 20, 574, 694, 908
FauI CCCGC 3 cut(s) 308, 413, 655
Fnu4HI GCNGC 7 cut(s) 229, 232, 244, 256, 337, 397, 460
FokI GGATG 2 cut(s) 375, 797
Fsp4HI GCNGC 7 cut(s) 229, 232, 244, 256, 337, 397, 460
FspBI CTAG 2 cut(s) 747, 1102
GlaI GCGC 3 cut(s) 648, 795, 984
GluI GCNGC 7 cut(s) 229, 232, 244, 256, 337, 397, 460
GsaI CCCAGC 1 cut(s) 171
HaeII RGCGCY 2 cut(s) 650, 986
HaeIII GGCC 5 cut(s) 222, 246, 399, 865, 925
HapII CCGG 4 cut(s) 192, 1004, 1085, 1091
HhaI GCGC 3 cut(s) 649, 796, 985
Hin1I GRCGYC 2 cut(s) 647, 983
Hin1II CATG 4 cut(s) 24, 578, 698, 912
Hin6I GCGC 3 cut(s) 647, 794, 983
HinP1I GCGC 3 cut(s) 647, 794, 983
HinfI GANTC 2 cut(s) 149, 1025
HpaII CCGG 4 cut(s) 192, 1004, 1085, 1091
HphI GGTGA 4 cut(s) 215, 422, 449, 762
Hpy166II GTNNAC 3 cut(s) 113, 691, 721
Hpy188I TCNGA 3 cut(s) 736, 882, 942
Hpy188III TCNNGA 1 cut(s) 92
Hpy8I GTNNAC 3 cut(s) 113, 691, 721
HpyAV CCTTC 2 cut(s) 398, 446
HpyCH4III ACNGT 3 cut(s) 674, 716, 791
HpyCH4V TGCA 3 cut(s) 24, 558, 588
HpyF10VI GCNNNNNNNGC 8 cut(s) 26, 71, 228, 240, 252, 396, 465, 910
HpyF3I CTNAG 2 cut(s) 44, 1067
Hsp92I GRCGYC 2 cut(s) 647, 983
Hsp92II CATG 4 cut(s) 24, 578, 698, 912
HspAI GCGC 3 cut(s) 647, 794, 983
KasI GGCGCC 2 cut(s) 646, 982
Kzo9I GATC 4 cut(s) 539, 874, 934, 965
LmnI GCTCC 2 cut(s) 194, 628
Lsp1109I GCAGC 1 cut(s) 471
LweI GCATC 1 cut(s) 988
MaeI CTAG 2 cut(s) 747, 1102
MaeIII GTNAC 2 cut(s) 176, 768
MalI GATC 4 cut(s) 541, 876, 936, 967
MboI GATC 4 cut(s) 539, 874, 934, 965
MboII GAAGA 1 cut(s) 534
MflI RGATCY 1 cut(s) 539
MluCI AATT 3 cut(s) 528, 564, 568
Mly113I GGCGCC 2 cut(s) 647, 983
MlyI GAGTC 1 cut(s) 158
MmeI TCCRAC 2 cut(s) 905, 965
Mph1103I ATGCAT 1 cut(s) 26
MseI TTAA 1 cut(s) 567
MslI CAYNNNNRTG 1 cut(s) 13
MspI CCGG 4 cut(s) 192, 1004, 1085, 1091
Mva1269I GAATGC 1 cut(s) 841
MvaI CCWGG 8 cut(s) 132, 480, 495, 659, 728, 962, 980, 1055
MwoI GCNNNNNNNGC 8 cut(s) 26, 71, 228, 240, 252, 396, 465, 910
NarI GGCGCC 2 cut(s) 647, 983
NciI CCSGG 2 cut(s) 1004, 1092
NcoI CCATGG 1 cut(s) 574
NdeII GATC 4 cut(s) 539, 874, 934, 965
NlaIII CATG 4 cut(s) 24, 578, 698, 912
NlaIV GGNNCC 8 cut(s) 196, 425, 648, 984, 1014, 1035, 1077, 1089
NmeAIII GCCGAG 4 cut(s) 248, 425, 841, 901
NmuCI GTSAC 2 cut(s) 176, 768
NsiI ATGCAT 1 cut(s) 26
NspI RCATGY 1 cut(s) 24
PaeI GCATGC 1 cut(s) 24
PasI CCCWGGG 1 cut(s) 961
PctI GAATGC 1 cut(s) 841
PfeI GAWTC 1 cut(s) 1025
PflMI CCANNNNNTGG 1 cut(s) 700
PkrI GCNGC 7 cut(s) 230, 233, 245, 257, 338, 398, 461
PleI GAGTC 1 cut(s) 157
PluTI GGCGCC 2 cut(s) 650, 986
PpsI GAGTC 1 cut(s) 157
PpuMI RGGWCCY 1 cut(s) 1051
PshBI ATTAAT 1 cut(s) 567
Psp5II RGGWCCY 1 cut(s) 1051
Psp6I CCWGG 8 cut(s) 130, 478, 493, 657, 726, 960, 978, 1053
PspEI GGTNACC 1 cut(s) 768
PspFI CCCAGC 1 cut(s) 167
PspGI CCWGG 8 cut(s) 130, 478, 493, 657, 726, 960, 978, 1053
PspN4I GGNNCC 8 cut(s) 196, 425, 648, 984, 1014, 1035, 1077, 1089
PspPI GGNCC 4 cut(s) 424, 1033, 1051, 1075
PspPPI RGGWCCY 1 cut(s) 1051
PsuI RGATCY 1 cut(s) 539
RsaI GTAC 2 cut(s) 535, 816
RsaNI GTAC 2 cut(s) 534, 815
RseI CAYNNNNRTG 1 cut(s) 13
SaqAI TTAA 1 cut(s) 567
SatI GCNGC 7 cut(s) 229, 232, 244, 256, 337, 397, 460
Sau3AI GATC 4 cut(s) 539, 874, 934, 965
Sau96I GGNCC 4 cut(s) 424, 1033, 1051, 1075
ScaI AGTACT 1 cut(s) 535
SchI GAGTC 1 cut(s) 158
SfaNI GCATC 1 cut(s) 988
SfoI GGCGCC 2 cut(s) 648, 984
SinI GGWCC 4 cut(s) 424, 1033, 1051, 1075
SmiMI CAYNNNNRTG 1 cut(s) 13
SphI GCATGC 1 cut(s) 24
Sse9I AATT 3 cut(s) 528, 564, 568
SspDI GGCGCC 2 cut(s) 646, 982
SspMI CTAG 2 cut(s) 747, 1102
StyI CCWWGG 2 cut(s) 574, 764
TaaI ACNGT 3 cut(s) 674, 716, 791
TaqI TCGA 4 cut(s) 609, 753, 873, 933
TasI AATT 3 cut(s) 528, 564, 568
TatI WGTACW 1 cut(s) 533
TauI GCSGC 6 cut(s) 231, 234, 246, 258, 339, 399
TfiI GAWTC 1 cut(s) 1025
Tru1I TTAA 1 cut(s) 567
Tru9I TTAA 1 cut(s) 567
TscAI CASTG 2 cut(s) 721, 796
TseFI GTSAC 2 cut(s) 176, 768
TseI GCWGC 1 cut(s) 459
Tsp45I GTSAC 2 cut(s) 176, 768
TspDTI ATGAA 2 cut(s) 587, 711
TspGWI ACGGA 2 cut(s) 459, 1018
TspRI CASTG 2 cut(s) 721, 796
Van91I CCANNNNNTGG 1 cut(s) 700
VpaK11BI GGWCC 4 cut(s) 424, 1033, 1051, 1075
VspI ATTAAT 1 cut(s) 567
XceI RCATGY 1 cut(s) 24
XspI CTAG 2 cut(s) 747, 1102
ZrmI AGTACT 1 cut(s) 535
Zsp2I ATGCAT 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.