FvH4_3g09660

Protein kinase PINOID-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
5612881 .. 5615640
2760 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g09660.t1

Sequence Viewer

Length: 1350 bp
ATGTTAGAGGTTGGTTTGGTTAGTACTTTCGCGCGTGACTCAGACAGCTCAATGAGCAGCGACACCTGTAGCAGCTTCAGCCGCCTCTCCTTCGACGCCACCGCCTCGTCCGACTTCTTCGGCACCGAGAATCTCGCCATCAAGCCGCACCGCTCCTCCGACTTCGCCTACTCCGTCATTCGCGCCAAGAAATCCTCCCTCACCTACCGCGACTTCCGCCTCCACCGCCGTATCGGCTCCGGCGACATCGGCACCGTCTACCTCTGCAGCCTCCGCAGCCCTGACTCCGACTCGTCATCTTTATCATGCTTTTACGCCATGAAAGTCGTCGACAAGGAGGCGCTGGCTCTCAAGAAGAAGGAGCCCAGAGCCGAGATGGAGCGCAAGATCCTCAAAATGCTTGACCATCCTTTCCTCCCCACTCTCTACGCCGAGTTTGAAGCCTCGCATTTCTCCTGCATCGTCATGGAGTACTGTTCCGGCGGCGACCTCCACTCCCTCCGCCATAAACAGCCCAACCGCCGCTTCTCTCTCACCTCTGCAAGGTTCTATGCTGCTGAGGTCCTGGTGGCTTTGGAGTACCTCCACATGTTGGGTGTCATCTACAGAGACTTGAAGCCGGAGAACGTGCTCGTCAGATCCGACGGTCACATCATGCTCTCCGACTTCGACCTTTCTCTCTGCTCCGACGCAATCCCCGCCGTTGAGTCACCCGACTCCTCTCCATTTCCAGACTCCATCTCAACAACTCCATCCTACACCCGCCCGCACCCGAGCAGTTTTCTCACTCCCTTCTCCTGCCTCTCGAACCGCCTCTTCCGGTCGAGGAAGGTCCAGACTTTATCCCCGAACCGCCTCTTCGTGGCCGAACCGGTCGCCGCGCGGTCGTGTTCGTTTGTTGGGACGCATGAATACGTGGCGCCGGAGGTGGCCTCCGGTAGGTCCCACGGAAACGCCGTTGACTGGTGGGCGTTTGGGATCTTCCTCTACGAGATGATCTACGGACGGACGCCGTTTGCGGCTCCATCGAATGAGATCACACTGCGAAACATTGTGAAAAGCTCCTTAACGTTTCCGACGGCCACGCCCTCTAGCGCGGTTGAGGGACACGCGCGGGATTTGATATCCGGGTTGCTGGATAAGGACCCGGAGAGGCGGCTCGGGTCGAAGCGCGGGGCCGCTGACGTCAAGAAGCATCCTTTCTTCAAGGGGATCAACTTGGCGTTGATACGGTCACTGAGGCCACCGATGATCCCGGGTCTGAGGAGGCAGCAAACGACGCCGTATTTCCACGCCAAGTCTGATCAGAATAAAAATGACGGGCAGTCCGGCGCGTTTGATTACTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

450

Amino Acids

50.07

Weight (kDa)

8.88

Isoelectric Point (pI)

54.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 73 - 226 2.5e-32 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 73 - 226 1.1e-19 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 296 - 402 6.3e-20 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0012958)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1188
AccB1I GGYRCC 3 cut(s) 122, 251, 919
AccB7I CCANNNNNTGG 1 cut(s) 592
AccBSI CCGCTC 1 cut(s) 153
AccI GTMKAC 2 cut(s) 258, 330
AclI AACGTT 1 cut(s) 1070
AclWI GGATC 5 cut(s) 382, 633, 986, 1220, 1246
AcoI YGGCCR 2 cut(s) 864, 1080
AcuI CTGAAG 1 cut(s) 61
AcyI GRCGYC 5 cut(s) 96, 920, 1010, 1185, 1280
AfaI GTAC 3 cut(s) 25, 473, 581
AfiI CCNNNNNNNGG 5 cut(s) 543, 592, 862, 939, 963
AflIII ACRYGT 1 cut(s) 588
AgeI ACCGGT 1 cut(s) 871
AgsI TTSAA 3 cut(s) 440, 616, 1207
AhdI GACNNNNNGTC 1 cut(s) 1324
AjnI CCWGG 1 cut(s) 564
AjuI GAANNNNNNNTTGG 2 cut(s) 509, 541
AluBI AGCT 3 cut(s) 48, 75, 1062
AluI AGCT 3 cut(s) 48, 75, 1062
Alw21I GWGCWC 1 cut(s) 633
Alw26I GTCTC 1 cut(s) 603
AlwI GGATC 5 cut(s) 382, 633, 986, 1220, 1246
Ama87I CYCGRG 3 cut(s) 772, 1160, 1255
AoxI GGCC 5 cut(s) 864, 930, 1080, 1176, 1241
ApeKI GCWGC 6 cut(s) 57, 72, 267, 276, 554, 1270
AsiGI ACCGGT 1 cut(s) 871
AspS9I GGNCC 5 cut(s) 562, 832, 942, 1144, 1176
AsuC2I CCSGG 4 cut(s) 1129, 1148, 1256, 1257
AsuHPI GGTGA 3 cut(s) 193, 526, 702
AvaI CYCGRG 3 cut(s) 772, 1160, 1255
AvaII GGWCC 4 cut(s) 562, 832, 942, 1144
BaeI ACNNNNGTAYC 2 cut(s) 214, 247
BanI GGYRCC 3 cut(s) 122, 251, 919
BanII GRGCYC 1 cut(s) 366
Bbv12I GWGCWC 1 cut(s) 633
BbvCI CCTCAGC 1 cut(s) 558
BbvI GCAGC 6 cut(s) 69, 84, 279, 288, 541, 1282
BccI CCATC 6 cut(s) 146, 370, 414, 746, 760, 1033
BceAI ACGGC 6 cut(s) 213, 686, 941, 997, 1095, 1267
BciT130I CCWGG 1 cut(s) 566
BclI TGATCA 1 cut(s) 1303
BcnI CCSGG 4 cut(s) 1129, 1148, 1256, 1257
BcoDI GTCTC 1 cut(s) 603
BfaI CTAG 1 cut(s) 1092
BfmI CTRYAG 3 cut(s) 67, 265, 604
BfoI RGCGCY 2 cut(s) 344, 923
BglI GCCNNNNNGGC 1 cut(s) 234
BmcAI AGTACT 2 cut(s) 25, 473
Bme1390I CCNGG 5 cut(s) 566, 1129, 1148, 1256, 1257
Bme18I GGWCC 4 cut(s) 562, 832, 942, 1144
BmeRI GACNNNNNGTC 1 cut(s) 1324
BmeT110I CYCGRG 3 cut(s) 772, 1160, 1255
BmgT120I GGNCC 5 cut(s) 562, 832, 942, 1144, 1176
BmiI GGNNCC 9 cut(s) 124, 238, 253, 363, 921, 944, 1023, 1146, 1177
BmrFI CCNGG 5 cut(s) 566, 1129, 1148, 1256, 1257
BmsI GCATC 2 cut(s) 468, 1204
BplI GAGNNNNNCTC 2 cut(s) 917, 949
Bpu10I CCTNAGC 1 cut(s) 558
BpuEI CTTGAG 1 cut(s) 335
BpuMI CCSGG 4 cut(s) 1129, 1148, 1256, 1257
BsaAI YACGTR 1 cut(s) 916
BsaHI GRCGYC 5 cut(s) 96, 920, 1010, 1185, 1280
BsaJI CCNNGG 2 cut(s) 946, 1255
BsaWI WCCGGW 3 cut(s) 819, 871, 935
BsaXI ACNNNNNCTCC 4 cut(s) 140, 170, 479, 509
Bsc4I CCNNNNNNNGG 5 cut(s) 543, 592, 862, 939, 963
Bse118I RCCGGY 1 cut(s) 871
Bse1I ACTGG 1 cut(s) 968
BseBI CCWGG 1 cut(s) 566
BseDI CCNNGG 2 cut(s) 946, 1255
BseGI GGATG 3 cut(s) 406, 752, 1195
BseLI CCNNNNNNNGG 5 cut(s) 543, 592, 862, 939, 963
BseMII CTCAG 4 cut(s) 54, 549, 1229, 1253
BseNI ACTGG 1 cut(s) 968
BseRI GAGGAG 3 cut(s) 145, 709, 1279
BseXI GCAGC 6 cut(s) 69, 84, 279, 288, 541, 1282
Bsh1285I CGRYCG 3 cut(s) 824, 876, 887
BshFI GGCC 5 cut(s) 866, 932, 1082, 1178, 1243
BshNI GGYRCC 3 cut(s) 122, 251, 919
BshTI ACCGGT 1 cut(s) 871
BsiEI CGRYCG 3 cut(s) 824, 876, 887
BsiHKAI GWGCWC 1 cut(s) 633
BsiHKCI CYCGRG 3 cut(s) 772, 1160, 1255
BslFI GGGAC 3 cut(s) 916, 928, 1119
BslI CCNNNNNNNGG 5 cut(s) 543, 592, 862, 939, 963
BsmAI GTCTC 1 cut(s) 603
BsmFI GGGAC 3 cut(s) 916, 928, 1119
BsnI GGCC 5 cut(s) 866, 932, 1082, 1178, 1243
BsoBI CYCGRG 3 cut(s) 772, 1160, 1255
Bsp1286I GDGCHC 2 cut(s) 366, 633
Bsp143I GATC 8 cut(s) 387, 638, 978, 996, 1035, 1212, 1251, 1303
BspANI GGCC 5 cut(s) 866, 932, 1082, 1178, 1243
BspCNI CTCAG 4 cut(s) 53, 550, 1230, 1254
BspLI GGNNCC 9 cut(s) 124, 238, 253, 363, 921, 944, 1023, 1146, 1177
BspMAI CTGCAG 1 cut(s) 269
BspPI GGATC 5 cut(s) 382, 633, 986, 1220, 1246
BspT107I GGYRCC 3 cut(s) 122, 251, 919
BsrBI CCGCTC 1 cut(s) 153
BsrFI RCCGGY 1 cut(s) 871
BsrI ACTGG 1 cut(s) 968
BssAI RCCGGY 1 cut(s) 871
BssECI CCNNGG 2 cut(s) 946, 1255
BssMI GATC 8 cut(s) 387, 638, 978, 996, 1035, 1212, 1251, 1303
BssNI GRCGYC 5 cut(s) 96, 920, 1010, 1185, 1280
Bst2UI CCWGG 1 cut(s) 566
Bst4CI ACNGT 4 cut(s) 256, 476, 647, 1233
Bst6I CTCTTC 2 cut(s) 821, 863
BstACI GRCGYC 5 cut(s) 96, 920, 1010, 1185, 1280
BstBAI YACGTR 1 cut(s) 916
BstC8I GCNNGC 2 cut(s) 345, 767
BstDEI CTNAG 4 cut(s) 40, 558, 1238, 1262
BstDSI CCRYGG 1 cut(s) 946
BstENI CCTNNNNNAGG 2 cut(s) 541, 937
BstF5I GGATG 3 cut(s) 406, 752, 1195
BstH2I RGCGCY 2 cut(s) 344, 923
BstKTI GATC 8 cut(s) 390, 641, 981, 999, 1038, 1215, 1254, 1306
BstMAI GTCTC 1 cut(s) 603
BstMBI GATC 8 cut(s) 387, 638, 978, 996, 1035, 1212, 1251, 1303
BstMCI CGRYCG 3 cut(s) 824, 876, 887
BstNI CCWGG 1 cut(s) 566
BstNSI RCATGY 1 cut(s) 592
BstSCI CCNGG 5 cut(s) 564, 1127, 1146, 1254, 1255
BstSFI CTRYAG 3 cut(s) 67, 265, 604
BstV1I GCAGC 6 cut(s) 69, 84, 279, 288, 541, 1282
BstX2I RGATCY 3 cut(s) 387, 638, 978
BstYI RGATCY 3 cut(s) 387, 638, 978
BsuRI GGCC 5 cut(s) 866, 932, 1082, 1178, 1243
BtgI CCRYGG 1 cut(s) 946
BtsCI GGATG 3 cut(s) 406, 752, 1195
BtsI GCAGTG 1 cut(s) 1040
BtsIMutI CAGTG 2 cut(s) 1040, 1235
Cac8I GCNNGC 2 cut(s) 345, 767
Cfr10I RCCGGY 1 cut(s) 871
Cfr13I GGNCC 5 cut(s) 562, 832, 942, 1144, 1176
Cfr9I CCCGGG 1 cut(s) 1255
CseI GACGC 5 cut(s) 104, 698, 913, 1018, 1288
Csp6I GTAC 3 cut(s) 24, 472, 580
CspAI ACCGGT 1 cut(s) 871
CviAII CATG 6 cut(s) 306, 319, 466, 589, 655, 908
CviQI GTAC 3 cut(s) 24, 472, 580
DdeI CTNAG 4 cut(s) 40, 558, 1238, 1262
DinI GGCGCC 1 cut(s) 921
DpnI GATC 8 cut(s) 389, 640, 980, 998, 1037, 1214, 1253, 1305
DpnII GATC 8 cut(s) 387, 638, 978, 996, 1035, 1212, 1251, 1303
DriI GACNNNNNGTC 1 cut(s) 1324
EaeI YGGCCR 2 cut(s) 864, 1080
Eam1104I CTCTTC 2 cut(s) 821, 863
Eam1105I GACNNNNNGTC 1 cut(s) 1324
EarI CTCTTC 2 cut(s) 821, 863
EciI GGCGGA 2 cut(s) 206, 491
Eco24I GRGCYC 1 cut(s) 366
Eco32I GATATC 1 cut(s) 1125
Eco47I GGWCC 4 cut(s) 562, 832, 942, 1144
Eco57I CTGAAG 1 cut(s) 61
Eco88I CYCGRG 3 cut(s) 772, 1160, 1255
EcoNI CCTNNNNNAGG 2 cut(s) 541, 937
EcoO109I RGGNCCY 3 cut(s) 562, 942, 1144
EcoRII CCWGG 1 cut(s) 564
EcoRV GATATC 1 cut(s) 1125
EcoT38I GRGCYC 1 cut(s) 366
EgeI GGCGCC 1 cut(s) 921
EheI GGCGCC 1 cut(s) 921
FaeI CATG 6 cut(s) 309, 322, 469, 592, 658, 911
FaiI YATR 8 cut(s) 307, 320, 467, 507, 552, 590, 656, 909
FaqI GGGAC 3 cut(s) 916, 928, 1119
FatI CATG 6 cut(s) 305, 318, 465, 588, 654, 907
FauI CCCGC 5 cut(s) 706, 770, 774, 1107, 1166
FbaI TGATCA 1 cut(s) 1303
FblI GTMKAC 2 cut(s) 258, 330
FokI GGATG 3 cut(s) 393, 739, 1182
FriOI GRGCYC 1 cut(s) 366
FspBI CTAG 1 cut(s) 1092
HaeII RGCGCY 2 cut(s) 344, 923
HaeIII GGCC 5 cut(s) 866, 932, 1082, 1178, 1243
HgaI GACGC 5 cut(s) 104, 698, 913, 1018, 1288
Hin1I GRCGYC 5 cut(s) 96, 920, 1010, 1185, 1280
Hin1II CATG 6 cut(s) 309, 322, 469, 592, 658, 911
HincII GTYRAC 2 cut(s) 331, 961
HindII GTYRAC 2 cut(s) 331, 961
HinfI GANTC 7 cut(s) 38, 130, 284, 290, 707, 716, 734
HphI GGTGA 3 cut(s) 193, 526, 702
Hpy166II GTNNAC 3 cut(s) 259, 331, 961
Hpy188III TCNNGA 5 cut(s) 352, 731, 805, 835, 1189
Hpy8I GTNNAC 3 cut(s) 259, 331, 961
Hpy99I CGWCG 6 cut(s) 98, 332, 647, 692, 1081, 1282
HpyAV CCTTC 4 cut(s) 100, 352, 802, 823
HpyCH4III ACNGT 4 cut(s) 256, 476, 647, 1233
HpyCH4IV ACGT 4 cut(s) 627, 915, 1070, 1185
HpyCH4V TGCA 3 cut(s) 267, 459, 542
HpyF3I CTNAG 4 cut(s) 40, 558, 1238, 1262
HpySE526I ACGT 4 cut(s) 627, 915, 1070, 1185
Hsp92I GRCGYC 5 cut(s) 96, 920, 1010, 1185, 1280
Hsp92II CATG 6 cut(s) 309, 322, 469, 592, 658, 911
KasI GGCGCC 1 cut(s) 919
Ksp22I TGATCA 1 cut(s) 1303
Kzo9I GATC 8 cut(s) 387, 638, 978, 996, 1035, 1212, 1251, 1303
LmnI GCTCC 7 cut(s) 158, 242, 361, 379, 689, 1027, 1067
Lsp1109I GCAGC 6 cut(s) 69, 84, 279, 288, 541, 1282
LweI GCATC 2 cut(s) 468, 1204
MaeI CTAG 1 cut(s) 1092
MaeII ACGT 4 cut(s) 627, 915, 1070, 1185
MaeIII GTNAC 4 cut(s) 35, 647, 708, 1233
MalI GATC 8 cut(s) 389, 640, 980, 998, 1037, 1214, 1253, 1305
MbiI CCGCTC 1 cut(s) 153
MboI GATC 8 cut(s) 387, 638, 978, 996, 1035, 1212, 1251, 1303
MboII GAAGA 6 cut(s) 109, 367, 808, 850, 973, 1195
MflI RGATCY 3 cut(s) 387, 638, 978
MhlI GDGCHC 2 cut(s) 366, 633
Mly113I GGCGCC 1 cut(s) 920
MlyI GAGTC 6 cut(s) 32, 278, 284, 710, 716, 728
MmeI TCCRAC 7 cut(s) 135, 183, 312, 666, 687, 711, 1100
MseI TTAA 1 cut(s) 1067
MslI CAYNNNNRTG 1 cut(s) 464
MspA1I CMGCKG 1 cut(s) 1181
MspR9I CCNGG 5 cut(s) 566, 1129, 1148, 1256, 1257
MvaI CCWGG 1 cut(s) 566
NarI GGCGCC 1 cut(s) 920
NciI CCSGG 4 cut(s) 1129, 1148, 1256, 1257
NdeII GATC 8 cut(s) 387, 638, 978, 996, 1035, 1212, 1251, 1303
NlaIII CATG 6 cut(s) 309, 322, 469, 592, 658, 911
NlaIV GGNNCC 9 cut(s) 124, 238, 253, 363, 921, 944, 1023, 1146, 1177
NmeAIII GCCGAG 2 cut(s) 397, 457
NmuCI GTSAC 4 cut(s) 35, 647, 708, 1233
NspI RCATGY 1 cut(s) 592
PciI ACATGT 1 cut(s) 588
PcsI WCGNNNNNNNCGW 4 cut(s) 171, 240, 639, 954
PfeI GAWTC 1 cut(s) 130
PflMI CCANNNNNTGG 1 cut(s) 592
PinAI ACCGGT 1 cut(s) 871
PleI GAGTC 6 cut(s) 32, 278, 284, 710, 715, 728
PluTI GGCGCC 1 cut(s) 923
PpsI GAGTC 6 cut(s) 32, 278, 284, 710, 715, 728
Ppu21I YACGTR 1 cut(s) 916
PpuMI RGGWCCY 3 cut(s) 562, 942, 1144
PscI ACATGT 1 cut(s) 588
Psp1406I AACGTT 1 cut(s) 1070
Psp5II RGGWCCY 3 cut(s) 562, 942, 1144
Psp6I CCWGG 1 cut(s) 564
PspGI CCWGG 1 cut(s) 564
PspN4I GGNNCC 9 cut(s) 124, 238, 253, 363, 921, 944, 1023, 1146, 1177
PspPI GGNCC 5 cut(s) 562, 832, 942, 1144, 1176
PspPPI RGGWCCY 3 cut(s) 562, 942, 1144
PstI CTGCAG 1 cut(s) 269
PsuI RGATCY 3 cut(s) 387, 638, 978
RsaI GTAC 3 cut(s) 25, 473, 581
RsaNI GTAC 3 cut(s) 24, 472, 580
RseI CAYNNNNRTG 1 cut(s) 464
SalI GTCGAC 1 cut(s) 329
SaqAI TTAA 1 cut(s) 1067
Sau3AI GATC 8 cut(s) 387, 638, 978, 996, 1035, 1212, 1251, 1303
Sau96I GGNCC 5 cut(s) 562, 832, 942, 1144, 1176
ScaI AGTACT 2 cut(s) 25, 473
SchI GAGTC 6 cut(s) 32, 278, 284, 710, 716, 728
ScrFI CCNGG 5 cut(s) 566, 1129, 1148, 1256, 1257
SduI GDGCHC 2 cut(s) 366, 633
SfaNI GCATC 2 cut(s) 468, 1204
SfcI CTRYAG 3 cut(s) 67, 265, 604
SfoI GGCGCC 1 cut(s) 921
SinI GGWCC 4 cut(s) 562, 832, 942, 1144
SmaI CCCGGG 1 cut(s) 1257
SmiMI CAYNNNNRTG 1 cut(s) 464
SmlI CTYRAG 1 cut(s) 350
SmoI CTYRAG 1 cut(s) 350
SspDI GGCGCC 1 cut(s) 919
SspMI CTAG 1 cut(s) 1092
StyD4I CCNGG 5 cut(s) 564, 1127, 1146, 1254, 1255
TaaI ACNGT 4 cut(s) 256, 476, 647, 1233
TaiI ACGT 4 cut(s) 630, 918, 1073, 1188
TaqI TCGA 7 cut(s) 93, 330, 669, 806, 824, 1028, 1166
TatI WGTACW 2 cut(s) 23, 471
TauI GCSGC 8 cut(s) 84, 148, 486, 525, 881, 1022, 1159, 1181
TfiI GAWTC 1 cut(s) 130
Tru1I TTAA 1 cut(s) 1067
Tru9I TTAA 1 cut(s) 1067
TscAI CASTG 2 cut(s) 1047, 1242
TseFI GTSAC 4 cut(s) 35, 647, 708, 1233
TseI GCWGC 6 cut(s) 57, 72, 267, 276, 554, 1270
Tsp45I GTSAC 4 cut(s) 35, 647, 708, 1233
TspDTI ATGAA 2 cut(s) 335, 924
TspGWI ACGGA 4 cut(s) 163, 963, 1017, 1021
TspMI CCCGGG 1 cut(s) 1255
TspRI CASTG 2 cut(s) 1047, 1242
Van91I CCANNNNNTGG 1 cut(s) 592
VpaK11BI GGWCC 4 cut(s) 562, 832, 942, 1144
XagI CCTNNNNNAGG 2 cut(s) 541, 937
XceI RCATGY 1 cut(s) 592
XcmI CCANNNNNNNNNTGG 1 cut(s) 373
XmaI CCCGGG 1 cut(s) 1255
XmiI GTMKAC 2 cut(s) 258, 330
XspI CTAG 1 cut(s) 1092
ZraI GACGTC 1 cut(s) 1186
ZrmI AGTACT 2 cut(s) 25, 473
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.