Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8298181.1

Orthogroup ID

OG0012958

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 888

Gene Structure 887 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8298181.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 578 bp

ggcgacttgcactccctccgccataaacagcctaaccgccgcttctctctcagctccgcaaggttctacgctgctgaggtcctggtggctttggagtacctccacatgttgggaatcatctacagagacctgaagccggagaacgtgctcgttagatccgacggtcacataatgctctccgactttgacctctctctctgctccgacgcaatccccgccgttgagtcacccgactcctctccggttctagagtccatctcaactccatcgtacgcccgcccccacccgagcactctcactcccttctcctgcctctcaaaccggctgttccggtcgagaaaggtgcagactttgtcgccgaaccgcctcttcgtggctgagccggtcgccgcccggtcatgctcgttcgtcgggacccacgagtacgtggcgccggaggttgcttccggtaggtcccacggcaacgcggttgactggtgggcgtttgggatcttcctctacgagatgatctacgggcggacgccgtttgcggctccatcgaacgagactacactgcgaagcatcgtgaaaagtccctt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009908 GO:0009914 GO:0009926 GO:0009958 GO:0009986 GO:0009987 GO:0010015 GO:0010033 GO:0010053 GO:0010054 GO:0010154 GO:0010817 GO:0016020 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0021700 GO:0022414 GO:0022622 GO:0023052 GO:0030154 GO:0032501 GO:0032502 GO:0032870 GO:0032879 GO:0032989 GO:0035556 GO:0036211 GO:0040007 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048608 GO:0048731 GO:0048764 GO:0048765 GO:0048766 GO:0048767 GO:0048825 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051179 GO:0051234 GO:0051716 GO:0060560 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071695 GO:0071704 GO:0071840 GO:0071944 GO:0080147 GO:0080167 GO:0090558 GO:0090567 GO:0090627 GO:0099402 GO:0140096 GO:1901564 GO:1905392 GO:2000012

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

192

Amino Acids

21.36

Weight (kDa)

7.95

Isoelectric Point (pI)

62.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012958)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34650
fragaria_vesca	FvH4_3g09660
malus_domestica	MD00G1109900.v1.1 MD05G1276300.v1.1
prunus_persica	Prupe.4G088000_v2.0.a1 Prupe.4G088000_v2.0.a1
pyrus_communis	pycom05g25730 pycom10g21130
rosa_chinensis	RchiOBHm_Chr5g0015331
rosa_laevigata	RLG00000032193
rosa_multiflora	Rmu_co8298181.1_g000001
rosa_roxburghii	Rroxscaffold_1G00061120
rosa_rugosa	Rorug05G0026700
rosa_samantha	Rh5AG120200 Rh5BG119100 Rh5CG129600 Rh5DG118000
rosa_wichuraiana	Rw5G010390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	430
AccB7I	CCANNNNNTGG	1 cut(s)	109
AccII	CGCG	1 cut(s)	467
AclWI	GGATC	2 cut(s)	150, 497
AcuI	CTGAAG	1 cut(s)	152
AcyI	GRCGYC	2 cut(s)	431, 521
AfaI	GTAC	3 cut(s)	98, 272, 425
AfiI	CCNNNNNNNGG	3 cut(s)	109, 136, 373
AflIII	ACRYGT	1 cut(s)	105
AjnI	CCWGG	1 cut(s)	81
AluBI	AGCT	1 cut(s)	54
AluI	AGCT	1 cut(s)	54
Alw21I	GWGCWC	2 cut(s)	150, 293
Alw26I	GTCTC	2 cut(s)	120, 539
AlwI	GGATC	2 cut(s)	150, 497
Ama87I	CYCGRG	1 cut(s)	286
ApeKI	GCWGC	1 cut(s)	71
AspLEI	GCGC	1 cut(s)	433
AspS9I	GGNCC	3 cut(s)	79, 414, 453
AsuC2I	CCSGG	1 cut(s)	394
AsuHPI	GGTGA	1 cut(s)	219
AvaI	CYCGRG	1 cut(s)	286
AvaII	GGWCC	3 cut(s)	79, 414, 453
BanI	GGYRCC	1 cut(s)	430
BauI	CACGAG	1 cut(s)	419
Bbv12I	GWGCWC	2 cut(s)	150, 293
BbvCI	CCTCAGC	1 cut(s)	75
BbvI	GCAGC	1 cut(s)	58
BccI	CCATC	3 cut(s)	263, 274, 544
BceAI	ACGGC	3 cut(s)	203, 475, 508
BcgI	CGANNNNNNTGC	2 cut(s)	325, 359
BciT130I	CCWGG	1 cut(s)	83
BcnI	CCSGG	1 cut(s)	394
BcoDI	GTCTC	2 cut(s)	120, 539
BfaI	CTAG	1 cut(s)	248
BfmI	CTRYAG	1 cut(s)	121
BfoI	RGCGCY	1 cut(s)	434
BisI	GCNGC	4 cut(s)	40, 72, 390, 531
BlpI	GCTNAGC	1 cut(s)	378
BlsI	GCNGC	4 cut(s)	41, 73, 391, 532
Bme1390I	CCNGG	2 cut(s)	83, 394
Bme18I	GGWCC	3 cut(s)	79, 414, 453
BmeT110I	CYCGRG	1 cut(s)	286
BmgT120I	GGNCC	3 cut(s)	79, 414, 453
BmiI	GGNNCC	5 cut(s)	415, 416, 432, 455, 534
BmrFI	CCNGG	2 cut(s)	83, 394
BmsI	GCATC	1 cut(s)	570
BplI	GAGNNNNNCTC	2 cut(s)	242, 274
Bpu10I	CCTNAGC	1 cut(s)	75
Bpu1102I	GCTNAGC	1 cut(s)	378
BpuMI	CCSGG	1 cut(s)	394
BsaAI	YACGTR	1 cut(s)	427
BsaHI	GRCGYC	2 cut(s)	431, 521
BsaI	GGTCTC	1 cut(s)	120
BsaJI	CCNNGG	1 cut(s)	457
BsaWI	WCCGGW	3 cut(s)	241, 330, 446
BsaXI	ACNNNNNCTCC	3 cut(s)	26, 283, 313
Bsc4I	CCNNNNNNNGG	3 cut(s)	109, 136, 373
Bse118I	RCCGGY	2 cut(s)	321, 382
Bse1I	ACTGG	1 cut(s)	479
BseBI	CCWGG	1 cut(s)	83
BseDI	CCNNGG	1 cut(s)	457
BseLI	CCNNNNNNNGG	3 cut(s)	109, 136, 373
BseMII	CTCAG	3 cut(s)	64, 66, 369
BseNI	ACTGG	1 cut(s)	479
BseRI	GAGGAG	1 cut(s)	226
BseXI	GCAGC	1 cut(s)	58
BsgI	GTGCAG	1 cut(s)	365
Bsh1236I	CGCG	1 cut(s)	467
Bsh1285I	CGRYCG	2 cut(s)	335, 387
BshNI	GGYRCC	1 cut(s)	430
BsiEI	CGRYCG	2 cut(s)	335, 387
BsiHKAI	GWGCWC	2 cut(s)	150, 293
BsiHKCI	CYCGRG	1 cut(s)	286
BsiSI	CCGG	8 cut(s)	137, 242, 322, 331, 383, 394, 434, 447
BsiWI	CGTACG	1 cut(s)	270
BslFI	GGGAC	3 cut(s)	427, 439, 558
BslI	CCNNNNNNNGG	3 cut(s)	109, 136, 373
BsmAI	GTCTC	2 cut(s)	120, 539
BsmFI	GGGAC	3 cut(s)	427, 439, 558
Bso31I	GGTCTC	1 cut(s)	120
BsoBI	CYCGRG	1 cut(s)	286
Bsp1286I	GDGCHC	2 cut(s)	150, 293
Bsp143I	GATC	3 cut(s)	155, 489, 507
Bsp1720I	GCTNAGC	1 cut(s)	378
BspCNI	CTCAG	3 cut(s)	63, 67, 370
BspFNI	CGCG	1 cut(s)	467
BspLI	GGNNCC	5 cut(s)	415, 416, 432, 455, 534
BspPI	GGATC	2 cut(s)	150, 497
BspT107I	GGYRCC	1 cut(s)	430
BspTNI	GGTCTC	1 cut(s)	120
BsrFI	RCCGGY	2 cut(s)	321, 382
BsrI	ACTGG	1 cut(s)	479
BssAI	RCCGGY	2 cut(s)	321, 382
BssECI	CCNNGG	1 cut(s)	457
BssMI	GATC	3 cut(s)	155, 489, 507
BssNI	GRCGYC	2 cut(s)	431, 521
BssSI	CACGAG	1 cut(s)	419
Bst2BI	CACGAG	1 cut(s)	419
Bst2UI	CCWGG	1 cut(s)	83
Bst4CI	ACNGT	1 cut(s)	164
Bst6I	CTCTTC	1 cut(s)	374
BstACI	GRCGYC	2 cut(s)	431, 521
BstBAI	YACGTR	1 cut(s)	427
BstC8I	GCNNGC	1 cut(s)	277
BstDEI	CTNAG	3 cut(s)	50, 75, 378
BstDSI	CCRYGG	1 cut(s)	457
BstFNI	CGCG	1 cut(s)	467
BstH2I	RGCGCY	1 cut(s)	434
BstHHI	GCGC	1 cut(s)	433
BstKTI	GATC	3 cut(s)	158, 492, 510
BstMAI	GTCTC	2 cut(s)	120, 539
BstMBI	GATC	3 cut(s)	155, 489, 507
BstMCI	CGRYCG	2 cut(s)	335, 387
BstMWI	GCNNNNNNNGC	1 cut(s)	215
BstNI	CCWGG	1 cut(s)	83
BstNSI	RCATGY	1 cut(s)	109
BstSCI	CCNGG	2 cut(s)	81, 392
BstSFI	CTRYAG	1 cut(s)	121
BstUI	CGCG	1 cut(s)	467
BstV1I	GCAGC	1 cut(s)	58
BstX2I	RGATCY	2 cut(s)	155, 489
BstYI	RGATCY	2 cut(s)	155, 489
BtgI	CCRYGG	1 cut(s)	457
BtsI	GCAGTG	1 cut(s)	551
BtsIMutI	CAGTG	1 cut(s)	551
Cac8I	GCNNGC	1 cut(s)	277
CfoI	GCGC	1 cut(s)	433
Cfr10I	RCCGGY	2 cut(s)	321, 382
Cfr13I	GGNCC	3 cut(s)	79, 414, 453
CseI	GACGC	2 cut(s)	215, 529
Csp6I	GTAC	3 cut(s)	97, 271, 424
CviAII	CATG	2 cut(s)	106, 399
CviJI	RGCY	8 cut(s)	31, 54, 89, 136, 325, 377, 382, 533
CviKI_1	RGCY	8 cut(s)	31, 54, 89, 136, 325, 377, 382, 533
CviQI	GTAC	3 cut(s)	97, 271, 424
DdeI	CTNAG	3 cut(s)	50, 75, 378
DinI	GGCGCC	1 cut(s)	432
DpnI	GATC	3 cut(s)	157, 491, 509
DpnII	GATC	3 cut(s)	155, 489, 507
Eam1104I	CTCTTC	1 cut(s)	374
EarI	CTCTTC	1 cut(s)	374
EciI	GGCGGA	2 cut(s)	8, 532
Eco31I	GGTCTC	1 cut(s)	120
Eco47I	GGWCC	3 cut(s)	79, 414, 453
Eco57I	CTGAAG	1 cut(s)	152
Eco88I	CYCGRG	1 cut(s)	286
EcoO109I	RGGNCCY	3 cut(s)	79, 414, 453
EcoRII	CCWGG	1 cut(s)	81
EgeI	GGCGCC	1 cut(s)	432
EheI	GGCGCC	1 cut(s)	432
FaeI	CATG	2 cut(s)	109, 402
FaiI	YATR	4 cut(s)	24, 107, 170, 400
FaqI	GGGAC	3 cut(s)	427, 439, 558
FatI	CATG	2 cut(s)	105, 398
FauI	CCCGC	2 cut(s)	223, 284
Fnu4HI	GCNGC	4 cut(s)	40, 72, 390, 531
Fsp4HI	GCNGC	4 cut(s)	40, 72, 390, 531
FspBI	CTAG	1 cut(s)	248
GlaI	GCGC	1 cut(s)	432
GluI	GCNGC	4 cut(s)	40, 72, 390, 531
HaeII	RGCGCY	1 cut(s)	434
HapII	CCGG	8 cut(s)	137, 242, 322, 331, 383, 394, 434, 447
HgaI	GACGC	2 cut(s)	215, 529
HhaI	GCGC	1 cut(s)	433
Hin1I	GRCGYC	2 cut(s)	431, 521
Hin1II	CATG	2 cut(s)	109, 402
Hin6I	GCGC	1 cut(s)	431
HinP1I	GCGC	1 cut(s)	431
HincII	GTYRAC	1 cut(s)	472
HindII	GTYRAC	1 cut(s)	472
HinfI	GANTC	4 cut(s)	114, 224, 233, 251
HpaII	CCGG	8 cut(s)	137, 242, 322, 331, 383, 394, 434, 447
HphI	GGTGA	1 cut(s)	219
Hpy166II	GTNNAC	1 cut(s)	472
Hpy188I	TCNGA	3 cut(s)	160, 181, 205
Hpy188III	TCNNGA	4 cut(s)	248, 336, 412, 565
Hpy8I	GTNNAC	1 cut(s)	472
Hpy99I	CGWCG	3 cut(s)	164, 209, 413
HpyAV	CCTTC	1 cut(s)	313
HpyCH4III	ACNGT	1 cut(s)	164
HpyCH4IV	ACGT	2 cut(s)	144, 426
HpyCH4V	TGCA	2 cut(s)	10, 346
HpyF10VI	GCNNNNNNNGC	1 cut(s)	215
HpyF3I	CTNAG	3 cut(s)	50, 75, 378
HpySE526I	ACGT	2 cut(s)	144, 426
Hsp92I	GRCGYC	2 cut(s)	431, 521
Hsp92II	CATG	2 cut(s)	109, 402
HspAI	GCGC	1 cut(s)	431
KasI	GGCGCC	1 cut(s)	430
KflI	GGGWCCC	1 cut(s)	414
Kzo9I	GATC	3 cut(s)	155, 489, 507
LmnI	GCTCC	3 cut(s)	59, 206, 538
Lsp1109I	GCAGC	1 cut(s)	58
LweI	GCATC	1 cut(s)	570
MaeI	CTAG	1 cut(s)	248
MaeII	ACGT	2 cut(s)	144, 426
MaeIII	GTNAC	2 cut(s)	164, 225
MalI	GATC	3 cut(s)	157, 491, 509
MboI	GATC	3 cut(s)	155, 489, 507
MboII	GAAGA	2 cut(s)	361, 484
MflI	RGATCY	2 cut(s)	155, 489
MhlI	GDGCHC	2 cut(s)	150, 293
Mly113I	GGCGCC	1 cut(s)	431
MlyI	GAGTC	3 cut(s)	227, 233, 260
MmeI	TCCRAC	3 cut(s)	183, 204, 228
MnlI	CCTC	9 cut(s)	26, 70, 110, 200, 247, 323, 377, 430, 506
MspI	CCGG	8 cut(s)	137, 242, 322, 331, 383, 394, 434, 447
MspR9I	CCNGG	2 cut(s)	83, 394
MvaI	CCWGG	1 cut(s)	83
MvnI	CGCG	1 cut(s)	467
MwoI	GCNNNNNNNGC	1 cut(s)	215
NarI	GGCGCC	1 cut(s)	431
NciI	CCSGG	1 cut(s)	394
NdeII	GATC	3 cut(s)	155, 489, 507
NlaIII	CATG	2 cut(s)	109, 402
NlaIV	GGNNCC	5 cut(s)	415, 416, 432, 455, 534
NmuCI	GTSAC	2 cut(s)	164, 225
NspI	RCATGY	1 cut(s)	109
PciI	ACATGT	1 cut(s)	105
PcsI	WCGNNNNNNNCGW	2 cut(s)	156, 417
PfeI	GAWTC	1 cut(s)	114
Pfl23II	CGTACG	1 cut(s)	270
PflFI	GACNNNGTC	1 cut(s)	352
PflMI	CCANNNNNTGG	1 cut(s)	109
PkrI	GCNGC	4 cut(s)	41, 73, 391, 532
PleI	GAGTC	3 cut(s)	227, 232, 259
PluTI	GGCGCC	1 cut(s)	434
PpsI	GAGTC	3 cut(s)	227, 232, 259
Ppu21I	YACGTR	1 cut(s)	427
PpuMI	RGGWCCY	3 cut(s)	79, 414, 453
PscI	ACATGT	1 cut(s)	105
Psp5II	RGGWCCY	3 cut(s)	79, 414, 453
Psp6I	CCWGG	1 cut(s)	81
PspGI	CCWGG	1 cut(s)	81
PspLI	CGTACG	1 cut(s)	270
PspN4I	GGNNCC	5 cut(s)	415, 416, 432, 455, 534
PspPI	GGNCC	3 cut(s)	79, 414, 453
PspPPI	RGGWCCY	3 cut(s)	79, 414, 453
PsuI	RGATCY	2 cut(s)	155, 489
PsyI	GACNNNGTC	1 cut(s)	352
RsaI	GTAC	3 cut(s)	98, 272, 425
RsaNI	GTAC	3 cut(s)	97, 271, 424
SatI	GCNGC	4 cut(s)	40, 72, 390, 531
Sau3AI	GATC	3 cut(s)	155, 489, 507
Sau96I	GGNCC	3 cut(s)	79, 414, 453
SchI	GAGTC	3 cut(s)	227, 233, 260
ScrFI	CCNGG	2 cut(s)	83, 394
SduI	GDGCHC	2 cut(s)	150, 293
SfaNI	GCATC	1 cut(s)	570
SfcI	CTRYAG	1 cut(s)	121
SfoI	GGCGCC	1 cut(s)	432
SinI	GGWCC	3 cut(s)	79, 414, 453
SspDI	GGCGCC	1 cut(s)	430
SspMI	CTAG	1 cut(s)	248
StyD4I	CCNGG	2 cut(s)	81, 392
TaaI	ACNGT	1 cut(s)	164
TaiI	ACGT	2 cut(s)	147, 429
TaqI	TCGA	2 cut(s)	335, 539
TauI	GCSGC	3 cut(s)	42, 392, 533
TfiI	GAWTC	1 cut(s)	114
TscAI	CASTG	1 cut(s)	558
TseFI	GTSAC	2 cut(s)	164, 225
TseI	GCWGC	1 cut(s)	71
Tsp45I	GTSAC	2 cut(s)	164, 225
TspRI	CASTG	1 cut(s)	558
Tth111I	GACNNNGTC	1 cut(s)	352
Van91I	CCANNNNNTGG	1 cut(s)	109
VpaK11BI	GGWCC	3 cut(s)	79, 414, 453
XbaI	TCTAGA	1 cut(s)	247
XceI	RCATGY	1 cut(s)	109
XspI	CTAG	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.