Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0009666

Physical Location & Seq

Genomic Coordinates Forward (+)

6642200 .. 6646832

Gene Structure 4633 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g11290.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGGGAGGGGGAAAGTGGTGATGAAGAGAATCGAGAACAAGATAAACCGGCAAGTTACGTTTACGAAACGACGGCTGGGTTTGTTCAAGAAAGCTCAGGAGCTCTCTGTGCTCTGTGATGCCCAAGTTGCCCTTATCGTCTCCTCCAGCCGCGGCAAGCTCTTCGACTTTGCCAGCACCAACGATGTAAACGAAATCCTCAACCGCTACCAATGCTGCTATTCCTCACAAGACAATGCTGCTGAGAGTGAAACACAGAACTCATATCAAGAGGTCTCAAGATTGAAAGTCAGATATGAATCTCTTCAGAGTTGGCAAAGGCATTTTCTTGGAGAAGATCTTGATAAACTTCGTCTGAAAGAATTGGCACGTCTCGAGAAACAGCTTGACAGAACTCTTTCACGAGCTAGACAAAGAAAGACGCAGATGATGTTAGATCAATTAGAAGCACTACGCAGAAAGGAGAGTGATCTTGAAGAGATCAATAAGCAGCTCAAATCTGAGCTTGAAGAAAGGGAAAAACATGATGACAATACTGATGAGGAGGATGATGATGAAGCATTAATTCATGATCGTCCGGGAGGAGAGCCTACTGTAGCTGCTGGAGCTTCTCAGAAGAACATTTCTACTAAAACGCCCTCTGCAAATGCTAATCAAGAGCCTACATTATGCTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009553 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0010016 GO:0010022 GO:0010073 GO:0010093 GO:0010094 GO:0010154 GO:0010468 GO:0010556 GO:0010557 GO:0010582 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0035670 GO:0040007 GO:0045893 GO:0045935 GO:0046983 GO:0048229 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048439 GO:0048440 GO:0048443 GO:0048444 GO:0048445 GO:0048448 GO:0048449 GO:0048455 GO:0048457 GO:0048459 GO:0048461 GO:0048462 GO:0048466 GO:0048467 GO:0048481 GO:0048507 GO:0048509 GO:0048518 GO:0048522 GO:0048532 GO:0048589 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048832 GO:0048833 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0080060 GO:0080090 GO:0080112 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

226

Amino Acids

25.92

Weight (kDa)

6.38

Isoelectric Point (pI)

51.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	9.8e-25	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	81 - 140	4.4e-16	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009666)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g11290 FvH4_3g11290 FvH4_3g11290 FvH4_3g11290 FvH4_7g28690 FvH4_7g28690 FvH4_7g28690
malus_domestica	MD01G1192400.v1.1
prunus_persica	Prupe.2G287000_v2.0.a1 Prupe.2G287000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0376191
rosa_laevigata	RLG00000026622
rosa_multiflora	Rmu_ssc0000116.1_g000053
rosa_roxburghii	Rroxscaffold_4G00282320
rosa_rugosa	Rorug01G0394300
rosa_samantha	Rh1AG405900 Rh1BG369600 Rh1CG382300 Rh1CG382500 Rh1DG399200 Rh1DG399400
rosa_wichuraiana	Rw1G036010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	153
AciI	CCGC	3 cut(s)	151, 153, 205
AcuI	CTGAAG	1 cut(s)	290
AgsI	TTSAA	4 cut(s)	88, 286, 476, 509
AjiI	CACGTC	1 cut(s)	371
AluBI	AGCT	9 cut(s)	95, 103, 160, 385, 407, 493, 505, 599, 608
AluI	AGCT	9 cut(s)	95, 103, 160, 385, 407, 493, 505, 599, 608
Alw21I	GWGCWC	2 cut(s)	105, 114
Alw26I	GTCTC	3 cut(s)	145, 280, 377
Ama87I	CYCGRG	1 cut(s)	374
ApeKI	GCWGC	4 cut(s)	216, 239, 490, 599
AseI	ATTAAT	1 cut(s)	563
Asp700I	GAANNNNTTC	2 cut(s)	303, 397
AsuC2I	CCSGG	1 cut(s)	579
AsuHPI	GGTGA	1 cut(s)	31
AvaI	CYCGRG	1 cut(s)	374
BanII	GRGCYC	1 cut(s)	105
BauI	CACGAG	1 cut(s)	402
Bbv12I	GWGCWC	2 cut(s)	105, 114
BbvI	GCAGC	4 cut(s)	203, 226, 502, 586
BceAI	ACGGC	1 cut(s)	89
BcgI	CGANNNNNNTGC	2 cut(s)	145, 179
BcnI	CCSGG	1 cut(s)	579
BcoDI	GTCTC	3 cut(s)	145, 280, 377
BfaI	CTAG	1 cut(s)	408
BfmI	CTRYAG	1 cut(s)	594
BglII	AGATCT	1 cut(s)	337
BisI	GCNGC	6 cut(s)	151, 154, 217, 240, 491, 600
BlsI	GCNGC	6 cut(s)	152, 155, 218, 241, 492, 601
Bme1390I	CCNGG	1 cut(s)	579
BmeT110I	CYCGRG	1 cut(s)	374
BmgBI	CACGTC	1 cut(s)	371
BmrFI	CCNGG	1 cut(s)	579
BmsI	GCATC	1 cut(s)	109
BpmI	CTGGAG	2 cut(s)	130, 624
Bpu10I	CCTNAGC	1 cut(s)	96
BpuEI	CTTGAG	1 cut(s)	262
BpuMI	CCSGG	1 cut(s)	579
BsaBI	GATNNNNATC	1 cut(s)	298
BsaI	GGTCTC	1 cut(s)	280
BsaJI	CCNNGG	1 cut(s)	151
Bse118I	RCCGGY	1 cut(s)	48
Bse8I	GATNNNNATC	1 cut(s)	298
BseDI	CCNNGG	1 cut(s)	151
BseGI	GGATG	1 cut(s)	553
BseJI	GATNNNNATC	1 cut(s)	298
BseMII	CTCAG	4 cut(s)	110, 234, 492, 626
BseRI	GAGGAG	3 cut(s)	133, 557, 597
BseXI	GCAGC	4 cut(s)	203, 226, 502, 586
BseYI	CCCAGC	1 cut(s)	76
Bsh1236I	CGCG	1 cut(s)	153
BsiHKAI	GWGCWC	2 cut(s)	105, 114
BsiHKCI	CYCGRG	1 cut(s)	374
BsiSI	CCGG	2 cut(s)	49, 578
BsmAI	GTCTC	3 cut(s)	145, 280, 377
BsmBI	CGTCTC	2 cut(s)	145, 377
Bso31I	GGTCTC	1 cut(s)	280
BsoBI	CYCGRG	1 cut(s)	374
Bsp1286I	GDGCHC	2 cut(s)	105, 114
Bsp143I	GATC	5 cut(s)	337, 436, 469, 480, 571
BspACI	CCGC	3 cut(s)	151, 153, 205
BspCNI	CTCAG	4 cut(s)	109, 235, 493, 625
BspFNI	CGCG	1 cut(s)	153
BspHI	TCATGA	1 cut(s)	568
BspQI	GCTCTTC	1 cut(s)	167
BspTNI	GGTCTC	1 cut(s)	280
BsrFI	RCCGGY	1 cut(s)	48
BssAI	RCCGGY	1 cut(s)	48
BssECI	CCNNGG	1 cut(s)	151
BssMI	GATC	5 cut(s)	337, 436, 469, 480, 571
BssSI	CACGAG	1 cut(s)	402
Bst2BI	CACGAG	1 cut(s)	402
Bst4CI	ACNGT	1 cut(s)	595
Bst6I	CTCTTC	4 cut(s)	20, 167, 309, 471
BstC8I	GCNNGC	2 cut(s)	158, 175
BstDEI	CTNAG	4 cut(s)	96, 243, 501, 612
BstDSI	CCRYGG	1 cut(s)	151
BstF5I	GGATG	1 cut(s)	553
BstFNI	CGCG	1 cut(s)	153
BstKTI	GATC	5 cut(s)	340, 439, 472, 483, 574
BstMAI	GTCTC	3 cut(s)	145, 280, 377
BstMBI	GATC	5 cut(s)	337, 436, 469, 480, 571
BstMWI	GCNNNNNNNGC	4 cut(s)	109, 128, 213, 605
BstSCI	CCNGG	1 cut(s)	577
BstSFI	CTRYAG	1 cut(s)	594
BstUI	CGCG	1 cut(s)	153
BstV1I	GCAGC	4 cut(s)	203, 226, 502, 586
BstX2I	RGATCY	1 cut(s)	337
BstYI	RGATCY	1 cut(s)	337
BtgI	CCRYGG	1 cut(s)	151
BtrI	CACGTC	1 cut(s)	371
BtsCI	GGATG	1 cut(s)	553
Cac8I	GCNNGC	2 cut(s)	158, 175
CciI	TCATGA	1 cut(s)	568
Cfr10I	RCCGGY	1 cut(s)	48
Cfr42I	CCGCGG	1 cut(s)	154
CseI	GACGC	1 cut(s)	430
CviAII	CATG	2 cut(s)	524, 569
DdeI	CTNAG	4 cut(s)	96, 243, 501, 612
DpnI	GATC	5 cut(s)	339, 438, 471, 482, 573
DpnII	GATC	5 cut(s)	337, 436, 469, 480, 571
Eam1104I	CTCTTC	4 cut(s)	20, 167, 309, 471
EarI	CTCTTC	4 cut(s)	20, 167, 309, 471
Ecl136II	GAGCTC	1 cut(s)	103
Eco24I	GRGCYC	1 cut(s)	105
Eco31I	GGTCTC	1 cut(s)	280
Eco53kI	GAGCTC	1 cut(s)	103
Eco57I	CTGAAG	1 cut(s)	290
Eco88I	CYCGRG	1 cut(s)	374
EcoICRI	GAGCTC	1 cut(s)	103
EcoT38I	GRGCYC	1 cut(s)	105
Esp3I	CGTCTC	2 cut(s)	145, 377
FaeI	CATG	2 cut(s)	527, 572
FaiI	YATR	6 cut(s)	265, 297, 525, 570, 670, 676
FalI	AAGNNNNNCTT	2 cut(s)	117, 149
FatI	CATG	2 cut(s)	523, 568
Fnu4HI	GCNGC	6 cut(s)	151, 154, 217, 240, 491, 600
FokI	GGATG	1 cut(s)	560
FriOI	GRGCYC	1 cut(s)	105
Fsp4HI	GCNGC	6 cut(s)	151, 154, 217, 240, 491, 600
FspBI	CTAG	1 cut(s)	408
GluI	GCNGC	6 cut(s)	151, 154, 217, 240, 491, 600
GsaI	CCCAGC	1 cut(s)	80
GsuI	CTGGAG	2 cut(s)	130, 624
HapII	CCGG	2 cut(s)	49, 578
HgaI	GACGC	1 cut(s)	430
Hin1II	CATG	2 cut(s)	527, 572
HinfI	GANTC	2 cut(s)	30, 299
HpaII	CCGG	2 cut(s)	49, 578
HphI	GGTGA	1 cut(s)	31
Hpy166II	GTNNAC	2 cut(s)	63, 190
Hpy188I	TCNGA	5 cut(s)	293, 309, 357, 502, 615
Hpy8I	GTNNAC	2 cut(s)	63, 190
Hpy99I	CGWCG	1 cut(s)	75
HpyCH4III	ACNGT	1 cut(s)	595
HpyCH4IV	ACGT	2 cut(s)	59, 370
HpyCH4V	TGCA	1 cut(s)	644
HpyF10VI	GCNNNNNNNGC	4 cut(s)	109, 128, 213, 605
HpyF3I	CTNAG	4 cut(s)	96, 243, 501, 612
HpySE526I	ACGT	2 cut(s)	59, 370
Hsp92II	CATG	2 cut(s)	527, 572
KspI	CCGCGG	1 cut(s)	154
Kzo9I	GATC	5 cut(s)	337, 436, 469, 480, 571
LguI	GCTCTTC	1 cut(s)	167
LmnI	GCTCC	2 cut(s)	100, 605
LpnPI	CCDG	7 cut(s)	62, 62, 83, 160, 187, 588, 591
Lsp1109I	GCAGC	4 cut(s)	203, 226, 502, 586
LweI	GCATC	1 cut(s)	109
MaeI	CTAG	1 cut(s)	408
MaeII	ACGT	2 cut(s)	59, 370
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	5 cut(s)	339, 438, 471, 482, 573
MboI	GATC	5 cut(s)	337, 436, 469, 480, 571
MboII	GAAGA	7 cut(s)	37, 154, 296, 347, 488, 521, 628
MflI	RGATCY	1 cut(s)	337
MhlI	GDGCHC	2 cut(s)	105, 114
MluCI	AATT	3 cut(s)	362, 440, 564
MnlI	CCTC	8 cut(s)	154, 209, 235, 265, 535, 538, 575, 649
MroXI	GAANNNNTTC	2 cut(s)	303, 397
MseI	TTAA	1 cut(s)	563
MspA1I	CMGCKG	1 cut(s)	153
MspI	CCGG	2 cut(s)	49, 578
MspR9I	CCNGG	1 cut(s)	579
MvnI	CGCG	1 cut(s)	153
MwoI	GCNNNNNNNGC	4 cut(s)	109, 128, 213, 605
NciI	CCSGG	1 cut(s)	579
NdeII	GATC	5 cut(s)	337, 436, 469, 480, 571
NlaIII	CATG	2 cut(s)	527, 572
PaeR7I	CTCGAG	1 cut(s)	374
PagI	TCATGA	1 cut(s)	568
PciSI	GCTCTTC	1 cut(s)	167
PcsI	WCGNNNNNNNCGW	1 cut(s)	189
PdmI	GAANNNNTTC	2 cut(s)	303, 397
PfeI	GAWTC	2 cut(s)	30, 299
PfoI	TCCNGGA	1 cut(s)	577
PkrI	GCNGC	6 cut(s)	152, 155, 218, 241, 492, 601
PshBI	ATTAAT	1 cut(s)	563
Psp124BI	GAGCTC	1 cut(s)	105
PspFI	CCCAGC	1 cut(s)	76
PsuI	RGATCY	1 cut(s)	337
SacI	GAGCTC	1 cut(s)	105
SacII	CCGCGG	1 cut(s)	154
SapI	GCTCTTC	1 cut(s)	167
SaqAI	TTAA	1 cut(s)	563
SatI	GCNGC	6 cut(s)	151, 154, 217, 240, 491, 600
Sau3AI	GATC	5 cut(s)	337, 436, 469, 480, 571
ScrFI	CCNGG	1 cut(s)	579
SduI	GDGCHC	2 cut(s)	105, 114
SfaNI	GCATC	1 cut(s)	109
SfcI	CTRYAG	1 cut(s)	594
Sfr274I	CTCGAG	1 cut(s)	374
Sfr303I	CCGCGG	1 cut(s)	154
SgrBI	CCGCGG	1 cut(s)	154
SlaI	CTCGAG	1 cut(s)	374
SmlI	CTYRAG	2 cut(s)	277, 374
SmoI	CTYRAG	2 cut(s)	277, 374
Sse9I	AATT	3 cut(s)	362, 440, 564
SsiI	CCGC	3 cut(s)	151, 153, 205
SspMI	CTAG	1 cut(s)	408
SstI	GAGCTC	1 cut(s)	105
StyD4I	CCNGG	1 cut(s)	577
TaaI	ACNGT	1 cut(s)	595
TaiI	ACGT	2 cut(s)	62, 373
TaqI	TCGA	3 cut(s)	33, 165, 375
TasI	AATT	3 cut(s)	362, 440, 564
TauI	GCSGC	2 cut(s)	153, 156
TfiI	GAWTC	2 cut(s)	30, 299
Tru1I	TTAA	1 cut(s)	563
Tru9I	TTAA	1 cut(s)	563
TseI	GCWGC	4 cut(s)	216, 239, 490, 599
TspDTI	ATGAA	4 cut(s)	38, 312, 557, 570
VspI	ATTAAT	1 cut(s)	563
XhoI	CTCGAG	1 cut(s)	374
XmnI	GAANNNNTTC	2 cut(s)	303, 397
XspI	CTAG	1 cut(s)	408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.