Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0009666

Physical Location & Seq

Genomic Coordinates Reverse (-)

4357464 .. 4363663

Gene Structure 6200 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00282320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGGGAGAGGGAAAGTGGAATTGAAGAGAATCGAGAATAAGATAAACCGGCAAGTGACCTTTTCGAAACGACGGCTCGGTCTGTTCAAGAAAGCTCAGGAGCTCTCTGTGCTCTGCGATGCCCAAGTTGCCCTTATCGTCTCCTCCAGCCGCGGCAAGGTCTTCGACTTTGCCAGCACCAACGATGTAAACGAAATTCTCAACCGGTACCAACAAAGCTGCTATTCCTCACAAGACAATGTTGCTAAGAATGAAACACAGAACTTATATCAAGAAGTCTCAAGATTGAAAGTCAAATATGAATCTCTTCAGCGTTCGCAAAGGCATTTTCTTGGAGAAGATCTTGAAAAACTTCGTCTGAAAGAATTGGAAAATCTTGAGAAACAGCTTGACAGAACTCTTTCACAAGCTAGACAAAGGAAGACATTTCCTGGTTTATATATGCAGATGCAGATGATGTTAGATCAATTAGAAGCACTACGCAGAAAGGAGAATGATCTTGAAGAGATACATAAGCAGCTAAAATCTGAGCTTGAAGAAAGGGAAAAACATAGCGACAATGATGATGATGAAGCATTAATTCAACGTCGTCCAGGAGGAGAGCCTACTGTAGCTGCTGGAGCTTCTCATGAAAACATTTCTAGTAAAACGCGCTCTGCAAATGCTAATCAGCAAGAGCCCACTTATGAATATGTTCGGGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009553 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0010016 GO:0010022 GO:0010073 GO:0010093 GO:0010094 GO:0010154 GO:0010468 GO:0010556 GO:0010557 GO:0010582 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0035670 GO:0040007 GO:0045893 GO:0045935 GO:0046983 GO:0048229 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048439 GO:0048440 GO:0048443 GO:0048444 GO:0048445 GO:0048448 GO:0048449 GO:0048455 GO:0048457 GO:0048459 GO:0048461 GO:0048462 GO:0048466 GO:0048467 GO:0048481 GO:0048507 GO:0048509 GO:0048518 GO:0048522 GO:0048532 GO:0048589 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048832 GO:0048833 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0080060 GO:0080090 GO:0080112 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

234

Amino Acids

27.22

Weight (kDa)

8.73

Isoelectric Point (pI)

57.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	6.8e-25	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	83 - 178	9e-23	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009666)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g11290 FvH4_3g11290 FvH4_3g11290 FvH4_3g11290 FvH4_7g28690 FvH4_7g28690 FvH4_7g28690
malus_domestica	MD01G1192400.v1.1
prunus_persica	Prupe.2G287000_v2.0.a1 Prupe.2G287000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0376191
rosa_laevigata	RLG00000026622
rosa_multiflora	Rmu_ssc0000116.1_g000053
rosa_roxburghii	Rroxscaffold_4G00282320
rosa_rugosa	Rorug01G0394300
rosa_samantha	Rh1AG405900 Rh1BG369600 Rh1CG382300 Rh1CG382500 Rh1DG399200 Rh1DG399400
rosa_wichuraiana	Rw1G036010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	78
Acc65I	GGTACC	1 cut(s)	207
AccB1I	GGYRCC	1 cut(s)	207
AccII	CGCG	2 cut(s)	153, 652
AciI	CCGC	2 cut(s)	151, 153
AcsI	RAATTY	1 cut(s)	195
AcuI	CTGAAG	1 cut(s)	293
AfaI	GTAC	1 cut(s)	209
AfiI	CCNNNNNNNGG	1 cut(s)	157
AgeI	ACCGGT	1 cut(s)	204
AgsI	TTSAA	7 cut(s)	25, 88, 289, 347, 503, 536, 584
AjnI	CCWGG	2 cut(s)	430, 592
AluBI	AGCT	9 cut(s)	95, 103, 219, 388, 410, 520, 532, 614, 623
AluI	AGCT	9 cut(s)	95, 103, 219, 388, 410, 520, 532, 614, 623
Alw21I	GWGCWC	2 cut(s)	105, 114
Alw26I	GTCTC	2 cut(s)	145, 283
ApeKI	GCWGC	3 cut(s)	219, 517, 614
ApoI	RAATTY	1 cut(s)	195
AseI	ATTAAT	1 cut(s)	578
AsiGI	ACCGGT	1 cut(s)	204
Asp700I	GAANNNNTTC	4 cut(s)	306, 351, 400, 693
Asp718I	GGTACC	1 cut(s)	207
AspLEI	GCGC	1 cut(s)	654
AsuII	TTCGAA	1 cut(s)	65
BanI	GGYRCC	1 cut(s)	207
BanII	GRGCYC	2 cut(s)	105, 681
BbsI	GAAGAC	2 cut(s)	154, 428
Bbv12I	GWGCWC	2 cut(s)	105, 114
BbvI	GCAGC	3 cut(s)	206, 529, 601
BceAI	ACGGC	1 cut(s)	89
BcgI	CGANNNNNNTGC	2 cut(s)	145, 179
BciT130I	CCWGG	2 cut(s)	432, 594
BcoDI	GTCTC	2 cut(s)	145, 283
BfaI	CTAG	2 cut(s)	411, 642
BfmI	CTRYAG	1 cut(s)	609
BglII	AGATCT	1 cut(s)	340
BisI	GCNGC	5 cut(s)	151, 154, 220, 518, 615
BlsI	GCNGC	5 cut(s)	152, 155, 221, 519, 616
Bme1390I	CCNGG	2 cut(s)	432, 594
BmiI	GGNNCC	1 cut(s)	209
BmrFI	CCNGG	2 cut(s)	432, 594
BmsI	GCATC	2 cut(s)	109, 438
BpiI	GAAGAC	2 cut(s)	154, 428
BpmI	CTGGAG	2 cut(s)	130, 639
Bpu10I	CCTNAGC	1 cut(s)	96
Bpu14I	TTCGAA	1 cut(s)	65
BpuEI	CTTGAG	2 cut(s)	265, 398
BsaJI	CCNNGG	1 cut(s)	151
BsaWI	WCCGGW	1 cut(s)	204
Bsc4I	CCNNNNNNNGG	1 cut(s)	157
Bse118I	RCCGGY	2 cut(s)	48, 204
BseBI	CCWGG	2 cut(s)	432, 594
BseDI	CCNNGG	1 cut(s)	151
BseLI	CCNNNNNNNGG	1 cut(s)	157
BseMII	CTCAG	2 cut(s)	110, 519
BseRI	GAGGAG	2 cut(s)	133, 612
BseXI	GCAGC	3 cut(s)	206, 529, 601
Bsh1236I	CGCG	2 cut(s)	153, 652
BshNI	GGYRCC	1 cut(s)	207
BshTI	ACCGGT	1 cut(s)	204
BsiHKAI	GWGCWC	2 cut(s)	105, 114
BsiSI	CCGG	2 cut(s)	49, 205
BslI	CCNNNNNNNGG	1 cut(s)	157
BsmAI	GTCTC	2 cut(s)	145, 283
BsmBI	CGTCTC	1 cut(s)	145
Bsp119I	TTCGAA	1 cut(s)	65
Bsp1286I	GDGCHC	3 cut(s)	105, 114, 681
Bsp143I	GATC	3 cut(s)	340, 463, 496
BspACI	CCGC	2 cut(s)	151, 153
BspCNI	CTCAG	2 cut(s)	109, 520
BspFNI	CGCG	2 cut(s)	153, 652
BspHI	TCATGA	1 cut(s)	628
BspLI	GGNNCC	1 cut(s)	209
BspT104I	TTCGAA	1 cut(s)	65
BspT107I	GGYRCC	1 cut(s)	207
BsrFI	RCCGGY	2 cut(s)	48, 204
BssAI	RCCGGY	2 cut(s)	48, 204
BssECI	CCNNGG	1 cut(s)	151
BssMI	GATC	3 cut(s)	340, 463, 496
Bst2UI	CCWGG	2 cut(s)	432, 594
Bst4CI	ACNGT	1 cut(s)	610
Bst6I	CTCTTC	3 cut(s)	20, 312, 498
BstBI	TTCGAA	1 cut(s)	65
BstC8I	GCNNGC	1 cut(s)	175
BstDEI	CTNAG	3 cut(s)	96, 246, 528
BstDSI	CCRYGG	1 cut(s)	151
BstFNI	CGCG	2 cut(s)	153, 652
BstHHI	GCGC	1 cut(s)	654
BstKTI	GATC	3 cut(s)	343, 466, 499
BstMAI	GTCTC	2 cut(s)	145, 283
BstMBI	GATC	3 cut(s)	340, 463, 496
BstMWI	GCNNNNNNNGC	3 cut(s)	109, 128, 620
BstNI	CCWGG	2 cut(s)	432, 594
BstSCI	CCNGG	2 cut(s)	430, 592
BstSFI	CTRYAG	1 cut(s)	609
BstUI	CGCG	2 cut(s)	153, 652
BstV1I	GCAGC	3 cut(s)	206, 529, 601
BstV2I	GAAGAC	2 cut(s)	154, 428
BstX2I	RGATCY	1 cut(s)	340
BstYI	RGATCY	1 cut(s)	340
BtgI	CCRYGG	1 cut(s)	151
BtgZI	GCGATG	1 cut(s)	132
Cac8I	GCNNGC	1 cut(s)	175
CciI	TCATGA	1 cut(s)	628
CfoI	GCGC	1 cut(s)	654
Cfr10I	RCCGGY	2 cut(s)	48, 204
Cfr42I	CCGCGG	1 cut(s)	154
Csp6I	GTAC	1 cut(s)	208
CspAI	ACCGGT	1 cut(s)	204
CviAII	CATG	1 cut(s)	629
CviQI	GTAC	1 cut(s)	208
DdeI	CTNAG	3 cut(s)	96, 246, 528
DpnI	GATC	3 cut(s)	342, 465, 498
DpnII	GATC	3 cut(s)	340, 463, 496
DrdI	GACNNNNNNGTC	1 cut(s)	78
DseDI	GACNNNNNNGTC	1 cut(s)	78
Eam1104I	CTCTTC	3 cut(s)	20, 312, 498
EarI	CTCTTC	3 cut(s)	20, 312, 498
Ecl136II	GAGCTC	1 cut(s)	103
Eco24I	GRGCYC	2 cut(s)	105, 681
Eco53kI	GAGCTC	1 cut(s)	103
Eco57I	CTGAAG	1 cut(s)	293
EcoICRI	GAGCTC	1 cut(s)	103
EcoRII	CCWGG	2 cut(s)	430, 592
EcoT38I	GRGCYC	2 cut(s)	105, 681
Esp3I	CGTCTC	1 cut(s)	145
FaeI	CATG	1 cut(s)	632
FalI	AAGNNNNNCTT	2 cut(s)	117, 149
FatI	CATG	1 cut(s)	628
Fnu4HI	GCNGC	5 cut(s)	151, 154, 220, 518, 615
FriOI	GRGCYC	2 cut(s)	105, 681
Fsp4HI	GCNGC	5 cut(s)	151, 154, 220, 518, 615
FspBI	CTAG	2 cut(s)	411, 642
GlaI	GCGC	1 cut(s)	653
GluI	GCNGC	5 cut(s)	151, 154, 220, 518, 615
GsuI	CTGGAG	2 cut(s)	130, 639
HapII	CCGG	2 cut(s)	49, 205
HhaI	GCGC	1 cut(s)	654
Hin1II	CATG	1 cut(s)	632
Hin6I	GCGC	1 cut(s)	652
HinP1I	GCGC	1 cut(s)	652
HinfI	GANTC	2 cut(s)	30, 302
HpaII	CCGG	2 cut(s)	49, 205
Hpy166II	GTNNAC	1 cut(s)	190
Hpy188I	TCNGA	2 cut(s)	360, 529
Hpy188III	TCNNGA	9 cut(s)	34, 88, 98, 272, 282, 344, 377, 500, 629
Hpy8I	GTNNAC	1 cut(s)	190
Hpy99I	CGWCG	2 cut(s)	75, 591
HpyCH4III	ACNGT	1 cut(s)	610
HpyCH4IV	ACGT	1 cut(s)	586
HpyCH4V	TGCA	3 cut(s)	445, 451, 659
HpyF10VI	GCNNNNNNNGC	3 cut(s)	109, 128, 620
HpyF3I	CTNAG	3 cut(s)	96, 246, 528
HpySE526I	ACGT	1 cut(s)	586
Hsp92II	CATG	1 cut(s)	632
HspAI	GCGC	1 cut(s)	652
KpnI	GGTACC	1 cut(s)	211
KspI	CCGCGG	1 cut(s)	154
Kzo9I	GATC	3 cut(s)	340, 463, 496
LmnI	GCTCC	2 cut(s)	100, 620
Lsp1109I	GCAGC	3 cut(s)	206, 529, 601
LweI	GCATC	2 cut(s)	109, 438
MaeI	CTAG	2 cut(s)	411, 642
MaeII	ACGT	1 cut(s)	586
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	3 cut(s)	342, 465, 498
MboI	GATC	3 cut(s)	340, 463, 496
MboII	GAAGA	7 cut(s)	37, 154, 299, 350, 433, 515, 548
MflI	RGATCY	1 cut(s)	340
MhlI	GDGCHC	3 cut(s)	105, 114, 681
MluCI	AATT	5 cut(s)	20, 195, 365, 467, 579
MnlI	CCTC	3 cut(s)	154, 238, 590
MroXI	GAANNNNTTC	4 cut(s)	306, 351, 400, 693
MseI	TTAA	1 cut(s)	578
MspA1I	CMGCKG	1 cut(s)	153
MspI	CCGG	2 cut(s)	49, 205
MspR9I	CCNGG	2 cut(s)	432, 594
MvaI	CCWGG	2 cut(s)	432, 594
MvnI	CGCG	2 cut(s)	153, 652
MwoI	GCNNNNNNNGC	3 cut(s)	109, 128, 620
NdeII	GATC	3 cut(s)	340, 463, 496
NlaIII	CATG	1 cut(s)	632
NlaIV	GGNNCC	1 cut(s)	209
NmuCI	GTSAC	1 cut(s)	55
NspV	TTCGAA	1 cut(s)	65
PagI	TCATGA	1 cut(s)	628
PcsI	WCGNNNNNNNCGW	1 cut(s)	189
PdmI	GAANNNNTTC	4 cut(s)	306, 351, 400, 693
PfeI	GAWTC	2 cut(s)	30, 302
PfoI	TCCNGGA	1 cut(s)	592
PinAI	ACCGGT	1 cut(s)	204
PkrI	GCNGC	5 cut(s)	152, 155, 221, 519, 616
PshBI	ATTAAT	1 cut(s)	578
Psp124BI	GAGCTC	1 cut(s)	105
Psp6I	CCWGG	2 cut(s)	430, 592
PspGI	CCWGG	2 cut(s)	430, 592
PspN4I	GGNNCC	1 cut(s)	209
PsuI	RGATCY	1 cut(s)	340
RsaI	GTAC	1 cut(s)	209
RsaNI	GTAC	1 cut(s)	208
SacI	GAGCTC	1 cut(s)	105
SacII	CCGCGG	1 cut(s)	154
SaqAI	TTAA	1 cut(s)	578
SatI	GCNGC	5 cut(s)	151, 154, 220, 518, 615
Sau3AI	GATC	3 cut(s)	340, 463, 496
ScrFI	CCNGG	2 cut(s)	432, 594
SduI	GDGCHC	3 cut(s)	105, 114, 681
SfaNI	GCATC	2 cut(s)	109, 438
SfcI	CTRYAG	1 cut(s)	609
Sfr303I	CCGCGG	1 cut(s)	154
SfuI	TTCGAA	1 cut(s)	65
SgrBI	CCGCGG	1 cut(s)	154
SmlI	CTYRAG	2 cut(s)	280, 377
SmoI	CTYRAG	2 cut(s)	280, 377
Sse9I	AATT	5 cut(s)	20, 195, 365, 467, 579
SsiI	CCGC	2 cut(s)	151, 153
SspMI	CTAG	2 cut(s)	411, 642
SstI	GAGCTC	1 cut(s)	105
StyD4I	CCNGG	2 cut(s)	430, 592
TaaI	ACNGT	1 cut(s)	610
TaiI	ACGT	1 cut(s)	589
TaqI	TCGA	3 cut(s)	33, 65, 165
TaqII	GACCGA	1 cut(s)	68
TasI	AATT	5 cut(s)	20, 195, 365, 467, 579
TauI	GCSGC	2 cut(s)	153, 156
TfiI	GAWTC	2 cut(s)	30, 302
Tru1I	TTAA	1 cut(s)	578
Tru9I	TTAA	1 cut(s)	578
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	3 cut(s)	219, 517, 614
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	5 cut(s)	267, 315, 585, 645, 702
VspI	ATTAAT	1 cut(s)	578
XapI	RAATTY	1 cut(s)	195
XmnI	GAANNNNTTC	4 cut(s)	306, 351, 400, 693
XspI	CTAG	2 cut(s)	411, 642

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.