Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0009666

Physical Location & Seq

Genomic Coordinates Forward (+)

65255119 .. 65265182

Gene Structure 10064 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG382500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGGGAGAGGGAAAGTGGAATTGAAGAGAATCGAGAATAAGATAAACCGGCAAGTGACCTTTTCGAAACGGCGGCTCGGTCTGTTCAAGAAAGCTCAGGAGCTCTCTGTGCTCTGCGATGCCCAAGTTGCCCTTATCGTCTCCTGCAGCCGCGGCAAGGTCTTCGACTTTGCCAGCACCAACGATGTAAACGAAATTCTCAACCGGTACCAACAAAGCTGCTATTCCTCACAAGACAATGTTGCTGAGAATGAAACACAGAACTTATATCAAGAAGTCTCAAGATTGAAAGTCAAATATGAATCTCTTCAGCGTTCGCAAAGGCATTTTCTTGGAGAAGATCTTGAAAAACTTCGTCTGAAAGAATTGGAAAATCTTGAGAAACAGCTTGACAGAACTCTTTCACAAGCTAGACAAAGGAAGATTCAGATGATGTTAGATCAATTAGAAGCACTAGGCAGAAAGGAGAATGATCTTGAAGAGATACATAAGCAGCTAAAATCTGAGCTTGAAGAAAGGGAAAAACATAGCGACAATGATGATGATGAAGCATTAATTCAAGGTCGTCTAGGAGGAGAGCCTACTGTAGCTGCTGGAGCTTCTCATGAAAACATTTCTACTAAAACGCGCTCTGCATACACTTATCAGCAAGAGCCCACCTTACACTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009553 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0010016 GO:0010022 GO:0010073 GO:0010093 GO:0010094 GO:0010154 GO:0010468 GO:0010556 GO:0010557 GO:0010582 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0035670 GO:0040007 GO:0045893 GO:0045935 GO:0046983 GO:0048229 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048439 GO:0048440 GO:0048443 GO:0048444 GO:0048445 GO:0048448 GO:0048449 GO:0048455 GO:0048457 GO:0048459 GO:0048461 GO:0048462 GO:0048466 GO:0048467 GO:0048481 GO:0048507 GO:0048509 GO:0048518 GO:0048522 GO:0048532 GO:0048589 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048832 GO:0048833 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0080060 GO:0080090 GO:0080112 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

223

Amino Acids

25.82

Weight (kDa)

6.56

Isoelectric Point (pI)

48.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	7e-24	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	83 - 170	3.9e-24	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009666)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g11290 FvH4_3g11290 FvH4_3g11290 FvH4_3g11290 FvH4_7g28690 FvH4_7g28690 FvH4_7g28690
malus_domestica	MD01G1192400.v1.1
prunus_persica	Prupe.2G287000_v2.0.a1 Prupe.2G287000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0376191
rosa_laevigata	RLG00000026622
rosa_multiflora	Rmu_ssc0000116.1_g000053
rosa_roxburghii	Rroxscaffold_4G00282320
rosa_rugosa	Rorug01G0394300
rosa_samantha	Rh1AG405900 Rh1BG369600 Rh1CG382300 Rh1CG382500 Rh1DG399200 Rh1DG399400
rosa_wichuraiana	Rw1G036010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	207
AccB1I	GGYRCC	1 cut(s)	207
AccII	CGCG	2 cut(s)	153, 628
AciI	CCGC	3 cut(s)	73, 151, 153
AcsI	RAATTY	1 cut(s)	195
AcuI	CTGAAG	1 cut(s)	293
AfaI	GTAC	1 cut(s)	209
AfiI	CCNNNNNNNGG	1 cut(s)	157
AgeI	ACCGGT	1 cut(s)	204
AgsI	TTSAA	7 cut(s)	25, 88, 289, 347, 479, 512, 560
AluBI	AGCT	9 cut(s)	95, 103, 219, 388, 410, 496, 508, 590, 599
AluI	AGCT	9 cut(s)	95, 103, 219, 388, 410, 496, 508, 590, 599
Alw21I	GWGCWC	2 cut(s)	105, 114
Alw26I	GTCTC	2 cut(s)	145, 283
ApeKI	GCWGC	4 cut(s)	147, 219, 493, 590
ApoI	RAATTY	1 cut(s)	195
AseI	ATTAAT	1 cut(s)	554
AsiGI	ACCGGT	1 cut(s)	204
Asp700I	GAANNNNTTC	3 cut(s)	306, 351, 400
Asp718I	GGTACC	1 cut(s)	207
AspLEI	GCGC	1 cut(s)	630
AsuII	TTCGAA	1 cut(s)	65
BanI	GGYRCC	1 cut(s)	207
BanII	GRGCYC	2 cut(s)	105, 657
BbsI	GAAGAC	1 cut(s)	154
Bbv12I	GWGCWC	2 cut(s)	105, 114
BbvI	GCAGC	4 cut(s)	159, 206, 505, 577
BceAI	ACGGC	1 cut(s)	86
BcgI	CGANNNNNNTGC	2 cut(s)	145, 179
BcoDI	GTCTC	2 cut(s)	145, 283
BfaI	CTAG	3 cut(s)	411, 455, 569
BfmI	CTRYAG	2 cut(s)	145, 585
BglII	AGATCT	1 cut(s)	340
BisI	GCNGC	7 cut(s)	74, 148, 151, 154, 220, 494, 591
BlsI	GCNGC	7 cut(s)	75, 149, 152, 155, 221, 495, 592
BmiI	GGNNCC	1 cut(s)	209
BmsI	GCATC	1 cut(s)	109
BpiI	GAAGAC	1 cut(s)	154
BpmI	CTGGAG	1 cut(s)	615
Bpu10I	CCTNAGC	1 cut(s)	96
Bpu14I	TTCGAA	1 cut(s)	65
BpuEI	CTTGAG	2 cut(s)	265, 398
BsaJI	CCNNGG	1 cut(s)	151
BsaWI	WCCGGW	1 cut(s)	204
Bsc4I	CCNNNNNNNGG	1 cut(s)	157
Bse118I	RCCGGY	2 cut(s)	48, 204
BseDI	CCNNGG	1 cut(s)	151
BseLI	CCNNNNNNNGG	1 cut(s)	157
BseMII	CTCAG	3 cut(s)	110, 237, 495
BseRI	GAGGAG	1 cut(s)	588
BseXI	GCAGC	4 cut(s)	159, 206, 505, 577
Bsh1236I	CGCG	2 cut(s)	153, 628
BshNI	GGYRCC	1 cut(s)	207
BshTI	ACCGGT	1 cut(s)	204
BsiHKAI	GWGCWC	2 cut(s)	105, 114
BsiSI	CCGG	2 cut(s)	49, 205
BslI	CCNNNNNNNGG	1 cut(s)	157
BsmAI	GTCTC	2 cut(s)	145, 283
BsmBI	CGTCTC	1 cut(s)	145
Bsp119I	TTCGAA	1 cut(s)	65
Bsp1286I	GDGCHC	3 cut(s)	105, 114, 657
Bsp143I	GATC	3 cut(s)	340, 439, 472
BspACI	CCGC	3 cut(s)	73, 151, 153
BspCNI	CTCAG	3 cut(s)	109, 238, 496
BspFNI	CGCG	2 cut(s)	153, 628
BspHI	TCATGA	1 cut(s)	604
BspLI	GGNNCC	1 cut(s)	209
BspMAI	CTGCAG	1 cut(s)	149
BspT104I	TTCGAA	1 cut(s)	65
BspT107I	GGYRCC	1 cut(s)	207
BsrFI	RCCGGY	2 cut(s)	48, 204
BssAI	RCCGGY	2 cut(s)	48, 204
BssECI	CCNNGG	1 cut(s)	151
BssMI	GATC	3 cut(s)	340, 439, 472
Bst4CI	ACNGT	1 cut(s)	586
Bst6I	CTCTTC	3 cut(s)	20, 312, 474
BstBI	TTCGAA	1 cut(s)	65
BstC8I	GCNNGC	1 cut(s)	175
BstDEI	CTNAG	3 cut(s)	96, 246, 504
BstDSI	CCRYGG	1 cut(s)	151
BstFNI	CGCG	2 cut(s)	153, 628
BstHHI	GCGC	1 cut(s)	630
BstKTI	GATC	3 cut(s)	343, 442, 475
BstMAI	GTCTC	2 cut(s)	145, 283
BstMBI	GATC	3 cut(s)	340, 439, 472
BstMWI	GCNNNNNNNGC	4 cut(s)	109, 128, 153, 596
BstSFI	CTRYAG	2 cut(s)	145, 585
BstUI	CGCG	2 cut(s)	153, 628
BstV1I	GCAGC	4 cut(s)	159, 206, 505, 577
BstV2I	GAAGAC	1 cut(s)	154
BstX2I	RGATCY	1 cut(s)	340
BstYI	RGATCY	1 cut(s)	340
BtgI	CCRYGG	1 cut(s)	151
BtgZI	GCGATG	1 cut(s)	132
Cac8I	GCNNGC	1 cut(s)	175
CciI	TCATGA	1 cut(s)	604
CfoI	GCGC	1 cut(s)	630
Cfr10I	RCCGGY	2 cut(s)	48, 204
Cfr42I	CCGCGG	1 cut(s)	154
Csp6I	GTAC	1 cut(s)	208
CspAI	ACCGGT	1 cut(s)	204
CviAII	CATG	1 cut(s)	605
CviQI	GTAC	1 cut(s)	208
DdeI	CTNAG	3 cut(s)	96, 246, 504
DpnI	GATC	3 cut(s)	342, 441, 474
DpnII	GATC	3 cut(s)	340, 439, 472
Eam1104I	CTCTTC	3 cut(s)	20, 312, 474
EarI	CTCTTC	3 cut(s)	20, 312, 474
Ecl136II	GAGCTC	1 cut(s)	103
Eco24I	GRGCYC	2 cut(s)	105, 657
Eco53kI	GAGCTC	1 cut(s)	103
Eco57I	CTGAAG	1 cut(s)	293
EcoICRI	GAGCTC	1 cut(s)	103
EcoT38I	GRGCYC	2 cut(s)	105, 657
Esp3I	CGTCTC	1 cut(s)	145
FaeI	CATG	1 cut(s)	608
FaiI	YATR	7 cut(s)	268, 300, 489, 528, 606, 637, 670
FalI	AAGNNNNNCTT	2 cut(s)	117, 149
FatI	CATG	1 cut(s)	604
Fnu4HI	GCNGC	7 cut(s)	74, 148, 151, 154, 220, 494, 591
FriOI	GRGCYC	2 cut(s)	105, 657
Fsp4HI	GCNGC	7 cut(s)	74, 148, 151, 154, 220, 494, 591
FspBI	CTAG	3 cut(s)	411, 455, 569
GlaI	GCGC	1 cut(s)	629
GluI	GCNGC	7 cut(s)	74, 148, 151, 154, 220, 494, 591
GsuI	CTGGAG	1 cut(s)	615
HapII	CCGG	2 cut(s)	49, 205
HhaI	GCGC	1 cut(s)	630
Hin1II	CATG	1 cut(s)	608
Hin6I	GCGC	1 cut(s)	628
HinP1I	GCGC	1 cut(s)	628
HinfI	GANTC	3 cut(s)	30, 302, 424
HpaII	CCGG	2 cut(s)	49, 205
Hpy166II	GTNNAC	1 cut(s)	190
Hpy188I	TCNGA	3 cut(s)	360, 429, 505
Hpy188III	TCNNGA	9 cut(s)	34, 88, 98, 272, 282, 344, 377, 476, 605
Hpy8I	GTNNAC	1 cut(s)	190
HpyCH4III	ACNGT	1 cut(s)	586
HpyCH4V	TGCA	2 cut(s)	147, 635
HpyF10VI	GCNNNNNNNGC	4 cut(s)	109, 128, 153, 596
HpyF3I	CTNAG	3 cut(s)	96, 246, 504
Hsp92II	CATG	1 cut(s)	608
HspAI	GCGC	1 cut(s)	628
KpnI	GGTACC	1 cut(s)	211
KspI	CCGCGG	1 cut(s)	154
Kzo9I	GATC	3 cut(s)	340, 439, 472
LmnI	GCTCC	2 cut(s)	100, 596
LpnPI	CCDG	6 cut(s)	62, 83, 157, 187, 218, 579
Lsp1109I	GCAGC	4 cut(s)	159, 206, 505, 577
LweI	GCATC	1 cut(s)	109
MaeI	CTAG	3 cut(s)	411, 455, 569
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	3 cut(s)	342, 441, 474
MboI	GATC	3 cut(s)	340, 439, 472
MboII	GAAGA	7 cut(s)	37, 154, 299, 350, 433, 491, 524
MflI	RGATCY	1 cut(s)	340
MhlI	GDGCHC	3 cut(s)	105, 114, 657
MluCI	AATT	5 cut(s)	20, 195, 365, 443, 555
MnlI	CCTC	2 cut(s)	238, 566
MroXI	GAANNNNTTC	3 cut(s)	306, 351, 400
MseI	TTAA	1 cut(s)	554
MspA1I	CMGCKG	1 cut(s)	153
MspI	CCGG	2 cut(s)	49, 205
MvnI	CGCG	2 cut(s)	153, 628
MwoI	GCNNNNNNNGC	4 cut(s)	109, 128, 153, 596
NdeII	GATC	3 cut(s)	340, 439, 472
NlaIII	CATG	1 cut(s)	608
NlaIV	GGNNCC	1 cut(s)	209
NmuCI	GTSAC	1 cut(s)	55
NspV	TTCGAA	1 cut(s)	65
PagI	TCATGA	1 cut(s)	604
PcsI	WCGNNNNNNNCGW	1 cut(s)	189
PdmI	GAANNNNTTC	3 cut(s)	306, 351, 400
PfeI	GAWTC	3 cut(s)	30, 302, 424
PinAI	ACCGGT	1 cut(s)	204
PkrI	GCNGC	7 cut(s)	75, 149, 152, 155, 221, 495, 592
PshBI	ATTAAT	1 cut(s)	554
Psp124BI	GAGCTC	1 cut(s)	105
PspN4I	GGNNCC	1 cut(s)	209
PstI	CTGCAG	1 cut(s)	149
PsuI	RGATCY	1 cut(s)	340
RsaI	GTAC	1 cut(s)	209
RsaNI	GTAC	1 cut(s)	208
SacI	GAGCTC	1 cut(s)	105
SacII	CCGCGG	1 cut(s)	154
SaqAI	TTAA	1 cut(s)	554
SatI	GCNGC	7 cut(s)	74, 148, 151, 154, 220, 494, 591
Sau3AI	GATC	3 cut(s)	340, 439, 472
SduI	GDGCHC	3 cut(s)	105, 114, 657
SfaNI	GCATC	1 cut(s)	109
SfcI	CTRYAG	2 cut(s)	145, 585
Sfr303I	CCGCGG	1 cut(s)	154
SfuI	TTCGAA	1 cut(s)	65
SgrBI	CCGCGG	1 cut(s)	154
SmlI	CTYRAG	2 cut(s)	280, 377
SmoI	CTYRAG	2 cut(s)	280, 377
Sse9I	AATT	5 cut(s)	20, 195, 365, 443, 555
SsiI	CCGC	3 cut(s)	73, 151, 153
SspMI	CTAG	3 cut(s)	411, 455, 569
SstI	GAGCTC	1 cut(s)	105
TaaI	ACNGT	1 cut(s)	586
TaqI	TCGA	3 cut(s)	33, 65, 165
TaqII	GACCGA	1 cut(s)	68
TasI	AATT	5 cut(s)	20, 195, 365, 443, 555
TauI	GCSGC	3 cut(s)	76, 153, 156
TfiI	GAWTC	3 cut(s)	30, 302, 424
Tru1I	TTAA	1 cut(s)	554
Tru9I	TTAA	1 cut(s)	554
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	4 cut(s)	147, 219, 493, 590
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	4 cut(s)	267, 315, 561, 621
VspI	ATTAAT	1 cut(s)	554
XapI	RAATTY	1 cut(s)	195
XmnI	GAANNNNTTC	3 cut(s)	306, 351, 400
XspI	CTAG	3 cut(s)	411, 455, 569

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.