Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0009666

Physical Location & Seq

Genomic Coordinates Forward (+)

21239173 .. 21252494

Gene Structure 13322 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g28690.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGGGAGGGGGAAAGTGGTAATGAAGAGAATCGAGAACAAGGCAAACCGGCAAGTTACGTTTTCGAAACGACGGCTGGGTCTGTTCAAGAAAGCTCAGGAGCTCTCTGTGCTCTGTGATGCCCAAGTTGCCCTTATCGTCTTCTGCAGCTGCGGCAAGCTCTTCGACTTTGCCAGCACCAACGATGTAAACGAAATCCTCAACCGCTACCACCAATGTTGCTATTCCTCACAAGACAATGTTGCTGAGAGTGAAAAACAGAACTTATATCAAGAGGTCTCAAGATTGAAAGTCAGATATGAATCTCTTCAGAGTTGGCAAAGACATTTTCTTGGAGAAGATCTTGACAAACTTCGTCTGAAAGAACTGGAACATCTAGAGAAACAGCTTGACAGAACTCTTTCACAAGCTAGAGAAAGAAAGAAGAGTGATCTTGAAGAGATAAAAAAGCAGCTCGAATCTGAGCTTGAAGAAAGTGAAAAACATGATGACAATACTGATGAGGATGATGAAGAAGATGAAGCACTAATTCTAGGTCGTCCGGGAGGACAGCCAACTGTAGCTGCTGGAGCTTCTCATGAGAACATTTCTACTAAAACGCCCTCTGCAAATGCTAATCAAGAGCCTACCTTATGCTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009553 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0010016 GO:0010022 GO:0010073 GO:0010093 GO:0010094 GO:0010154 GO:0010468 GO:0010556 GO:0010557 GO:0010582 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0035670 GO:0040007 GO:0045893 GO:0045935 GO:0046983 GO:0048229 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048439 GO:0048440 GO:0048443 GO:0048444 GO:0048445 GO:0048448 GO:0048449 GO:0048455 GO:0048457 GO:0048459 GO:0048461 GO:0048462 GO:0048466 GO:0048467 GO:0048481 GO:0048507 GO:0048509 GO:0048518 GO:0048522 GO:0048532 GO:0048589 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048832 GO:0048833 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0080060 GO:0080090 GO:0080112 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

214

Amino Acids

24.4

Weight (kDa)

5.41

Isoelectric Point (pI)

52.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	2.2e-25	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	83 - 154	2.3e-15	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009666)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g11290 FvH4_3g11290 FvH4_3g11290 FvH4_3g11290 FvH4_7g28690 FvH4_7g28690 FvH4_7g28690
malus_domestica	MD01G1192400.v1.1
prunus_persica	Prupe.2G287000_v2.0.a1 Prupe.2G287000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0376191
rosa_laevigata	RLG00000026622
rosa_multiflora	Rmu_ssc0000116.1_g000053
rosa_roxburghii	Rroxscaffold_4G00282320
rosa_rugosa	Rorug01G0394300
rosa_samantha	Rh1AG405900 Rh1BG369600 Rh1CG382300 Rh1CG382500 Rh1DG399200 Rh1DG399400
rosa_wichuraiana	Rw1G036010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	78
AciI	CCGC	2 cut(s)	153, 205
AcuI	CTGAAG	1 cut(s)	293
AgsI	TTSAA	4 cut(s)	88, 289, 437, 470
Alw21I	GWGCWC	2 cut(s)	105, 114
Alw26I	GTCTC	1 cut(s)	283
ApeKI	GCWGC	4 cut(s)	147, 150, 451, 563
Asp700I	GAANNNNTTC	2 cut(s)	306, 400
AsuC2I	CCSGG	1 cut(s)	543
AsuII	TTCGAA	1 cut(s)	65
BanII	GRGCYC	1 cut(s)	105
BbsI	GAAGAC	1 cut(s)	133
Bbv12I	GWGCWC	2 cut(s)	105, 114
BbvI	GCAGC	4 cut(s)	137, 159, 463, 550
BceAI	ACGGC	1 cut(s)	89
BcgI	CGANNNNNNTGC	2 cut(s)	145, 179
BcnI	CCSGG	1 cut(s)	543
BcoDI	GTCTC	1 cut(s)	283
BfaI	CTAG	3 cut(s)	377, 411, 533
BfmI	CTRYAG	2 cut(s)	145, 558
BglII	AGATCT	1 cut(s)	340
BisI	GCNGC	5 cut(s)	148, 151, 154, 452, 564
BlsI	GCNGC	5 cut(s)	149, 152, 155, 453, 565
Bme1390I	CCNGG	1 cut(s)	543
BmrFI	CCNGG	1 cut(s)	543
BmsI	GCATC	1 cut(s)	109
BpiI	GAAGAC	1 cut(s)	133
BpmI	CTGGAG	1 cut(s)	588
Bpu10I	CCTNAGC	1 cut(s)	96
Bpu14I	TTCGAA	1 cut(s)	65
BpuEI	CTTGAG	1 cut(s)	265
BpuMI	CCSGG	1 cut(s)	543
BsaBI	GATNNNNATC	1 cut(s)	301
BsaI	GGTCTC	1 cut(s)	283
Bse118I	RCCGGY	1 cut(s)	48
Bse1I	ACTGG	1 cut(s)	372
Bse8I	GATNNNNATC	1 cut(s)	301
BseGI	GGATG	1 cut(s)	511
BseJI	GATNNNNATC	1 cut(s)	301
BseMII	CTCAG	3 cut(s)	110, 237, 453
BseNI	ACTGG	1 cut(s)	372
BseXI	GCAGC	4 cut(s)	137, 159, 463, 550
BseYI	CCCAGC	1 cut(s)	76
BsiHKAI	GWGCWC	2 cut(s)	105, 114
BsiSI	CCGG	2 cut(s)	49, 542
BsmAI	GTCTC	1 cut(s)	283
Bso31I	GGTCTC	1 cut(s)	283
Bsp119I	TTCGAA	1 cut(s)	65
Bsp1286I	GDGCHC	2 cut(s)	105, 114
Bsp143I	GATC	2 cut(s)	340, 430
BspACI	CCGC	2 cut(s)	153, 205
BspCNI	CTCAG	3 cut(s)	109, 238, 454
BspHI	TCATGA	1 cut(s)	577
BspMAI	CTGCAG	1 cut(s)	149
BspQI	GCTCTTC	1 cut(s)	167
BspT104I	TTCGAA	1 cut(s)	65
BspTNI	GGTCTC	1 cut(s)	283
BsrFI	RCCGGY	1 cut(s)	48
BsrI	ACTGG	1 cut(s)	372
BssAI	RCCGGY	1 cut(s)	48
BssMI	GATC	2 cut(s)	340, 430
Bst4CI	ACNGT	1 cut(s)	559
Bst6I	CTCTTC	5 cut(s)	20, 167, 312, 419, 432
BstBI	TTCGAA	1 cut(s)	65
BstC8I	GCNNGC	2 cut(s)	158, 175
BstDEI	CTNAG	3 cut(s)	96, 246, 462
BstF5I	GGATG	1 cut(s)	511
BstKTI	GATC	2 cut(s)	343, 433
BstMAI	GTCTC	1 cut(s)	283
BstMBI	GATC	2 cut(s)	340, 430
BstMWI	GCNNNNNNNGC	4 cut(s)	109, 128, 153, 569
BstSCI	CCNGG	1 cut(s)	541
BstSFI	CTRYAG	2 cut(s)	145, 558
BstV1I	GCAGC	4 cut(s)	137, 159, 463, 550
BstV2I	GAAGAC	1 cut(s)	133
BstX2I	RGATCY	1 cut(s)	340
BstYI	RGATCY	1 cut(s)	340
BtsCI	GGATG	1 cut(s)	511
Cac8I	GCNNGC	2 cut(s)	158, 175
CciI	TCATGA	1 cut(s)	577
Cfr10I	RCCGGY	1 cut(s)	48
CspCI	CAANNNNNGTGG	2 cut(s)	200, 235
CviAII	CATG	2 cut(s)	485, 578
DdeI	CTNAG	3 cut(s)	96, 246, 462
DpnI	GATC	2 cut(s)	342, 432
DpnII	GATC	2 cut(s)	340, 430
DrdI	GACNNNNNNGTC	1 cut(s)	78
DseDI	GACNNNNNNGTC	1 cut(s)	78
Eam1104I	CTCTTC	5 cut(s)	20, 167, 312, 419, 432
EarI	CTCTTC	5 cut(s)	20, 167, 312, 419, 432
Ecl136II	GAGCTC	1 cut(s)	103
Eco24I	GRGCYC	1 cut(s)	105
Eco31I	GGTCTC	1 cut(s)	283
Eco53kI	GAGCTC	1 cut(s)	103
Eco57I	CTGAAG	1 cut(s)	293
EcoICRI	GAGCTC	1 cut(s)	103
EcoT38I	GRGCYC	1 cut(s)	105
FaeI	CATG	2 cut(s)	488, 581
FaiI	YATR	6 cut(s)	268, 300, 486, 579, 634, 640
FalI	AAGNNNNNCTT	2 cut(s)	117, 149
FatI	CATG	2 cut(s)	484, 577
Fnu4HI	GCNGC	5 cut(s)	148, 151, 154, 452, 564
FokI	GGATG	1 cut(s)	518
FriOI	GRGCYC	1 cut(s)	105
Fsp4HI	GCNGC	5 cut(s)	148, 151, 154, 452, 564
FspBI	CTAG	3 cut(s)	377, 411, 533
GluI	GCNGC	5 cut(s)	148, 151, 154, 452, 564
GsaI	CCCAGC	1 cut(s)	80
GsuI	CTGGAG	1 cut(s)	588
HapII	CCGG	2 cut(s)	49, 542
Hin1II	CATG	2 cut(s)	488, 581
HinfI	GANTC	3 cut(s)	30, 302, 458
HpaII	CCGG	2 cut(s)	49, 542
Hpy166II	GTNNAC	1 cut(s)	190
Hpy188I	TCNGA	4 cut(s)	296, 312, 360, 463
Hpy8I	GTNNAC	1 cut(s)	190
Hpy99I	CGWCG	1 cut(s)	75
HpyCH4III	ACNGT	1 cut(s)	559
HpyCH4IV	ACGT	1 cut(s)	59
HpyCH4V	TGCA	2 cut(s)	147, 608
HpyF10VI	GCNNNNNNNGC	4 cut(s)	109, 128, 153, 569
HpyF3I	CTNAG	3 cut(s)	96, 246, 462
HpySE526I	ACGT	1 cut(s)	59
Hsp92II	CATG	2 cut(s)	488, 581
Kzo9I	GATC	2 cut(s)	340, 430
LguI	GCTCTTC	1 cut(s)	167
LmnI	GCTCC	2 cut(s)	100, 569
LpnPI	CCDG	7 cut(s)	62, 62, 83, 187, 353, 552, 555
Lsp1109I	GCAGC	4 cut(s)	137, 159, 463, 550
LweI	GCATC	1 cut(s)	109
MaeI	CTAG	3 cut(s)	377, 411, 533
MaeII	ACGT	1 cut(s)	59
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	2 cut(s)	342, 432
MboI	GATC	2 cut(s)	340, 430
MflI	RGATCY	1 cut(s)	340
MhlI	GDGCHC	2 cut(s)	105, 114
MluCI	AATT	1 cut(s)	528
MnlI	CCTC	6 cut(s)	209, 238, 268, 496, 539, 613
MroXI	GAANNNNTTC	2 cut(s)	306, 400
MspA1I	CMGCKG	1 cut(s)	150
MspI	CCGG	2 cut(s)	49, 542
MspR9I	CCNGG	1 cut(s)	543
MwoI	GCNNNNNNNGC	4 cut(s)	109, 128, 153, 569
NciI	CCSGG	1 cut(s)	543
NdeII	GATC	2 cut(s)	340, 430
NlaIII	CATG	2 cut(s)	488, 581
NspV	TTCGAA	1 cut(s)	65
PagI	TCATGA	1 cut(s)	577
PciSI	GCTCTTC	1 cut(s)	167
PcsI	WCGNNNNNNNCGW	1 cut(s)	189
PdmI	GAANNNNTTC	2 cut(s)	306, 400
PfeI	GAWTC	3 cut(s)	30, 302, 458
PfoI	TCCNGGA	1 cut(s)	541
PkrI	GCNGC	5 cut(s)	149, 152, 155, 453, 565
Psp124BI	GAGCTC	1 cut(s)	105
PspFI	CCCAGC	1 cut(s)	76
PstI	CTGCAG	1 cut(s)	149
PsuI	RGATCY	1 cut(s)	340
PvuII	CAGCTG	1 cut(s)	150
SacI	GAGCTC	1 cut(s)	105
SapI	GCTCTTC	1 cut(s)	167
SatI	GCNGC	5 cut(s)	148, 151, 154, 452, 564
Sau3AI	GATC	2 cut(s)	340, 430
ScrFI	CCNGG	1 cut(s)	543
SduI	GDGCHC	2 cut(s)	105, 114
SfaNI	GCATC	1 cut(s)	109
SfcI	CTRYAG	2 cut(s)	145, 558
SfuI	TTCGAA	1 cut(s)	65
SmlI	CTYRAG	1 cut(s)	280
SmoI	CTYRAG	1 cut(s)	280
Sse9I	AATT	1 cut(s)	528
SsiI	CCGC	2 cut(s)	153, 205
SspMI	CTAG	3 cut(s)	377, 411, 533
SstI	GAGCTC	1 cut(s)	105
StyD4I	CCNGG	1 cut(s)	541
TaaI	ACNGT	1 cut(s)	559
TaiI	ACGT	1 cut(s)	62
TaqI	TCGA	4 cut(s)	33, 65, 165, 456
TasI	AATT	1 cut(s)	528
TauI	GCSGC	1 cut(s)	156
TfiI	GAWTC	3 cut(s)	30, 302, 458
TseI	GCWGC	4 cut(s)	147, 150, 451, 563
TspDTI	ATGAA	4 cut(s)	38, 315, 525, 534
XbaI	TCTAGA	1 cut(s)	376
XmnI	GAANNNNTTC	2 cut(s)	306, 400
XspI	CTAG	3 cut(s)	377, 411, 533

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.