Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000116.1

Orthogroup ID

OG0009666

Physical Location & Seq

Genomic Coordinates Forward (+)

259728 .. 264729

Gene Structure 5002 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000116.1_g000053.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

atggggagagggaaagtggaattgaagaaaatcgagaataagataaaccggcaagtgaccttttcgaaacgacggctcggtctgttcaagaaagctcaggagatctctgtgctctgcgatgcccaagttgcccttatagtctcctgcagccgcggcaaggtcttcgactttgccagcaccaacgagcattttcttggagaagatcttgaaaaacttcgtctgaaagaattggaaaatcttgagaaacagcttgacagaactctttcacaagctagacaaaggaagatgcagatgatgttagatcaattagaagcactacgcagaaaggagaatgatcttgaagagatacataagcagctaaaatctgagcttgaagaaagggaaaaacatagcgacaatgatgatgatgaagcattaattcaaggtcgtccaggaggagagcctactgtagctgctggagcttctcatgaaaacatttctactaaaacgcgctctgcaaatgctaatcagcaagagcccacttatgaatatggtaaagatctcctgtatatgaatttgaaacttctcaccttagttaacacagtgcagaaaccctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009553 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0010016 GO:0010022 GO:0010073 GO:0010093 GO:0010094 GO:0010154 GO:0010468 GO:0010556 GO:0010557 GO:0010582 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0035670 GO:0040007 GO:0045893 GO:0045935 GO:0046983 GO:0048229 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048439 GO:0048440 GO:0048443 GO:0048444 GO:0048445 GO:0048448 GO:0048449 GO:0048455 GO:0048457 GO:0048459 GO:0048461 GO:0048462 GO:0048466 GO:0048467 GO:0048481 GO:0048507 GO:0048509 GO:0048518 GO:0048522 GO:0048532 GO:0048589 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048832 GO:0048833 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0080060 GO:0080090 GO:0080112 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

198

Amino Acids

22.74

Weight (kDa)

7.75

Isoelectric Point (pI)

41.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009666)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g11290 FvH4_3g11290 FvH4_3g11290 FvH4_3g11290 FvH4_7g28690 FvH4_7g28690 FvH4_7g28690
malus_domestica	MD01G1192400.v1.1
prunus_persica	Prupe.2G287000_v2.0.a1 Prupe.2G287000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0376191
rosa_laevigata	RLG00000026622
rosa_multiflora	Rmu_ssc0000116.1_g000053
rosa_roxburghii	Rroxscaffold_4G00282320
rosa_rugosa	Rorug01G0394300
rosa_samantha	Rh1AG405900 Rh1BG369600 Rh1CG382300 Rh1CG382500 Rh1DG399200 Rh1DG399400
rosa_wichuraiana	Rw1G036010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	78
AccII	CGCG	2 cut(s)	153, 490
AciI	CCGC	2 cut(s)	151, 153
AcsI	RAATTY	1 cut(s)	553
AfiI	CCNNNNNNNGG	1 cut(s)	157
AgsI	TTSAA	7 cut(s)	25, 88, 209, 341, 374, 422, 559
AjnI	CCWGG	1 cut(s)	430
AluBI	AGCT	7 cut(s)	95, 250, 272, 358, 370, 452, 461
AluI	AGCT	7 cut(s)	95, 250, 272, 358, 370, 452, 461
Alw21I	GWGCWC	1 cut(s)	114
Alw26I	GTCTC	1 cut(s)	145
ApeKI	GCWGC	3 cut(s)	147, 355, 452
ApoI	RAATTY	1 cut(s)	553
AseI	ATTAAT	1 cut(s)	416
Asp700I	GAANNNNTTC	2 cut(s)	213, 262
AspLEI	GCGC	1 cut(s)	492
AsuHPI	GGTGA	1 cut(s)	559
AsuII	TTCGAA	1 cut(s)	65
BanII	GRGCYC	1 cut(s)	519
BbsI	GAAGAC	1 cut(s)	154
Bbv12I	GWGCWC	1 cut(s)	114
BbvI	GCAGC	3 cut(s)	159, 367, 439
BceAI	ACGGC	1 cut(s)	89
BcgI	CGANNNNNNTGC	2 cut(s)	145, 179
BciT130I	CCWGG	1 cut(s)	432
BcoDI	GTCTC	1 cut(s)	145
BfaI	CTAG	1 cut(s)	273
BfmI	CTRYAG	2 cut(s)	145, 447
BglII	AGATCT	3 cut(s)	102, 202, 538
BisI	GCNGC	5 cut(s)	148, 151, 154, 356, 453
BlsI	GCNGC	5 cut(s)	149, 152, 155, 357, 454
Bme1390I	CCNGG	1 cut(s)	432
BmrFI	CCNGG	1 cut(s)	432
BmsI	GCATC	2 cut(s)	109, 276
BpiI	GAAGAC	1 cut(s)	154
BpmI	CTGGAG	1 cut(s)	477
Bpu10I	CCTNAGC	1 cut(s)	96
Bpu14I	TTCGAA	1 cut(s)	65
BpuEI	CTTGAG	1 cut(s)	260
BsaJI	CCNNGG	1 cut(s)	151
Bsc4I	CCNNNNNNNGG	1 cut(s)	157
Bse118I	RCCGGY	1 cut(s)	48
BseBI	CCWGG	1 cut(s)	432
BseDI	CCNNGG	1 cut(s)	151
BseLI	CCNNNNNNNGG	1 cut(s)	157
BseMII	CTCAG	2 cut(s)	110, 357
BseRI	GAGGAG	1 cut(s)	450
BseXI	GCAGC	3 cut(s)	159, 367, 439
Bsh1236I	CGCG	2 cut(s)	153, 490
BsiHKAI	GWGCWC	1 cut(s)	114
BsiSI	CCGG	1 cut(s)	49
BslI	CCNNNNNNNGG	1 cut(s)	157
BsmAI	GTCTC	1 cut(s)	145
Bsp119I	TTCGAA	1 cut(s)	65
Bsp1286I	GDGCHC	2 cut(s)	114, 519
Bsp143I	GATC	5 cut(s)	102, 202, 301, 334, 538
BspACI	CCGC	2 cut(s)	151, 153
BspCNI	CTCAG	2 cut(s)	109, 358
BspFNI	CGCG	2 cut(s)	153, 490
BspHI	TCATGA	1 cut(s)	466
BspMAI	CTGCAG	1 cut(s)	149
BspT104I	TTCGAA	1 cut(s)	65
BsrFI	RCCGGY	1 cut(s)	48
BssAI	RCCGGY	1 cut(s)	48
BssECI	CCNNGG	1 cut(s)	151
BssMI	GATC	5 cut(s)	102, 202, 301, 334, 538
Bst2UI	CCWGG	1 cut(s)	432
Bst4CI	ACNGT	2 cut(s)	448, 583
Bst6I	CTCTTC	1 cut(s)	336
BstBI	TTCGAA	1 cut(s)	65
BstC8I	GCNNGC	1 cut(s)	175
BstDEI	CTNAG	3 cut(s)	96, 366, 571
BstDSI	CCRYGG	1 cut(s)	151
BstFNI	CGCG	2 cut(s)	153, 490
BstHHI	GCGC	1 cut(s)	492
BstKTI	GATC	5 cut(s)	105, 205, 304, 337, 541
BstMAI	GTCTC	1 cut(s)	145
BstMBI	GATC	5 cut(s)	102, 202, 301, 334, 538
BstMWI	GCNNNNNNNGC	3 cut(s)	128, 153, 458
BstNI	CCWGG	1 cut(s)	432
BstSCI	CCNGG	1 cut(s)	430
BstSFI	CTRYAG	2 cut(s)	145, 447
BstUI	CGCG	2 cut(s)	153, 490
BstV1I	GCAGC	3 cut(s)	159, 367, 439
BstV2I	GAAGAC	1 cut(s)	154
BstX2I	RGATCY	3 cut(s)	102, 202, 538
BstYI	RGATCY	3 cut(s)	102, 202, 538
BtgI	CCRYGG	1 cut(s)	151
BtgZI	GCGATG	1 cut(s)	132
BtsIMutI	CAGTG	1 cut(s)	588
Cac8I	GCNNGC	1 cut(s)	175
CciI	TCATGA	1 cut(s)	466
CfoI	GCGC	1 cut(s)	492
Cfr10I	RCCGGY	1 cut(s)	48
Cfr42I	CCGCGG	1 cut(s)	154
CviAII	CATG	1 cut(s)	467
DdeI	CTNAG	3 cut(s)	96, 366, 571
DpnI	GATC	5 cut(s)	104, 204, 303, 336, 540
DpnII	GATC	5 cut(s)	102, 202, 301, 334, 538
DrdI	GACNNNNNNGTC	1 cut(s)	78
DseDI	GACNNNNNNGTC	1 cut(s)	78
Eam1104I	CTCTTC	1 cut(s)	336
EarI	CTCTTC	1 cut(s)	336
Eco24I	GRGCYC	1 cut(s)	519
EcoRII	CCWGG	1 cut(s)	430
EcoT38I	GRGCYC	1 cut(s)	519
FaeI	CATG	1 cut(s)	470
FaiI	YATR	8 cut(s)	137, 351, 390, 468, 525, 531, 549, 551
FalI	AAGNNNNNCTT	2 cut(s)	117, 149
FatI	CATG	1 cut(s)	466
Fnu4HI	GCNGC	5 cut(s)	148, 151, 154, 356, 453
FriOI	GRGCYC	1 cut(s)	519
Fsp4HI	GCNGC	5 cut(s)	148, 151, 154, 356, 453
FspBI	CTAG	1 cut(s)	273
GlaI	GCGC	1 cut(s)	491
GluI	GCNGC	5 cut(s)	148, 151, 154, 356, 453
GsuI	CTGGAG	1 cut(s)	477
HapII	CCGG	1 cut(s)	49
HhaI	GCGC	1 cut(s)	492
Hin1II	CATG	1 cut(s)	470
Hin6I	GCGC	1 cut(s)	490
HinP1I	GCGC	1 cut(s)	490
HincII	GTYRAC	1 cut(s)	577
HindII	GTYRAC	1 cut(s)	577
HpaI	GTTAAC	1 cut(s)	577
HpaII	CCGG	1 cut(s)	49
HphI	GGTGA	1 cut(s)	559
Hpy166II	GTNNAC	1 cut(s)	577
Hpy188I	TCNGA	2 cut(s)	222, 367
Hpy188III	TCNNGA	7 cut(s)	34, 88, 98, 206, 239, 338, 467
Hpy8I	GTNNAC	1 cut(s)	577
Hpy99I	CGWCG	1 cut(s)	75
HpyCH4III	ACNGT	2 cut(s)	448, 583
HpyCH4V	TGCA	4 cut(s)	147, 289, 497, 586
HpyF10VI	GCNNNNNNNGC	3 cut(s)	128, 153, 458
HpyF3I	CTNAG	3 cut(s)	96, 366, 571
Hsp92II	CATG	1 cut(s)	470
HspAI	GCGC	1 cut(s)	490
KspAI	GTTAAC	1 cut(s)	577
KspI	CCGCGG	1 cut(s)	154
Kzo9I	GATC	5 cut(s)	102, 202, 301, 334, 538
LmnI	GCTCC	1 cut(s)	458
LpnPI	CCDG	8 cut(s)	62, 83, 157, 187, 417, 441, 444, 557
Lsp1109I	GCAGC	3 cut(s)	159, 367, 439
LweI	GCATC	2 cut(s)	109, 276
MaeI	CTAG	1 cut(s)	273
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	5 cut(s)	104, 204, 303, 336, 540
MboI	GATC	5 cut(s)	102, 202, 301, 334, 538
MboII	GAAGA	6 cut(s)	37, 154, 212, 295, 353, 386
MflI	RGATCY	3 cut(s)	102, 202, 538
MhlI	GDGCHC	2 cut(s)	114, 519
MluCI	AATT	5 cut(s)	20, 227, 305, 417, 553
MnlI	CCTC	1 cut(s)	428
MroXI	GAANNNNTTC	2 cut(s)	213, 262
MseI	TTAA	2 cut(s)	416, 576
MspA1I	CMGCKG	1 cut(s)	153
MspI	CCGG	1 cut(s)	49
MspR9I	CCNGG	1 cut(s)	432
MvaI	CCWGG	1 cut(s)	432
MvnI	CGCG	2 cut(s)	153, 490
MwoI	GCNNNNNNNGC	3 cut(s)	128, 153, 458
NdeII	GATC	5 cut(s)	102, 202, 301, 334, 538
NlaIII	CATG	1 cut(s)	470
NmuCI	GTSAC	1 cut(s)	55
NspV	TTCGAA	1 cut(s)	65
PagI	TCATGA	1 cut(s)	466
PdmI	GAANNNNTTC	2 cut(s)	213, 262
PfoI	TCCNGGA	1 cut(s)	430
PkrI	GCNGC	5 cut(s)	149, 152, 155, 357, 454
PshBI	ATTAAT	1 cut(s)	416
Psp6I	CCWGG	1 cut(s)	430
PspGI	CCWGG	1 cut(s)	430
PstI	CTGCAG	1 cut(s)	149
PsuI	RGATCY	3 cut(s)	102, 202, 538
SacII	CCGCGG	1 cut(s)	154
SaqAI	TTAA	2 cut(s)	416, 576
SatI	GCNGC	5 cut(s)	148, 151, 154, 356, 453
Sau3AI	GATC	5 cut(s)	102, 202, 301, 334, 538
ScrFI	CCNGG	1 cut(s)	432
SduI	GDGCHC	2 cut(s)	114, 519
SfaNI	GCATC	2 cut(s)	109, 276
SfcI	CTRYAG	2 cut(s)	145, 447
Sfr303I	CCGCGG	1 cut(s)	154
SfuI	TTCGAA	1 cut(s)	65
SgrBI	CCGCGG	1 cut(s)	154
SmlI	CTYRAG	1 cut(s)	239
SmoI	CTYRAG	1 cut(s)	239
Sse9I	AATT	5 cut(s)	20, 227, 305, 417, 553
SsiI	CCGC	2 cut(s)	151, 153
SspMI	CTAG	1 cut(s)	273
StyD4I	CCNGG	1 cut(s)	430
TaaI	ACNGT	2 cut(s)	448, 583
TaqI	TCGA	3 cut(s)	33, 65, 165
TaqII	GACCGA	1 cut(s)	68
TasI	AATT	5 cut(s)	20, 227, 305, 417, 553
TauI	GCSGC	2 cut(s)	153, 156
Tru1I	TTAA	2 cut(s)	416, 576
Tru9I	TTAA	2 cut(s)	416, 576
TscAI	CASTG	1 cut(s)	588
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	3 cut(s)	147, 355, 452
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	4 cut(s)	423, 483, 540, 566
TspRI	CASTG	1 cut(s)	588
VspI	ATTAAT	1 cut(s)	416
XapI	RAATTY	1 cut(s)	553
XmnI	GAANNNNTTC	2 cut(s)	213, 262
XspI	CTAG	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.