Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0009666

Physical Location & Seq

Genomic Coordinates Forward (+)

63396019 .. 63414477

Gene Structure 18459 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG405900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGGGAGAGGGAAAGTGGAATTGAAGAAAATCGAGAATAAGATAAACCGGCAAGTGACCTTTTCGAAACGACGGCTCGGTCTGTTCAAGAAAGCTCAGGAGATCTCTGTGCTCTGCGATGCCCAAGTTGCCCTTATCGTCTCCTGCAGCCGCGGCAAGGTCTTCGACTTTGCCAGCTCCAACGATGTAAACGAAATTCTCAACCGGTACCAACAAAGCTGCTATTCCTCACAAGACAATGTTGCTGAGAATGAAACAGAGAACTTATATCAAGAAGTCTCAAAATTGAAAGTCAAATATGAATCTCTTCAGCGTTCGCAAAGGCATTTTCTTGGAGAAGATCTTGAAAATCTTCGTCTGAAAGAATTGGAAAATCTTGAGAAACAGCTTGACAGAACTCTTTCACAAGCTAGACAAAGGAAGATGCAGATGATGTTAGATCAATTAGAAGCACTACGCAGAAAGGAGAATGATCTTGAAGAGATACATAAGCAGCTAAAATCTGAGCTTGAAGAAAGGGAAAAACATAGCGACAATGATGATGATGAAGCATTAATTCAAGGTCGTCCAGGAGGAGAGCCTACTGTAGCTGCTGGAGCTTCTCATGAAAACATTTCTACTAAAACGCGCTCTGCAAATGCTAATCAGCAAGAGCCCACTTATGAATATGGTGGTCTGAAGTTAGATCCAAAGGGGGGTTTTTCTGGCTTTCTTGATGGGGGAAGACCGTGGACGGCCACCGGAGAGGTGATGGGTGGAGGCCGCATCTTCTGCAAGGCCATAACAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009553 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0010016 GO:0010022 GO:0010073 GO:0010093 GO:0010094 GO:0010154 GO:0010468 GO:0010556 GO:0010557 GO:0010582 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0035670 GO:0040007 GO:0045893 GO:0045935 GO:0046983 GO:0048229 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048439 GO:0048440 GO:0048443 GO:0048444 GO:0048445 GO:0048448 GO:0048449 GO:0048455 GO:0048457 GO:0048459 GO:0048461 GO:0048462 GO:0048466 GO:0048467 GO:0048481 GO:0048507 GO:0048509 GO:0048518 GO:0048522 GO:0048532 GO:0048589 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048832 GO:0048833 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0080060 GO:0080090 GO:0080112 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

263

Amino Acids

29.8

Weight (kDa)

6.49

Isoelectric Point (pI)

48.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	5.7e-23	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	83 - 170	1.2e-25	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009666)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g11290 FvH4_3g11290 FvH4_3g11290 FvH4_3g11290 FvH4_7g28690 FvH4_7g28690 FvH4_7g28690
malus_domestica	MD01G1192400.v1.1
prunus_persica	Prupe.2G287000_v2.0.a1 Prupe.2G287000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0376191
rosa_laevigata	RLG00000026622
rosa_multiflora	Rmu_ssc0000116.1_g000053
rosa_roxburghii	Rroxscaffold_4G00282320
rosa_rugosa	Rorug01G0394300
rosa_samantha	Rh1AG405900 Rh1BG369600 Rh1CG382300 Rh1CG382500 Rh1DG399200 Rh1DG399400
rosa_wichuraiana	Rw1G036010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	78
Acc65I	GGTACC	1 cut(s)	207
AccB1I	GGYRCC	1 cut(s)	207
AccII	CGCG	2 cut(s)	153, 628
AciI	CCGC	3 cut(s)	151, 153, 763
AclWI	GGATC	1 cut(s)	680
AcoI	YGGCCR	1 cut(s)	735
AcsI	RAATTY	1 cut(s)	195
AcuI	CTGAAG	2 cut(s)	293, 698
AfaI	GTAC	1 cut(s)	209
AfiI	CCNNNNNNNGG	2 cut(s)	157, 695
AgeI	ACCGGT	1 cut(s)	204
AgsI	TTSAA	7 cut(s)	25, 88, 289, 347, 479, 512, 560
AjnI	CCWGG	1 cut(s)	568
AluBI	AGCT	9 cut(s)	95, 177, 219, 388, 410, 496, 508, 590, 599
AluI	AGCT	9 cut(s)	95, 177, 219, 388, 410, 496, 508, 590, 599
Alw21I	GWGCWC	1 cut(s)	114
Alw26I	GTCTC	2 cut(s)	145, 283
AlwI	GGATC	1 cut(s)	680
AoxI	GGCC	3 cut(s)	735, 760, 777
ApeKI	GCWGC	4 cut(s)	147, 219, 493, 590
ApoI	RAATTY	1 cut(s)	195
AseI	ATTAAT	1 cut(s)	554
AsiGI	ACCGGT	1 cut(s)	204
Asp700I	GAANNNNTTC	3 cut(s)	306, 351, 400
Asp718I	GGTACC	1 cut(s)	207
AspLEI	GCGC	1 cut(s)	630
AsuHPI	GGTGA	1 cut(s)	760
AsuII	TTCGAA	1 cut(s)	65
BanI	GGYRCC	1 cut(s)	207
BanII	GRGCYC	1 cut(s)	657
BbsI	GAAGAC	2 cut(s)	154, 730
Bbv12I	GWGCWC	1 cut(s)	114
BbvI	GCAGC	4 cut(s)	159, 206, 505, 577
BccI	CCATC	2 cut(s)	710, 745
BceAI	ACGGC	2 cut(s)	89, 750
BcgI	CGANNNNNNTGC	2 cut(s)	145, 179
BciT130I	CCWGG	1 cut(s)	570
BcoDI	GTCTC	2 cut(s)	145, 283
BfaI	CTAG	1 cut(s)	411
BfmI	CTRYAG	2 cut(s)	145, 585
BglII	AGATCT	2 cut(s)	102, 340
BisI	GCNGC	7 cut(s)	148, 151, 154, 220, 494, 591, 763
BlsI	GCNGC	7 cut(s)	149, 152, 155, 221, 495, 592, 764
Bme1390I	CCNGG	1 cut(s)	570
BmiI	GGNNCC	1 cut(s)	209
BmrFI	CCNGG	1 cut(s)	570
BmsI	GCATC	3 cut(s)	109, 414, 774
BpiI	GAAGAC	2 cut(s)	154, 730
BpmI	CTGGAG	1 cut(s)	615
Bpu10I	CCTNAGC	1 cut(s)	96
Bpu14I	TTCGAA	1 cut(s)	65
BpuEI	CTTGAG	1 cut(s)	398
BsaJI	CCNNGG	2 cut(s)	151, 728
BsaWI	WCCGGW	2 cut(s)	204, 740
Bsc4I	CCNNNNNNNGG	2 cut(s)	157, 695
Bse118I	RCCGGY	2 cut(s)	48, 204
BseBI	CCWGG	1 cut(s)	570
BseDI	CCNNGG	2 cut(s)	151, 728
BseLI	CCNNNNNNNGG	2 cut(s)	157, 695
BseMII	CTCAG	3 cut(s)	110, 237, 495
BseRI	GAGGAG	1 cut(s)	588
BseXI	GCAGC	4 cut(s)	159, 206, 505, 577
Bsh1236I	CGCG	2 cut(s)	153, 628
BshFI	GGCC	3 cut(s)	737, 762, 779
BshNI	GGYRCC	1 cut(s)	207
BshTI	ACCGGT	1 cut(s)	204
BsiHKAI	GWGCWC	1 cut(s)	114
BsiSI	CCGG	3 cut(s)	49, 205, 741
BslI	CCNNNNNNNGG	2 cut(s)	157, 695
BsmAI	GTCTC	2 cut(s)	145, 283
BsmBI	CGTCTC	1 cut(s)	145
BsnI	GGCC	3 cut(s)	737, 762, 779
Bsp119I	TTCGAA	1 cut(s)	65
Bsp1286I	GDGCHC	2 cut(s)	114, 657
Bsp143I	GATC	5 cut(s)	102, 340, 439, 472, 685
BspACI	CCGC	3 cut(s)	151, 153, 763
BspANI	GGCC	3 cut(s)	737, 762, 779
BspCNI	CTCAG	3 cut(s)	109, 238, 496
BspFNI	CGCG	2 cut(s)	153, 628
BspHI	TCATGA	1 cut(s)	604
BspLI	GGNNCC	1 cut(s)	209
BspMAI	CTGCAG	1 cut(s)	149
BspPI	GGATC	1 cut(s)	680
BspT104I	TTCGAA	1 cut(s)	65
BspT107I	GGYRCC	1 cut(s)	207
BsrFI	RCCGGY	2 cut(s)	48, 204
BssAI	RCCGGY	2 cut(s)	48, 204
BssECI	CCNNGG	2 cut(s)	151, 728
BssMI	GATC	5 cut(s)	102, 340, 439, 472, 685
Bst2UI	CCWGG	1 cut(s)	570
Bst4CI	ACNGT	2 cut(s)	586, 729
Bst6I	CTCTTC	2 cut(s)	312, 474
BstAPI	GCANNNNNTGC	1 cut(s)	771
BstBI	TTCGAA	1 cut(s)	65
BstC8I	GCNNGC	1 cut(s)	175
BstDEI	CTNAG	3 cut(s)	96, 246, 504
BstDSI	CCRYGG	2 cut(s)	151, 728
BstFNI	CGCG	2 cut(s)	153, 628
BstHHI	GCGC	1 cut(s)	630
BstKTI	GATC	5 cut(s)	105, 343, 442, 475, 688
BstMAI	GTCTC	2 cut(s)	145, 283
BstMBI	GATC	5 cut(s)	102, 340, 439, 472, 685
BstMWI	GCNNNNNNNGC	4 cut(s)	128, 153, 596, 771
BstNI	CCWGG	1 cut(s)	570
BstSCI	CCNGG	1 cut(s)	568
BstSFI	CTRYAG	2 cut(s)	145, 585
BstUI	CGCG	2 cut(s)	153, 628
BstV1I	GCAGC	4 cut(s)	159, 206, 505, 577
BstV2I	GAAGAC	2 cut(s)	154, 730
BstX2I	RGATCY	3 cut(s)	102, 340, 685
BstYI	RGATCY	3 cut(s)	102, 340, 685
BsuRI	GGCC	3 cut(s)	737, 762, 779
BtgI	CCRYGG	2 cut(s)	151, 728
BtgZI	GCGATG	1 cut(s)	132
Cac8I	GCNNGC	1 cut(s)	175
CciI	TCATGA	1 cut(s)	604
CfoI	GCGC	1 cut(s)	630
Cfr10I	RCCGGY	2 cut(s)	48, 204
Cfr42I	CCGCGG	1 cut(s)	154
Csp6I	GTAC	1 cut(s)	208
CspAI	ACCGGT	1 cut(s)	204
CviAII	CATG	1 cut(s)	605
CviQI	GTAC	1 cut(s)	208
DdeI	CTNAG	3 cut(s)	96, 246, 504
DpnI	GATC	5 cut(s)	104, 342, 441, 474, 687
DpnII	GATC	5 cut(s)	102, 340, 439, 472, 685
DrdI	GACNNNNNNGTC	1 cut(s)	78
DseDI	GACNNNNNNGTC	1 cut(s)	78
EaeI	YGGCCR	1 cut(s)	735
Eam1104I	CTCTTC	2 cut(s)	312, 474
EarI	CTCTTC	2 cut(s)	312, 474
Eco24I	GRGCYC	1 cut(s)	657
Eco57I	CTGAAG	2 cut(s)	293, 698
EcoRII	CCWGG	1 cut(s)	568
EcoT38I	GRGCYC	1 cut(s)	657
Esp3I	CGTCTC	1 cut(s)	145
FaeI	CATG	1 cut(s)	608
FaiI	YATR	8 cut(s)	268, 300, 489, 528, 606, 663, 669, 782
FalI	AAGNNNNNCTT	2 cut(s)	117, 149
FatI	CATG	1 cut(s)	604
Fnu4HI	GCNGC	7 cut(s)	148, 151, 154, 220, 494, 591, 763
FriOI	GRGCYC	1 cut(s)	657
Fsp4HI	GCNGC	7 cut(s)	148, 151, 154, 220, 494, 591, 763
FspBI	CTAG	1 cut(s)	411
GlaI	GCGC	1 cut(s)	629
GluI	GCNGC	7 cut(s)	148, 151, 154, 220, 494, 591, 763
GsuI	CTGGAG	1 cut(s)	615
HaeIII	GGCC	3 cut(s)	737, 762, 779
HapII	CCGG	3 cut(s)	49, 205, 741
HhaI	GCGC	1 cut(s)	630
Hin1II	CATG	1 cut(s)	608
Hin6I	GCGC	1 cut(s)	628
HinP1I	GCGC	1 cut(s)	628
HinfI	GANTC	1 cut(s)	302
HpaII	CCGG	3 cut(s)	49, 205, 741
HphI	GGTGA	1 cut(s)	760
Hpy166II	GTNNAC	2 cut(s)	190, 732
Hpy188I	TCNGA	3 cut(s)	360, 505, 678
Hpy188III	TCNNGA	9 cut(s)	34, 88, 98, 272, 344, 377, 476, 605, 713
Hpy8I	GTNNAC	2 cut(s)	190, 732
Hpy99I	CGWCG	1 cut(s)	75
HpyCH4III	ACNGT	2 cut(s)	586, 729
HpyCH4V	TGCA	4 cut(s)	147, 427, 635, 774
HpyF10VI	GCNNNNNNNGC	4 cut(s)	128, 153, 596, 771
HpyF3I	CTNAG	3 cut(s)	96, 246, 504
Hsp92II	CATG	1 cut(s)	608
HspAI	GCGC	1 cut(s)	628
KpnI	GGTACC	1 cut(s)	211
KspI	CCGCGG	1 cut(s)	154
Kzo9I	GATC	5 cut(s)	102, 340, 439, 472, 685
LmnI	GCTCC	2 cut(s)	182, 596
Lsp1109I	GCAGC	4 cut(s)	159, 206, 505, 577
LweI	GCATC	3 cut(s)	109, 414, 774
MaeI	CTAG	1 cut(s)	411
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	5 cut(s)	104, 342, 441, 474, 687
MboI	GATC	5 cut(s)	102, 340, 439, 472, 685
MflI	RGATCY	3 cut(s)	102, 340, 685
MhlI	GDGCHC	2 cut(s)	114, 657
MluCI	AATT	6 cut(s)	20, 195, 284, 365, 443, 555
MmeI	TCCRAC	1 cut(s)	204
MnlI	CCTC	4 cut(s)	238, 566, 739, 752
MroXI	GAANNNNTTC	3 cut(s)	306, 351, 400
MseI	TTAA	1 cut(s)	554
MspA1I	CMGCKG	1 cut(s)	153
MspI	CCGG	3 cut(s)	49, 205, 741
MspR9I	CCNGG	1 cut(s)	570
MvaI	CCWGG	1 cut(s)	570
MvnI	CGCG	2 cut(s)	153, 628
MwoI	GCNNNNNNNGC	4 cut(s)	128, 153, 596, 771
NdeII	GATC	5 cut(s)	102, 340, 439, 472, 685
NlaIII	CATG	1 cut(s)	608
NlaIV	GGNNCC	1 cut(s)	209
NmuCI	GTSAC	1 cut(s)	55
NspV	TTCGAA	1 cut(s)	65
PagI	TCATGA	1 cut(s)	604
PcsI	WCGNNNNNNNCGW	1 cut(s)	189
PdmI	GAANNNNTTC	3 cut(s)	306, 351, 400
PfeI	GAWTC	1 cut(s)	302
PfoI	TCCNGGA	1 cut(s)	568
PinAI	ACCGGT	1 cut(s)	204
PkrI	GCNGC	7 cut(s)	149, 152, 155, 221, 495, 592, 764
PshBI	ATTAAT	1 cut(s)	554
Psp6I	CCWGG	1 cut(s)	568
PspGI	CCWGG	1 cut(s)	568
PspN4I	GGNNCC	1 cut(s)	209
PstI	CTGCAG	1 cut(s)	149
PsuI	RGATCY	3 cut(s)	102, 340, 685
RsaI	GTAC	1 cut(s)	209
RsaNI	GTAC	1 cut(s)	208
SacII	CCGCGG	1 cut(s)	154
SaqAI	TTAA	1 cut(s)	554
SatI	GCNGC	7 cut(s)	148, 151, 154, 220, 494, 591, 763
Sau3AI	GATC	5 cut(s)	102, 340, 439, 472, 685
ScrFI	CCNGG	1 cut(s)	570
SduI	GDGCHC	2 cut(s)	114, 657
SfaNI	GCATC	3 cut(s)	109, 414, 774
SfcI	CTRYAG	2 cut(s)	145, 585
Sfr303I	CCGCGG	1 cut(s)	154
SfuI	TTCGAA	1 cut(s)	65
SgrBI	CCGCGG	1 cut(s)	154
SmlI	CTYRAG	1 cut(s)	377
SmoI	CTYRAG	1 cut(s)	377
Sse9I	AATT	6 cut(s)	20, 195, 284, 365, 443, 555
SsiI	CCGC	3 cut(s)	151, 153, 763
SspMI	CTAG	1 cut(s)	411
StyD4I	CCNGG	1 cut(s)	568
TaaI	ACNGT	2 cut(s)	586, 729
TaqI	TCGA	3 cut(s)	33, 65, 165
TaqII	GACCGA	1 cut(s)	68
TasI	AATT	6 cut(s)	20, 195, 284, 365, 443, 555
TauI	GCSGC	3 cut(s)	153, 156, 765
TfiI	GAWTC	1 cut(s)	302
Tru1I	TTAA	1 cut(s)	554
Tru9I	TTAA	1 cut(s)	554
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	4 cut(s)	147, 219, 493, 590
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	5 cut(s)	267, 315, 561, 621, 678
VspI	ATTAAT	1 cut(s)	554
XapI	RAATTY	1 cut(s)	195
XmnI	GAANNNNTTC	3 cut(s)	306, 351, 400
XspI	CTAG	1 cut(s)	411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.