Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0009666

Physical Location & Seq

Genomic Coordinates Forward (+)

28291541 .. 28294650

Gene Structure 3110 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G287000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGGGAGAGGGAGAGTGGTGTTGGAGAGAATAGAAAACAAAATCAACCGTCAAGTGACCTTCTCAAAACGAAGAAATGGTCTGCTCAAGAAAGCCTACGAGCTCTCTGTGCTCTGCGATGCCCAAGTTGCCCTCATCATCTCCTCCAGCAGTGGCAAGCTCTATGAGTTTGGCAGCACTGACGTGAACAAAATTCTTGAGCGGTACCGTCAATGTTGCTACTCCTTACAGGGCAATGTTGCTGAGAATGAAACACAGAACTTATACCAAGAGGTCTCAAAATTAAAGGTCAAATACGAGTCTCTTCAACTTTCACAGAGGCATTTGCTTGGAGAAGATCTTGAAAAGCTTCGCCTGAAAGAATTGGTGAATCTTGAGAATCAACTTGACAAAACTCTCTCAAAAGCTAGACAACGAAAGACGGAGATGATGTATGATCGATTAGAAGAACTGCGCCAAAAGGAGAACGATCTTGGAGAGAAAAATCAGCAGCTCAAATCCGAGCTTGAGGAAGAAGGACATGGTCAAGCAACACTGCAAGGTCCGGGAGAGCTTCCACTTACAAAAGACAATCGCATTGAATCAGAGCATCCCACCTTACGCTTACAGATATGGGATCACCAACCAGTTCCCCAGGAAAAAGCAGCTGATGATGATCAAGGGAGGACCATGGTGGGTGGGAGCAAGAGTAACTGCAACCAGCGGGGTTGGCTTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009553 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0010016 GO:0010022 GO:0010073 GO:0010093 GO:0010094 GO:0010154 GO:0010468 GO:0010556 GO:0010557 GO:0010582 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0035670 GO:0040007 GO:0045893 GO:0045935 GO:0046983 GO:0048229 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048439 GO:0048440 GO:0048443 GO:0048444 GO:0048445 GO:0048448 GO:0048449 GO:0048455 GO:0048457 GO:0048459 GO:0048461 GO:0048462 GO:0048466 GO:0048467 GO:0048481 GO:0048507 GO:0048509 GO:0048518 GO:0048522 GO:0048532 GO:0048589 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048832 GO:0048833 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0080060 GO:0080090 GO:0080112 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

240

Amino Acids

27.57

Weight (kDa)

7.65

Isoelectric Point (pI)

42.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009666)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g11290 FvH4_3g11290 FvH4_3g11290 FvH4_3g11290 FvH4_7g28690 FvH4_7g28690 FvH4_7g28690
malus_domestica	MD01G1192400.v1.1
prunus_persica	Prupe.2G287000_v2.0.a1 Prupe.2G287000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0376191
rosa_laevigata	RLG00000026622
rosa_multiflora	Rmu_ssc0000116.1_g000053
rosa_roxburghii	Rroxscaffold_4G00282320
rosa_rugosa	Rorug01G0394300
rosa_samantha	Rh1AG405900 Rh1BG369600 Rh1CG382300 Rh1CG382500 Rh1DG399200 Rh1DG399400
rosa_wichuraiana	Rw1G036010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	204
AccB1I	GGYRCC	1 cut(s)	204
AccBSI	CCGCTC	1 cut(s)	202
AciI	CCGC	2 cut(s)	202, 703
AclWI	GGATC	1 cut(s)	624
AcsI	RAATTY	1 cut(s)	192
AfaI	GTAC	1 cut(s)	206
AgsI	TTSAA	3 cut(s)	308, 344, 581
AjiI	CACGTC	1 cut(s)	184
AjnI	CCWGG	1 cut(s)	633
AleI	CACNNNNGTG	1 cut(s)	182
AluBI	AGCT	8 cut(s)	103, 160, 349, 407, 493, 505, 553, 647
AluI	AGCT	8 cut(s)	103, 160, 349, 407, 493, 505, 553, 647
Alw21I	GWGCWC	2 cut(s)	105, 114
Alw26I	GTCTC	2 cut(s)	280, 306
AlwI	GGATC	1 cut(s)	624
ApeKI	GCWGC	3 cut(s)	174, 490, 644
ApoI	RAATTY	1 cut(s)	192
ArsI	GACNNNNNNTTYG	2 cut(s)	64, 96
Asp700I	GAANNNNTTC	1 cut(s)	348
Asp718I	GGTACC	1 cut(s)	204
AspLEI	GCGC	1 cut(s)	456
AspS9I	GGNCC	2 cut(s)	542, 666
AsuC2I	CCSGG	1 cut(s)	546
AsuHPI	GGTGA	2 cut(s)	379, 611
AvaII	GGWCC	2 cut(s)	542, 666
BanI	GGYRCC	1 cut(s)	204
BanII	GRGCYC	1 cut(s)	105
Bbv12I	GWGCWC	2 cut(s)	105, 114
BbvI	GCAGC	3 cut(s)	186, 502, 656
BciT130I	CCWGG	1 cut(s)	635
BclI	TGATCA	1 cut(s)	655
BcnI	CCSGG	1 cut(s)	546
BcoDI	GTCTC	2 cut(s)	280, 306
BfaI	CTAG	1 cut(s)	408
BglII	AGATCT	1 cut(s)	337
BisI	GCNGC	3 cut(s)	175, 491, 645
BlsI	GCNGC	3 cut(s)	176, 492, 646
Bme1390I	CCNGG	2 cut(s)	546, 635
Bme18I	GGWCC	2 cut(s)	542, 666
BmgBI	CACGTC	1 cut(s)	184
BmgT120I	GGNCC	2 cut(s)	542, 666
BmiI	GGNNCC	1 cut(s)	206
BmrFI	CCNGG	2 cut(s)	546, 635
BmsI	GCATC	2 cut(s)	109, 598
BpmI	CTGGAG	1 cut(s)	130
BpuEI	CTTGAG	4 cut(s)	71, 218, 395, 527
BpuMI	CCSGG	1 cut(s)	546
Bsa29I	ATCGAT	1 cut(s)	439
BsaBI	GATNNNNATC	1 cut(s)	654
BsaI	GGTCTC	1 cut(s)	280
BsaJI	CCNNGG	2 cut(s)	633, 669
BsaXI	ACNNNNNCTCC	4 cut(s)	416, 446, 673, 703
Bse1I	ACTGG	1 cut(s)	626
Bse3DI	GCAATG	1 cut(s)	241
Bse8I	GATNNNNATC	1 cut(s)	654
BseBI	CCWGG	1 cut(s)	635
BseCI	ATCGAT	1 cut(s)	439
BseDI	CCNNGG	2 cut(s)	633, 669
BseGI	GGATG	1 cut(s)	589
BseJI	GATNNNNATC	1 cut(s)	654
BseMI	GCAATG	1 cut(s)	241
BseMII	CTCAG	1 cut(s)	234
BseNI	ACTGG	1 cut(s)	626
BseRI	GAGGAG	1 cut(s)	133
BseXI	GCAGC	3 cut(s)	186, 502, 656
BshNI	GGYRCC	1 cut(s)	204
BshVI	ATCGAT	1 cut(s)	439
BsiHKAI	GWGCWC	2 cut(s)	105, 114
BsiSI	CCGG	1 cut(s)	545
BsmAI	GTCTC	2 cut(s)	280, 306
Bso31I	GGTCTC	1 cut(s)	280
Bsp1286I	GDGCHC	2 cut(s)	105, 114
Bsp143I	GATC	5 cut(s)	337, 436, 469, 616, 655
Bsp19I	CCATGG	1 cut(s)	669
BspACI	CCGC	2 cut(s)	202, 703
BspCNI	CTCAG	1 cut(s)	235
BspDI	ATCGAT	1 cut(s)	439
BspLI	GGNNCC	1 cut(s)	206
BspPI	GGATC	1 cut(s)	624
BspT107I	GGYRCC	1 cut(s)	204
BspTNI	GGTCTC	1 cut(s)	280
BsrBI	CCGCTC	1 cut(s)	202
BsrDI	GCAATG	1 cut(s)	241
BsrI	ACTGG	1 cut(s)	626
BssECI	CCNNGG	2 cut(s)	633, 669
BssMI	GATC	5 cut(s)	337, 436, 469, 616, 655
BssT1I	CCWWGG	1 cut(s)	669
Bst2UI	CCWGG	1 cut(s)	635
Bst4CI	ACNGT	2 cut(s)	50, 209
Bst6I	CTCTTC	1 cut(s)	309
BstC8I	GCNNGC	1 cut(s)	158
BstDEI	CTNAG	1 cut(s)	243
BstDSI	CCRYGG	1 cut(s)	669
BstF5I	GGATG	1 cut(s)	589
BstHHI	GCGC	1 cut(s)	456
BstKTI	GATC	5 cut(s)	340, 439, 472, 619, 658
BstMAI	GTCTC	2 cut(s)	280, 306
BstMBI	GATC	5 cut(s)	337, 436, 469, 616, 655
BstMWI	GCNNNNNNNGC	3 cut(s)	109, 128, 709
BstNI	CCWGG	1 cut(s)	635
BstSCI	CCNGG	2 cut(s)	544, 633
BstV1I	GCAGC	3 cut(s)	186, 502, 656
BstX2I	RGATCY	1 cut(s)	337
BstYI	RGATCY	1 cut(s)	337
Bsu15I	ATCGAT	1 cut(s)	439
BsuTUI	ATCGAT	1 cut(s)	439
BtgI	CCRYGG	1 cut(s)	669
BtgZI	GCGATG	1 cut(s)	132
BtrI	CACGTC	1 cut(s)	184
BtsCI	GGATG	1 cut(s)	589
BtsI	GCAGTG	2 cut(s)	157, 533
BtsIMutI	CAGTG	3 cut(s)	157, 177, 533
Cac8I	GCNNGC	1 cut(s)	158
CfoI	GCGC	1 cut(s)	456
Cfr13I	GGNCC	2 cut(s)	542, 666
ClaI	ATCGAT	1 cut(s)	439
Csp6I	GTAC	1 cut(s)	205
CviAII	CATG	2 cut(s)	521, 670
CviQI	GTAC	1 cut(s)	205
DdeI	CTNAG	1 cut(s)	243
DpnI	GATC	5 cut(s)	339, 438, 471, 618, 657
DpnII	GATC	5 cut(s)	337, 436, 469, 616, 655
Eam1104I	CTCTTC	1 cut(s)	309
EarI	CTCTTC	1 cut(s)	309
Ecl136II	GAGCTC	1 cut(s)	103
Eco130I	CCWWGG	1 cut(s)	669
Eco24I	GRGCYC	1 cut(s)	105
Eco31I	GGTCTC	1 cut(s)	280
Eco47I	GGWCC	2 cut(s)	542, 666
Eco53kI	GAGCTC	1 cut(s)	103
EcoICRI	GAGCTC	1 cut(s)	103
EcoRII	CCWGG	1 cut(s)	633
EcoT14I	CCWWGG	1 cut(s)	669
EcoT38I	GRGCYC	1 cut(s)	105
ErhI	CCWWGG	1 cut(s)	669
FaeI	CATG	2 cut(s)	524, 673
FaiI	YATR	6 cut(s)	165, 265, 435, 522, 613, 671
FatI	CATG	2 cut(s)	520, 669
FauI	CCCGC	1 cut(s)	696
FbaI	TGATCA	1 cut(s)	655
Fnu4HI	GCNGC	3 cut(s)	175, 491, 645
FokI	GGATG	1 cut(s)	576
FriOI	GRGCYC	1 cut(s)	105
Fsp4HI	GCNGC	3 cut(s)	175, 491, 645
FspBI	CTAG	1 cut(s)	408
GlaI	GCGC	1 cut(s)	455
GluI	GCNGC	3 cut(s)	175, 491, 645
GsuI	CTGGAG	1 cut(s)	130
HapII	CCGG	1 cut(s)	545
HhaI	GCGC	1 cut(s)	456
Hin1II	CATG	2 cut(s)	524, 673
Hin6I	GCGC	1 cut(s)	454
HinP1I	GCGC	1 cut(s)	454
HindIII	AAGCTT	1 cut(s)	347
HinfI	GANTC	4 cut(s)	299, 370, 379, 581
HpaII	CCGG	1 cut(s)	545
HphI	GGTGA	2 cut(s)	379, 611
Hpy166II	GTNNAC	1 cut(s)	187
Hpy188I	TCNGA	2 cut(s)	502, 586
Hpy188III	TCNNGA	4 cut(s)	88, 197, 341, 374
Hpy8I	GTNNAC	1 cut(s)	187
HpyAV	CCTTC	2 cut(s)	70, 509
HpyCH4III	ACNGT	2 cut(s)	50, 209
HpyCH4IV	ACGT	1 cut(s)	183
HpyCH4V	TGCA	2 cut(s)	538, 696
HpyF10VI	GCNNNNNNNGC	3 cut(s)	109, 128, 709
HpyF3I	CTNAG	1 cut(s)	243
HpySE526I	ACGT	1 cut(s)	183
Hsp92II	CATG	2 cut(s)	524, 673
HspAI	GCGC	1 cut(s)	454
KpnI	GGTACC	1 cut(s)	208
Ksp22I	TGATCA	1 cut(s)	655
Kzo9I	GATC	5 cut(s)	337, 436, 469, 616, 655
LmnI	GCTCC	1 cut(s)	681
LpnPI	CCDG	8 cut(s)	160, 215, 368, 558, 620, 639, 647, 713
Lsp1109I	GCAGC	3 cut(s)	186, 502, 656
LweI	GCATC	2 cut(s)	109, 598
MaeI	CTAG	1 cut(s)	408
MaeII	ACGT	1 cut(s)	183
MaeIII	GTNAC	2 cut(s)	55, 689
MalI	GATC	5 cut(s)	339, 438, 471, 618, 657
MbiI	CCGCTC	1 cut(s)	202
MboI	GATC	5 cut(s)	337, 436, 469, 616, 655
MboII	GAAGA	5 cut(s)	84, 296, 347, 458, 524
MflI	RGATCY	1 cut(s)	337
MhlI	GDGCHC	2 cut(s)	105, 114
MluCI	AATT	3 cut(s)	192, 281, 362
MlyI	GAGTC	1 cut(s)	308
MnlI	CCTC	6 cut(s)	143, 154, 265, 312, 502, 657
MroXI	GAANNNNTTC	1 cut(s)	348
MseI	TTAA	2 cut(s)	284, 718
MslI	CAYNNNNRTG	1 cut(s)	182
MspA1I	CMGCKG	2 cut(s)	647, 703
MspI	CCGG	1 cut(s)	545
MspR9I	CCNGG	2 cut(s)	546, 635
MvaI	CCWGG	1 cut(s)	635
MwoI	GCNNNNNNNGC	3 cut(s)	109, 128, 709
NciI	CCSGG	1 cut(s)	546
NcoI	CCATGG	1 cut(s)	669
NdeII	GATC	5 cut(s)	337, 436, 469, 616, 655
NlaIII	CATG	2 cut(s)	524, 673
NlaIV	GGNNCC	1 cut(s)	206
NmuCI	GTSAC	1 cut(s)	55
OliI	CACNNNNGTG	1 cut(s)	182
PdmI	GAANNNNTTC	1 cut(s)	348
PfeI	GAWTC	3 cut(s)	370, 379, 581
PflFI	GACNNNGTC	1 cut(s)	522
PfoI	TCCNGGA	1 cut(s)	544
PkrI	GCNGC	3 cut(s)	176, 492, 646
PleI	GAGTC	1 cut(s)	307
PpsI	GAGTC	1 cut(s)	307
Psp124BI	GAGCTC	1 cut(s)	105
Psp6I	CCWGG	1 cut(s)	633
PspGI	CCWGG	1 cut(s)	633
PspN4I	GGNNCC	1 cut(s)	206
PspPI	GGNCC	2 cut(s)	542, 666
PsuI	RGATCY	1 cut(s)	337
PsyI	GACNNNGTC	1 cut(s)	522
PvuII	CAGCTG	1 cut(s)	647
RsaI	GTAC	1 cut(s)	206
RsaNI	GTAC	1 cut(s)	205
RseI	CAYNNNNRTG	1 cut(s)	182
SacI	GAGCTC	1 cut(s)	105
SaqAI	TTAA	2 cut(s)	284, 718
SatI	GCNGC	3 cut(s)	175, 491, 645
Sau3AI	GATC	5 cut(s)	337, 436, 469, 616, 655
Sau96I	GGNCC	2 cut(s)	542, 666
SchI	GAGTC	1 cut(s)	308
ScrFI	CCNGG	2 cut(s)	546, 635
SduI	GDGCHC	2 cut(s)	105, 114
SfaNI	GCATC	2 cut(s)	109, 598
SinI	GGWCC	2 cut(s)	542, 666
SmiMI	CAYNNNNRTG	1 cut(s)	182
SmlI	CTYRAG	4 cut(s)	86, 197, 374, 506
SmoI	CTYRAG	4 cut(s)	86, 197, 374, 506
Sse9I	AATT	3 cut(s)	192, 281, 362
SsiI	CCGC	2 cut(s)	202, 703
SspMI	CTAG	1 cut(s)	408
SstI	GAGCTC	1 cut(s)	105
StyD4I	CCNGG	2 cut(s)	544, 633
StyI	CCWWGG	1 cut(s)	669
TaaI	ACNGT	2 cut(s)	50, 209
TaiI	ACGT	1 cut(s)	186
TaqI	TCGA	1 cut(s)	439
TasI	AATT	3 cut(s)	192, 281, 362
TfiI	GAWTC	3 cut(s)	370, 379, 581
Tru1I	TTAA	2 cut(s)	284, 718
Tru9I	TTAA	2 cut(s)	284, 718
TscAI	CASTG	3 cut(s)	157, 184, 540
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	3 cut(s)	174, 490, 644
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	1 cut(s)	264
TspGWI	ACGGA	1 cut(s)	437
TspRI	CASTG	3 cut(s)	157, 184, 540
Tth111I	GACNNNGTC	1 cut(s)	522
VpaK11BI	GGWCC	2 cut(s)	542, 666
XapI	RAATTY	1 cut(s)	192
XmnI	GAANNNNTTC	1 cut(s)	348
XspI	CTAG	1 cut(s)	408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.