Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0009666

Physical Location & Seq

Genomic Coordinates Forward (+)

29171563 .. 29178182

Gene Structure 6620 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1192400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGGGAGAGGGAGAGTGGTTATGGAGAGAATAAAGAACAATATCAACCGTCAGGTGACCTTCACAAAACGCAGGAACGGTCTGCGCAAGAAAGCTCATGAGCTCTCTGTGCTTTGTGATGCCCAAGTTGCAGTTATCATCTACTCCAGCCGTGGGAAGCTCTATGAGTTCTGCAGCACCGACATGAACAAAATCCTTGAGCAGTACCGTCAAAGTTGCTATTCCTCACAGGACAATGTTGCTGAGAACGAAACACAGAACATATGCCAAGAGGTCTCAAGATTAAAGGTCAAACACGAGTCTCTTCAACGTTCACAGAGGCATTTGCTTGGAGAAGATCTGCAACAGCTTCGCCTTAAAGAACTGCTTGTTCTTGAGAAACGACTTGACAGAACTCTCTCAAAAGCTAGACAAGAAAAGACGCGGATGATGTTTAATCAACTAGAAGAACTGCGCACAAAGGGGTTAATAAACAGCTTAAACGTGAGCTTCAAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009553 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0010016 GO:0010022 GO:0010073 GO:0010093 GO:0010094 GO:0010154 GO:0010468 GO:0010556 GO:0010557 GO:0010582 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0035670 GO:0040007 GO:0045893 GO:0045935 GO:0046983 GO:0048229 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048439 GO:0048440 GO:0048443 GO:0048444 GO:0048445 GO:0048448 GO:0048449 GO:0048455 GO:0048457 GO:0048459 GO:0048461 GO:0048462 GO:0048466 GO:0048467 GO:0048481 GO:0048507 GO:0048509 GO:0048518 GO:0048522 GO:0048532 GO:0048589 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048832 GO:0048833 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0080060 GO:0080090 GO:0080112 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

167

Amino Acids

19.57

Weight (kDa)

9.97

Isoelectric Point (pI)

50.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	4.7e-25	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	81 - 155	2.2e-19	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009666)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g11290 FvH4_3g11290 FvH4_3g11290 FvH4_3g11290 FvH4_7g28690 FvH4_7g28690 FvH4_7g28690
malus_domestica	MD01G1192400.v1.1
prunus_persica	Prupe.2G287000_v2.0.a1 Prupe.2G287000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0376191
rosa_laevigata	RLG00000026622
rosa_multiflora	Rmu_ssc0000116.1_g000053
rosa_roxburghii	Rroxscaffold_4G00282320
rosa_rugosa	Rorug01G0394300
rosa_samantha	Rh1AG405900 Rh1BG369600 Rh1CG382300 Rh1CG382500 Rh1DG399200 Rh1DG399400
rosa_wichuraiana	Rw1G036010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	86, 455
AccII	CGCG	1 cut(s)	424
AciI	CCGC	1 cut(s)	424
AclI	AACGTT	1 cut(s)	310
AfaI	GTAC	1 cut(s)	206
AfiI	CCNNNNNNNGG	1 cut(s)	153
AgsI	TTSAA	2 cut(s)	308, 493
AluBI	AGCT	7 cut(s)	95, 103, 160, 349, 407, 477, 489
AluI	AGCT	7 cut(s)	95, 103, 160, 349, 407, 477, 489
Alw21I	GWGCWC	1 cut(s)	105
Alw26I	GTCTC	2 cut(s)	280, 306
ApeKI	GCWGC	1 cut(s)	174
AspLEI	GCGC	2 cut(s)	87, 456
AsuHPI	GGTGA	1 cut(s)	67
BanII	GRGCYC	1 cut(s)	105
BauI	CACGAG	1 cut(s)	296
Bbv12I	GWGCWC	1 cut(s)	105
BbvI	GCAGC	1 cut(s)	186
BceAI	ACGGC	1 cut(s)	135
BcgI	CGANNNNNNTGC	2 cut(s)	332, 366
BcoDI	GTCTC	2 cut(s)	280, 306
BfaI	CTAG	2 cut(s)	408, 443
BfmI	CTRYAG	1 cut(s)	172
BglII	AGATCT	1 cut(s)	337
BisI	GCNGC	1 cut(s)	175
BlsI	GCNGC	1 cut(s)	176
BmsI	GCATC	1 cut(s)	109
BpmI	CTGGAG	1 cut(s)	130
BpuEI	CTTGAG	3 cut(s)	218, 262, 395
BsaI	GGTCTC	1 cut(s)	280
BsaJI	CCNNGG	1 cut(s)	151
Bsc4I	CCNNNNNNNGG	1 cut(s)	153
BseDI	CCNNGG	1 cut(s)	151
BseGI	GGATG	1 cut(s)	432
BseLI	CCNNNNNNNGG	1 cut(s)	153
BseMII	CTCAG	1 cut(s)	234
BseXI	GCAGC	1 cut(s)	186
Bsh1236I	CGCG	1 cut(s)	424
BsiHKAI	GWGCWC	1 cut(s)	105
BslI	CCNNNNNNNGG	1 cut(s)	153
BsmAI	GTCTC	2 cut(s)	280, 306
Bso31I	GGTCTC	1 cut(s)	280
Bsp1286I	GDGCHC	1 cut(s)	105
Bsp143I	GATC	1 cut(s)	337
BspACI	CCGC	1 cut(s)	424
BspCNI	CTCAG	1 cut(s)	235
BspFNI	CGCG	1 cut(s)	424
BspHI	TCATGA	1 cut(s)	97
BspMAI	CTGCAG	1 cut(s)	176
BspTNI	GGTCTC	1 cut(s)	280
BssECI	CCNNGG	1 cut(s)	151
BssMI	GATC	1 cut(s)	337
BssSI	CACGAG	1 cut(s)	296
Bst2BI	CACGAG	1 cut(s)	296
Bst4CI	ACNGT	3 cut(s)	50, 80, 209
Bst6I	CTCTTC	1 cut(s)	309
BstDEI	CTNAG	1 cut(s)	243
BstDSI	CCRYGG	1 cut(s)	151
BstEII	GGTNACC	1 cut(s)	55
BstF5I	GGATG	1 cut(s)	432
BstFNI	CGCG	1 cut(s)	424
BstHHI	GCGC	2 cut(s)	87, 456
BstKTI	GATC	1 cut(s)	340
BstMAI	GTCTC	2 cut(s)	280, 306
BstMBI	GATC	1 cut(s)	337
BstMWI	GCNNNNNNNGC	2 cut(s)	109, 128
BstPI	GGTNACC	1 cut(s)	55
BstSFI	CTRYAG	1 cut(s)	172
BstUI	CGCG	1 cut(s)	424
BstV1I	GCAGC	1 cut(s)	186
BstX2I	RGATCY	1 cut(s)	337
BstYI	RGATCY	1 cut(s)	337
BtgI	CCRYGG	1 cut(s)	151
BtsCI	GGATG	1 cut(s)	432
CciI	TCATGA	1 cut(s)	97
CfoI	GCGC	2 cut(s)	87, 456
CseI	GACGC	1 cut(s)	430
Csp6I	GTAC	1 cut(s)	205
CviAII	CATG	2 cut(s)	98, 184
CviJI	RGCY	8 cut(s)	95, 103, 150, 160, 349, 407, 477, 489
CviKI_1	RGCY	8 cut(s)	95, 103, 150, 160, 349, 407, 477, 489
CviQI	GTAC	1 cut(s)	205
DdeI	CTNAG	1 cut(s)	243
DpnI	GATC	1 cut(s)	339
DpnII	GATC	1 cut(s)	337
Eam1104I	CTCTTC	1 cut(s)	309
EarI	CTCTTC	1 cut(s)	309
Ecl136II	GAGCTC	1 cut(s)	103
Eco24I	GRGCYC	1 cut(s)	105
Eco31I	GGTCTC	1 cut(s)	280
Eco53kI	GAGCTC	1 cut(s)	103
Eco91I	GGTNACC	1 cut(s)	55
EcoICRI	GAGCTC	1 cut(s)	103
EcoO65I	GGTNACC	1 cut(s)	55
EcoT38I	GRGCYC	1 cut(s)	105
FaeI	CATG	2 cut(s)	101, 187
FaiI	YATR	6 cut(s)	23, 99, 165, 185, 263, 265
FalI	AAGNNNNNCTT	2 cut(s)	351, 383
FatI	CATG	2 cut(s)	97, 183
FauNDI	CATATG	1 cut(s)	263
Fnu4HI	GCNGC	1 cut(s)	175
FokI	GGATG	1 cut(s)	439
FriOI	GRGCYC	1 cut(s)	105
Fsp4HI	GCNGC	1 cut(s)	175
FspBI	CTAG	2 cut(s)	408, 443
FspI	TGCGCA	2 cut(s)	86, 455
GlaI	GCGC	2 cut(s)	86, 455
GluI	GCNGC	1 cut(s)	175
GsuI	CTGGAG	1 cut(s)	130
HgaI	GACGC	1 cut(s)	430
HhaI	GCGC	2 cut(s)	87, 456
Hin1II	CATG	2 cut(s)	101, 187
Hin6I	GCGC	2 cut(s)	85, 454
HinP1I	GCGC	2 cut(s)	85, 454
HinfI	GANTC	1 cut(s)	299
HphI	GGTGA	1 cut(s)	67
Hpy166II	GTNNAC	1 cut(s)	314
Hpy188III	TCNNGA	4 cut(s)	98, 279, 374, 493
Hpy8I	GTNNAC	1 cut(s)	314
HpyAV	CCTTC	1 cut(s)	70
HpyCH4III	ACNGT	3 cut(s)	50, 80, 209
HpyCH4IV	ACGT	2 cut(s)	310, 483
HpyCH4V	TGCA	3 cut(s)	131, 174, 343
HpyF10VI	GCNNNNNNNGC	2 cut(s)	109, 128
HpyF3I	CTNAG	1 cut(s)	243
HpySE526I	ACGT	2 cut(s)	310, 483
Hsp92II	CATG	2 cut(s)	101, 187
HspAI	GCGC	2 cut(s)	85, 454
Kzo9I	GATC	1 cut(s)	337
LpnPI	CCDG	4 cut(s)	38, 58, 160, 215
Lsp1109I	GCAGC	1 cut(s)	186
LweI	GCATC	1 cut(s)	109
MaeI	CTAG	2 cut(s)	408, 443
MaeII	ACGT	2 cut(s)	310, 483
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	1 cut(s)	339
MboI	GATC	1 cut(s)	337
MboII	GAAGA	3 cut(s)	296, 347, 458
MflI	RGATCY	1 cut(s)	337
MhlI	GDGCHC	1 cut(s)	105
MlyI	GAGTC	1 cut(s)	308
MnlI	CCTC	3 cut(s)	235, 265, 312
MseI	TTAA	5 cut(s)	284, 357, 435, 467, 479
MslI	CAYNNNNRTG	1 cut(s)	182
MvnI	CGCG	1 cut(s)	424
MwoI	GCNNNNNNNGC	2 cut(s)	109, 128
NdeI	CATATG	1 cut(s)	263
NdeII	GATC	1 cut(s)	337
NlaIII	CATG	2 cut(s)	101, 187
NmuCI	GTSAC	1 cut(s)	55
NsbI	TGCGCA	2 cut(s)	86, 455
PagI	TCATGA	1 cut(s)	97
PkrI	GCNGC	1 cut(s)	176
PleI	GAGTC	1 cut(s)	307
PpsI	GAGTC	1 cut(s)	307
Psp124BI	GAGCTC	1 cut(s)	105
Psp1406I	AACGTT	1 cut(s)	310
PspEI	GGTNACC	1 cut(s)	55
PstI	CTGCAG	1 cut(s)	176
PsuI	RGATCY	1 cut(s)	337
RsaI	GTAC	1 cut(s)	206
RsaNI	GTAC	1 cut(s)	205
RseI	CAYNNNNRTG	1 cut(s)	182
SacI	GAGCTC	1 cut(s)	105
SaqAI	TTAA	5 cut(s)	284, 357, 435, 467, 479
SatI	GCNGC	1 cut(s)	175
Sau3AI	GATC	1 cut(s)	337
SchI	GAGTC	1 cut(s)	308
SduI	GDGCHC	1 cut(s)	105
SfaNI	GCATC	1 cut(s)	109
SfcI	CTRYAG	1 cut(s)	172
SmiMI	CAYNNNNRTG	1 cut(s)	182
SmlI	CTYRAG	3 cut(s)	197, 277, 374
SmoI	CTYRAG	3 cut(s)	197, 277, 374
SsiI	CCGC	1 cut(s)	424
SspMI	CTAG	2 cut(s)	408, 443
SstI	GAGCTC	1 cut(s)	105
TaaI	ACNGT	3 cut(s)	50, 80, 209
TaiI	ACGT	2 cut(s)	313, 486
Tru1I	TTAA	5 cut(s)	284, 357, 435, 467, 479
Tru9I	TTAA	5 cut(s)	284, 357, 435, 467, 479
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	1 cut(s)	174
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	1 cut(s)	200
XspI	CTAG	2 cut(s)	408, 443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.