Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0009666

Physical Location & Seq

Genomic Coordinates Forward (+)

50000490 .. 50002720

Gene Structure 2231 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG369600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGTTTAGGCATTTTCTTGGAGAAGATCTTGAAAAACTTTGTCTGAAAGAATTGGAAAATCTTGAGAAACAGCTTGACAGAACTCTTTCACAAGCTAGACAAAGGAAGATGCAGATGATGTTAGATCAATTAGAAGCACTACACAGAAAGGAGAATGATCTTGAAGAGATACATAAGCAGCTAAAATCTGAGCTTGAAGAAAGGGAAAAACATAGCGACAATGATGATGATGAAGCATTAATTAAAGGTCGTCCAGGAGGAGAGCCTACTGTAGCTGCTGGAGCTTCTCATGAAAACATTTCTACTAAAACGCGCTCTGCAAATGCTAATCAGCAAGAGCCCACTTATGAATATGTTCGGCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009553 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0010016 GO:0010022 GO:0010073 GO:0010093 GO:0010094 GO:0010154 GO:0010468 GO:0010556 GO:0010557 GO:0010582 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0035670 GO:0040007 GO:0045893 GO:0045935 GO:0046983 GO:0048229 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048439 GO:0048440 GO:0048443 GO:0048444 GO:0048445 GO:0048448 GO:0048449 GO:0048455 GO:0048457 GO:0048459 GO:0048461 GO:0048462 GO:0048466 GO:0048467 GO:0048481 GO:0048507 GO:0048509 GO:0048518 GO:0048522 GO:0048532 GO:0048589 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048832 GO:0048833 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0080060 GO:0080090 GO:0080112 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

121

Amino Acids

14.1

Weight (kDa)

5.27

Isoelectric Point (pI)

44.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
K-box	PF01486	3 - 65	1e-17	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0009666)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g11290 FvH4_3g11290 FvH4_3g11290 FvH4_3g11290 FvH4_7g28690 FvH4_7g28690 FvH4_7g28690
malus_domestica	MD01G1192400.v1.1
prunus_persica	Prupe.2G287000_v2.0.a1 Prupe.2G287000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0376191
rosa_laevigata	RLG00000026622
rosa_multiflora	Rmu_ssc0000116.1_g000053
rosa_roxburghii	Rroxscaffold_4G00282320
rosa_rugosa	Rorug01G0394300
rosa_samantha	Rh1AG405900 Rh1BG369600 Rh1CG382300 Rh1CG382500 Rh1DG399200 Rh1DG399400
rosa_wichuraiana	Rw1G036010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	313
AcoI	YGGCCR	1 cut(s)	359
AgsI	TTSAA	3 cut(s)	32, 164, 197
AjnI	CCWGG	1 cut(s)	253
AluBI	AGCT	6 cut(s)	73, 95, 181, 193, 275, 284
AluI	AGCT	6 cut(s)	73, 95, 181, 193, 275, 284
AoxI	GGCC	1 cut(s)	359
ApeKI	GCWGC	2 cut(s)	178, 275
AseI	ATTAAT	1 cut(s)	239
Asp700I	GAANNNNTTC	2 cut(s)	85, 354
AspLEI	GCGC	1 cut(s)	315
BanII	GRGCYC	1 cut(s)	342
BbvI	GCAGC	2 cut(s)	190, 262
BceAI	ACGGC	1 cut(s)	346
BciT130I	CCWGG	1 cut(s)	255
BfaI	CTAG	1 cut(s)	96
BfmI	CTRYAG	1 cut(s)	270
BglII	AGATCT	1 cut(s)	25
BisI	GCNGC	2 cut(s)	179, 276
BlsI	GCNGC	2 cut(s)	180, 277
Bme1390I	CCNGG	1 cut(s)	255
BmrFI	CCNGG	1 cut(s)	255
BmsI	GCATC	1 cut(s)	99
BpmI	CTGGAG	1 cut(s)	300
BpuEI	CTTGAG	1 cut(s)	83
BseBI	CCWGG	1 cut(s)	255
BseMII	CTCAG	1 cut(s)	180
BseRI	GAGGAG	1 cut(s)	273
BseX3I	CGGCCG	1 cut(s)	359
BseXI	GCAGC	2 cut(s)	190, 262
Bsh1236I	CGCG	1 cut(s)	313
Bsh1285I	CGRYCG	1 cut(s)	362
BshFI	GGCC	1 cut(s)	361
BsiEI	CGRYCG	1 cut(s)	362
BsnI	GGCC	1 cut(s)	361
Bsp1286I	GDGCHC	1 cut(s)	342
Bsp143I	GATC	3 cut(s)	25, 124, 157
BspANI	GGCC	1 cut(s)	361
BspCNI	CTCAG	1 cut(s)	181
BspFNI	CGCG	1 cut(s)	313
BspHI	TCATGA	1 cut(s)	289
BssMI	GATC	3 cut(s)	25, 124, 157
Bst2UI	CCWGG	1 cut(s)	255
Bst4CI	ACNGT	1 cut(s)	271
Bst6I	CTCTTC	1 cut(s)	159
BstDEI	CTNAG	1 cut(s)	189
BstFNI	CGCG	1 cut(s)	313
BstHHI	GCGC	1 cut(s)	315
BstKTI	GATC	3 cut(s)	28, 127, 160
BstMBI	GATC	3 cut(s)	25, 124, 157
BstMCI	CGRYCG	1 cut(s)	362
BstMWI	GCNNNNNNNGC	1 cut(s)	281
BstNI	CCWGG	1 cut(s)	255
BstSCI	CCNGG	1 cut(s)	253
BstSFI	CTRYAG	1 cut(s)	270
BstUI	CGCG	1 cut(s)	313
BstV1I	GCAGC	2 cut(s)	190, 262
BstX2I	RGATCY	1 cut(s)	25
BstYI	RGATCY	1 cut(s)	25
BstZI	CGGCCG	1 cut(s)	359
BsuRI	GGCC	1 cut(s)	361
CciI	TCATGA	1 cut(s)	289
CfoI	GCGC	1 cut(s)	315
CviAII	CATG	1 cut(s)	290
CviJI	RGCY	9 cut(s)	73, 95, 181, 193, 265, 275, 284, 340, 361
CviKI_1	RGCY	9 cut(s)	73, 95, 181, 193, 265, 275, 284, 340, 361
DdeI	CTNAG	1 cut(s)	189
DpnI	GATC	3 cut(s)	27, 126, 159
DpnII	GATC	3 cut(s)	25, 124, 157
EaeI	YGGCCR	1 cut(s)	359
EagI	CGGCCG	1 cut(s)	359
Eam1104I	CTCTTC	1 cut(s)	159
EarI	CTCTTC	1 cut(s)	159
EclXI	CGGCCG	1 cut(s)	359
Eco24I	GRGCYC	1 cut(s)	342
Eco52I	CGGCCG	1 cut(s)	359
EcoRII	CCWGG	1 cut(s)	253
EcoT38I	GRGCYC	1 cut(s)	342
FaeI	CATG	1 cut(s)	293
FaiI	YATR	5 cut(s)	174, 213, 291, 348, 354
FatI	CATG	1 cut(s)	289
Fnu4HI	GCNGC	2 cut(s)	179, 276
FriOI	GRGCYC	1 cut(s)	342
Fsp4HI	GCNGC	2 cut(s)	179, 276
FspBI	CTAG	1 cut(s)	96
GlaI	GCGC	1 cut(s)	314
GluI	GCNGC	2 cut(s)	179, 276
GsuI	CTGGAG	1 cut(s)	300
HaeIII	GGCC	1 cut(s)	361
HhaI	GCGC	1 cut(s)	315
Hin1II	CATG	1 cut(s)	293
Hin6I	GCGC	1 cut(s)	313
HinP1I	GCGC	1 cut(s)	313
Hpy188I	TCNGA	2 cut(s)	45, 190
Hpy188III	TCNNGA	4 cut(s)	29, 62, 161, 290
HpyCH4III	ACNGT	1 cut(s)	271
HpyCH4V	TGCA	2 cut(s)	112, 320
HpyF10VI	GCNNNNNNNGC	1 cut(s)	281
HpyF3I	CTNAG	1 cut(s)	189
Hsp92II	CATG	1 cut(s)	293
HspAI	GCGC	1 cut(s)	313
Kzo9I	GATC	3 cut(s)	25, 124, 157
LmnI	GCTCC	1 cut(s)	281
LpnPI	CCDG	3 cut(s)	240, 264, 267
Lsp1109I	GCAGC	2 cut(s)	190, 262
LweI	GCATC	1 cut(s)	99
MaeI	CTAG	1 cut(s)	96
MalI	GATC	3 cut(s)	27, 126, 159
MboI	GATC	3 cut(s)	25, 124, 157
MboII	GAAGA	4 cut(s)	35, 118, 176, 209
MflI	RGATCY	1 cut(s)	25
MhlI	GDGCHC	1 cut(s)	342
MluCI	AATT	3 cut(s)	50, 128, 240
MnlI	CCTC	1 cut(s)	251
MroXI	GAANNNNTTC	2 cut(s)	85, 354
MseI	TTAA	2 cut(s)	239, 243
MspR9I	CCNGG	1 cut(s)	255
MvaI	CCWGG	1 cut(s)	255
MvnI	CGCG	1 cut(s)	313
MwoI	GCNNNNNNNGC	1 cut(s)	281
NdeII	GATC	3 cut(s)	25, 124, 157
NlaIII	CATG	1 cut(s)	293
PacI	TTAATTAA	1 cut(s)	243
PagI	TCATGA	1 cut(s)	289
PdmI	GAANNNNTTC	2 cut(s)	85, 354
PfoI	TCCNGGA	1 cut(s)	253
PkrI	GCNGC	2 cut(s)	180, 277
PshBI	ATTAAT	1 cut(s)	239
Psp6I	CCWGG	1 cut(s)	253
PspGI	CCWGG	1 cut(s)	253
PsuI	RGATCY	1 cut(s)	25
SaqAI	TTAA	2 cut(s)	239, 243
SatI	GCNGC	2 cut(s)	179, 276
Sau3AI	GATC	3 cut(s)	25, 124, 157
ScrFI	CCNGG	1 cut(s)	255
SduI	GDGCHC	1 cut(s)	342
SetI	ASST	7 cut(s)	75, 97, 183, 195, 250, 277, 286
SfaNI	GCATC	1 cut(s)	99
SfcI	CTRYAG	1 cut(s)	270
SmlI	CTYRAG	1 cut(s)	62
SmoI	CTYRAG	1 cut(s)	62
Sse9I	AATT	3 cut(s)	50, 128, 240
SspMI	CTAG	1 cut(s)	96
StyD4I	CCNGG	1 cut(s)	253
TaaI	ACNGT	1 cut(s)	271
TasI	AATT	3 cut(s)	50, 128, 240
Tru1I	TTAA	2 cut(s)	239, 243
Tru9I	TTAA	2 cut(s)	239, 243
TseI	GCWGC	2 cut(s)	178, 275
TspDTI	ATGAA	3 cut(s)	246, 306, 363
VspI	ATTAAT	1 cut(s)	239
XmnI	GAANNNNTTC	2 cut(s)	85, 354
XspI	CTAG	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.