Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0009666

Physical Location & Seq

Genomic Coordinates Forward (+)

61918516 .. 61929442

Gene Structure 10927 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG399400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGAACTTATATCAAGAAGTCTCAAGATTGAAAGTCAAATATGAATCTCTTCAGCGTTCGCAAAGGCATTTTCTTGGAGAAGATCTTGAAAAACTTCGTCTGAAAGAATTGGAAAATCTTGAGAAACAGCTTGACAGAACTCTTTCACAAGCTAGACAAAGGAAGATTCAGATGATGTTAGATCAATTAGAAGCACTAGGCAGAAAGGAGAATGATCTTGAAGAGATACATAAGCAGCTAAAATCTGAGCTTGAAGAAAGGGAAAAACATAGCGACAATGATGATGATGAAGCATTAATTCAAGGTCGTCTAGGAGGAGAGCCTACTGTAGCTGCTGGAGCTTCTCATGAAAACATTTCTACTAAAACGCGCTCTGCATACACTTATCAGCAAGAGCCCACCTTACACTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009553 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0010016 GO:0010022 GO:0010073 GO:0010093 GO:0010094 GO:0010154 GO:0010468 GO:0010556 GO:0010557 GO:0010582 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0035670 GO:0040007 GO:0045893 GO:0045935 GO:0046983 GO:0048229 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048439 GO:0048440 GO:0048443 GO:0048444 GO:0048445 GO:0048448 GO:0048449 GO:0048455 GO:0048457 GO:0048459 GO:0048461 GO:0048462 GO:0048466 GO:0048467 GO:0048481 GO:0048507 GO:0048509 GO:0048518 GO:0048522 GO:0048532 GO:0048589 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048832 GO:0048833 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0080060 GO:0080090 GO:0080112 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

137

Amino Acids

16.06

Weight (kDa)

5.6

Isoelectric Point (pI)

46.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
K-box	PF01486	2 - 84	2.6e-23	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009666)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g11290 FvH4_3g11290 FvH4_3g11290 FvH4_3g11290 FvH4_7g28690 FvH4_7g28690 FvH4_7g28690
malus_domestica	MD01G1192400.v1.1
prunus_persica	Prupe.2G287000_v2.0.a1 Prupe.2G287000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0376191
rosa_laevigata	RLG00000026622
rosa_multiflora	Rmu_ssc0000116.1_g000053
rosa_roxburghii	Rroxscaffold_4G00282320
rosa_rugosa	Rorug01G0394300
rosa_samantha	Rh1AG405900 Rh1BG369600 Rh1CG382300 Rh1CG382500 Rh1DG399200 Rh1DG399400
rosa_wichuraiana	Rw1G036010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	370
AcuI	CTGAAG	1 cut(s)	35
AgsI	TTSAA	5 cut(s)	31, 89, 221, 254, 302
AluBI	AGCT	6 cut(s)	130, 152, 238, 250, 332, 341
AluI	AGCT	6 cut(s)	130, 152, 238, 250, 332, 341
Alw26I	GTCTC	1 cut(s)	25
ApeKI	GCWGC	2 cut(s)	235, 332
AseI	ATTAAT	1 cut(s)	296
Asp700I	GAANNNNTTC	3 cut(s)	48, 93, 142
AspLEI	GCGC	1 cut(s)	372
BanII	GRGCYC	1 cut(s)	399
BbvI	GCAGC	2 cut(s)	247, 319
BcoDI	GTCTC	1 cut(s)	25
BfaI	CTAG	3 cut(s)	153, 197, 311
BfmI	CTRYAG	1 cut(s)	327
BglII	AGATCT	1 cut(s)	82
BisI	GCNGC	2 cut(s)	236, 333
BlsI	GCNGC	2 cut(s)	237, 334
BpmI	CTGGAG	1 cut(s)	357
BpuEI	CTTGAG	2 cut(s)	7, 140
BseMII	CTCAG	1 cut(s)	237
BseRI	GAGGAG	1 cut(s)	330
BseXI	GCAGC	2 cut(s)	247, 319
Bsh1236I	CGCG	1 cut(s)	370
BsmAI	GTCTC	1 cut(s)	25
Bsp1286I	GDGCHC	1 cut(s)	399
Bsp143I	GATC	3 cut(s)	82, 181, 214
BspCNI	CTCAG	1 cut(s)	238
BspFNI	CGCG	1 cut(s)	370
BspHI	TCATGA	1 cut(s)	346
BssMI	GATC	3 cut(s)	82, 181, 214
Bst4CI	ACNGT	1 cut(s)	328
Bst6I	CTCTTC	2 cut(s)	54, 216
BstDEI	CTNAG	1 cut(s)	246
BstFNI	CGCG	1 cut(s)	370
BstHHI	GCGC	1 cut(s)	372
BstKTI	GATC	3 cut(s)	85, 184, 217
BstMAI	GTCTC	1 cut(s)	25
BstMBI	GATC	3 cut(s)	82, 181, 214
BstMWI	GCNNNNNNNGC	1 cut(s)	338
BstSFI	CTRYAG	1 cut(s)	327
BstUI	CGCG	1 cut(s)	370
BstV1I	GCAGC	2 cut(s)	247, 319
BstX2I	RGATCY	1 cut(s)	82
BstYI	RGATCY	1 cut(s)	82
CciI	TCATGA	1 cut(s)	346
CfoI	GCGC	1 cut(s)	372
CviAII	CATG	1 cut(s)	347
CviJI	RGCY	8 cut(s)	130, 152, 238, 250, 322, 332, 341, 397
CviKI_1	RGCY	8 cut(s)	130, 152, 238, 250, 322, 332, 341, 397
DdeI	CTNAG	1 cut(s)	246
DpnI	GATC	3 cut(s)	84, 183, 216
DpnII	GATC	3 cut(s)	82, 181, 214
Eam1104I	CTCTTC	2 cut(s)	54, 216
EarI	CTCTTC	2 cut(s)	54, 216
Eco24I	GRGCYC	1 cut(s)	399
Eco57I	CTGAAG	1 cut(s)	35
EcoT38I	GRGCYC	1 cut(s)	399
FaeI	CATG	1 cut(s)	350
FaiI	YATR	7 cut(s)	10, 42, 231, 270, 348, 379, 412
FatI	CATG	1 cut(s)	346
Fnu4HI	GCNGC	2 cut(s)	236, 333
FriOI	GRGCYC	1 cut(s)	399
Fsp4HI	GCNGC	2 cut(s)	236, 333
FspBI	CTAG	3 cut(s)	153, 197, 311
GlaI	GCGC	1 cut(s)	371
GluI	GCNGC	2 cut(s)	236, 333
GsuI	CTGGAG	1 cut(s)	357
HhaI	GCGC	1 cut(s)	372
Hin1II	CATG	1 cut(s)	350
Hin6I	GCGC	1 cut(s)	370
HinP1I	GCGC	1 cut(s)	370
HinfI	GANTC	2 cut(s)	44, 166
Hpy188I	TCNGA	3 cut(s)	102, 171, 247
Hpy188III	TCNNGA	6 cut(s)	14, 24, 86, 119, 218, 347
HpyCH4III	ACNGT	1 cut(s)	328
HpyCH4V	TGCA	1 cut(s)	377
HpyF10VI	GCNNNNNNNGC	1 cut(s)	338
HpyF3I	CTNAG	1 cut(s)	246
Hsp92II	CATG	1 cut(s)	350
HspAI	GCGC	1 cut(s)	370
Kzo9I	GATC	3 cut(s)	82, 181, 214
LmnI	GCTCC	1 cut(s)	338
LpnPI	CCDG	1 cut(s)	321
Lsp1109I	GCAGC	2 cut(s)	247, 319
MaeI	CTAG	3 cut(s)	153, 197, 311
MalI	GATC	3 cut(s)	84, 183, 216
MboI	GATC	3 cut(s)	82, 181, 214
MboII	GAAGA	5 cut(s)	41, 92, 175, 233, 266
MflI	RGATCY	1 cut(s)	82
MhlI	GDGCHC	1 cut(s)	399
MluCI	AATT	3 cut(s)	107, 185, 297
MnlI	CCTC	1 cut(s)	308
MroXI	GAANNNNTTC	3 cut(s)	48, 93, 142
MseI	TTAA	1 cut(s)	296
MvnI	CGCG	1 cut(s)	370
MwoI	GCNNNNNNNGC	1 cut(s)	338
NdeII	GATC	3 cut(s)	82, 181, 214
NlaIII	CATG	1 cut(s)	350
PagI	TCATGA	1 cut(s)	346
PdmI	GAANNNNTTC	3 cut(s)	48, 93, 142
PfeI	GAWTC	2 cut(s)	44, 166
PkrI	GCNGC	2 cut(s)	237, 334
PshBI	ATTAAT	1 cut(s)	296
PsuI	RGATCY	1 cut(s)	82
SaqAI	TTAA	1 cut(s)	296
SatI	GCNGC	2 cut(s)	236, 333
Sau3AI	GATC	3 cut(s)	82, 181, 214
SduI	GDGCHC	1 cut(s)	399
SetI	ASST	8 cut(s)	132, 154, 240, 252, 307, 334, 343, 404
SfcI	CTRYAG	1 cut(s)	327
SmlI	CTYRAG	2 cut(s)	22, 119
SmoI	CTYRAG	2 cut(s)	22, 119
Sse9I	AATT	3 cut(s)	107, 185, 297
SspMI	CTAG	3 cut(s)	153, 197, 311
TaaI	ACNGT	1 cut(s)	328
TasI	AATT	3 cut(s)	107, 185, 297
TfiI	GAWTC	2 cut(s)	44, 166
Tru1I	TTAA	1 cut(s)	296
Tru9I	TTAA	1 cut(s)	296
TseI	GCWGC	2 cut(s)	235, 332
TspDTI	ATGAA	4 cut(s)	17, 57, 303, 363
VspI	ATTAAT	1 cut(s)	296
XmnI	GAANNNNTTC	3 cut(s)	48, 93, 142
XspI	CTAG	3 cut(s)	153, 197, 311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.