Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0011291

Physical Location & Seq

Genomic Coordinates Forward (+)

6692377 .. 6698208

Gene Structure 5832 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g11350.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2655 bp

ATGGAATTGTCAAATGGGCAAGTGGTGTTCTCTAATTTTCAGAGGAATGGGGTTTTGGGTACGAATTGTAGCCAAAAGCCATTTCCTTTATCTGGGTTTTCGATTTGTGGGAGACCCTTTTTCGGTATTGGCTTAAATGAGAAGAATGTGAAGAGGAGCCGGGTTTCTGGTGTTAGAACAGTGAACCGTGGAAGTGTTGTTAGTGCTTTGGCGAAGGAAGGGACTGATAACCGGTCAATTGGTAGTGAAATTCTTGAGAAAGATTTTGAATTTAAGCCGTCGTTCGATCAATGCTTGAAGGTTATGGGGTCTGTTAAGCTTAGAAGTAACAAAGATAAGACGAGTAGGCCAAAAGAAGAGAATTTGAAGCATAATGTGAGGAGCAAAGATGTTCGGAGAAGACATTCTTCTGAGGCAGATGAAGAGAATTTAAAGTGGGGGGAGTCTGGAAGGCATTTGGATAAAAGGAATGTGTCAAAAGTTGCGAAACTATATGAAAATGCAAATGGATCCATGGAACAAAGCAAAAGGCCACGAGTTAGAGGGTACAAGGATGAATATGATAGCAGGCAGAGAAACATGGATGAAAAGGAAAAGATGAAGATAAGGGGAGATCCAAGAGATGCAAAATGGTCAAGATATACTGGTAGACTAGAACAAGAATTGGACTTCAACTCGGATAAGAGTGTAGTGGCACGAAATGCTAAAGAAAACCTGAGAGATTACAAGTCAACTGGTCAAGACTTCGAGAGAAGGAAAAGTGGTGTTAGAAGTGAAGATGGACATGAGAGGTACCGCATCAGTGCTGAGAAAGCCACTAATTATAGAAGTTTCTCTCCTAGAAGTGGAAATTCAACCAAGGGGGAAAGGGATTACCCTAGAAAAGACTATGATGAAAGAGCTGCGTTTAAGAATTATGATGAATGCAATGATATTATGGACAAACCAAGAGTTTCACAAATGCAAATGGAGGAGAGAATCCAGAAGCTAGCAAAGTCGCTGAATGGTGCAAATATCGACATCCCTGAGTGGATGTTTTCGAAGATGATGCGAAGTGCACAAATCATATTCACAGATCATTCGATACTTAGAGTTATTCAGATATTAGGAAAGTTCGGAAACTGGAGACGAGTGTTACAAGTCATCGAGTGGCTTCAAATGCGTGAGCGCTTCAAATCTCACAAGCTCAGATACATATATACAACTGCACTCGATGTACTTGGAAAGGCAAGGAGACCTGTGGAGGCATTTAATGTGTTTCAAGTAATGCTGCAACAACTGTCCTCATATCCTGACTTGGTGGCTTATCATTCCATTGCCATTACTCTTGGACAAGCGGGTCACATCAAAGAACTGTTTGATGTGATTGATACTATGCGATCTCCTCCCAAGAAGAAGTTCAAGACTGGAACACTTGGGAAGTGGGATCCTCGGTTGGAACCAGATGTCACTGTCTACAATGCAGTATTAAATGCTTGTGTTCAGCGGAAACAATGGGAAGGAGCATTTTGGGTTTTGGAGCAGTTAAAGAAACAAGGTGTGCAGCCTGCCACTACAACATATGGACTTGTCATGGAGGTGATGTTTGCATGTGGCAAGTACAATTTGGTTCACGAGTTTTTTAAGAAGATGCAGAAATCTTCAATACCAAATGCTTTAACTTACAGAGTTATTGTGAATACTCTTTGGAGAGAAGAAAAAATAGATGAGGCTGTGCAGACTGTTCGTGATATGGAAAGACGAGGAATAGTTGGTTCTGCAGCTCTTTATTATGATTTCGCTCGATGTCTTTGTAGTGGTGGAAGGTGTCAAGAAGCACTAATGCAGATTGAGAAGATATGTAAGGTTGCGAATAAACCTCTAGTAGTGACTTACACTGGTTTAATTCAAGCTTGTTTGGATGCTGGAAGCATTGAAAATGGTGCATATGTCTTCAACCAAATGGAGAACTTCTGCTCCCCAAATCTGGTCACTTGCAACATAATGTTGAAAGGCTACCTGGATCATGGGATGTATGAAGAAGCAAAAATGCTGTTCCAAAAGATGTTGGAAGATGGGTTCAACAGCAAATCTGGTTATGAGATCAGGGTGACACCAGATATCTATACATTCAACACTTTGTTAGAAGCATGCATCACAGATCAAAGGTGGGATGATTTTGAGTCTTTCTACAAAAGGATGCTGCAAAGTGGATATAACTTCAATATTAAACGACATCTTCGGATGATATTGGATGCTTGCAGAGCAGGAAAGGATGAGCTGCTGGATATAACCTGGGTGCACTTGACCGAGGCAGACCGAATTCCAACCCCTTCTCTCATCAAGGAAAGGTTTTGCAAAAAGCTGGAGGAAGGTAACTATCATGTTGCTATCTCCTGCATTGCCAAAACAAATCCCGATGATCTGCAGGCATTCTCAAAGACAGCGTGGCTGAATTTGTTCAAGGAAAATGCAGAAAGGTTTCACAAAGACACTCTTGTGCAGTTGGTTCGTGAGGTTAGCATTCTTACTGCCAAAAGTGATGAGGCTAACCCTGTATTTGAAAATCTTATGTTGTGTTGTAGAGAACTTGATAGAACTAGTGTGAGGACAGGTGACTTTAAACCAAATGAAAGTGTATATACTGTTCAAACTGAACCAGCTTATTATTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016070 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

885

Amino Acids

102.12

Weight (kDa)

9.15

Isoelectric Point (pI)

40.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	479 - 528	5.6e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	481 - 523	7.1e-08	PPR repeat family
PPR_2	PF13041	654 - 687	3.5e-07	PPR repeat family
PPR	PF01535	657 - 687	1.7e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011291)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30610 AT1G30610
fragaria_vesca	FvH4_3g11350
malus_domestica	MD05G1264100.v1.1 MD10G1242100.v1.1
prunus_persica	Prupe.4G101500_v2.0.a1
pyrus_communis	pycom05g24820
rosa_chinensis	RchiOBHm_Chr5g0018311
rosa_laevigata	RLG00000032350
rosa_multiflora	Rmu_sc0007362.1_g000034 Rmu_sc0011919.1_g000006 Rmu_sc0038151.1_g000001 Rmu_sc0038657.1_g000001
rosa_roxburghii	Rroxscaffold_1G00059430
rosa_rugosa	Rorug05G0041300
rosa_samantha	Rh5AG134400 Rh5BG133200 Rh5CG144900 Rh5DG134600
rosa_wichuraiana	Rw5G011750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1338
Acc65I	GGTACC	1 cut(s)	792
AccB1I	GGYRCC	1 cut(s)	792
AccI	GTMKAC	2 cut(s)	649, 1455
AciI	CCGC	3 cut(s)	796, 1337, 1486
AclWI	GGATC	6 cut(s)	504, 517, 608, 1421, 1434, 2010
AcsI	RAATTY	7 cut(s)	249, 269, 361, 427, 850, 2301, 2434
AfaI	GTAC	5 cut(s)	61, 548, 794, 1218, 1601
AfeI	AGCGCT	1 cut(s)	1169
AfiI	CCNNNNNNNGG	4 cut(s)	92, 122, 845, 1966
AgeI	ACCGGT	1 cut(s)	231
AhlI	ACTAGT	1 cut(s)	2579
AjnI	CCWGG	2 cut(s)	1998, 2273
AjuI	GAANNNNNNNTTGG	6 cut(s)	38, 66, 70, 98, 1382, 1414
AleI	CACNNNNGTG	1 cut(s)	2477
AloI	GAACNNNNNNTCC	4 cut(s)	1940, 1972, 2042, 2074
AluBI	AGCT	9 cut(s)	319, 902, 988, 1186, 1763, 1892, 2260, 2344, 2642
AluI	AGCT	9 cut(s)	319, 902, 988, 1186, 1763, 1892, 2260, 2344, 2642
Alw21I	GWGCWC	2 cut(s)	1060, 2283
Alw26I	GTCTC	3 cut(s)	106, 1120, 1228
Alw44I	GTGCAC	2 cut(s)	1056, 2279
AlwI	GGATC	6 cut(s)	504, 517, 608, 1421, 1434, 2010
Aor51HI	AGCGCT	1 cut(s)	1169
AoxI	GGCC	2 cut(s)	347, 530
ApaLI	GTGCAC	2 cut(s)	1056, 2279
ApeKI	GCWGC	6 cut(s)	902, 1270, 1543, 1760, 2182, 2260
ApoI	RAATTY	7 cut(s)	249, 269, 361, 427, 850, 2301, 2434
AsiGI	ACCGGT	1 cut(s)	231
Asp700I	GAANNNNTTC	4 cut(s)	403, 1397, 2438, 2460
Asp718I	GGTACC	1 cut(s)	792
AspLEI	GCGC	1 cut(s)	1170
AsuC2I	CCSGG	1 cut(s)	161
AsuHPI	GGTGA	3 cut(s)	1591, 2101, 2606
AsuII	TTCGAA	1 cut(s)	1040
AsuNHI	GCTAGC	1 cut(s)	988
BaeGI	GKGCMC	2 cut(s)	1060, 2283
BamHI	GGATCC	2 cut(s)	509, 1426
BanI	GGYRCC	1 cut(s)	792
BauI	CACGAG	2 cut(s)	534, 1613
BbsI	GAAGAC	2 cut(s)	406, 1924
Bbv12I	GWGCWC	2 cut(s)	1060, 2283
BbvI	GCAGC	6 cut(s)	889, 1257, 1555, 1772, 2169, 2247
BccI	CCATC	2 cut(s)	773, 2048
BceAI	ACGGC	1 cut(s)	262
BcgI	CGANNNNNNTGC	6 cut(s)	1030, 1064, 1706, 1740, 2471, 2505
BciT130I	CCWGG	2 cut(s)	2000, 2275
BcnI	CCSGG	1 cut(s)	161
BcoDI	GTCTC	3 cut(s)	106, 1120, 1228
BcuI	ACTAGT	1 cut(s)	2579
BfaI	CTAG	6 cut(s)	653, 840, 879, 989, 1862, 2580
BfmI	CTRYAG	2 cut(s)	1758, 2405
BfoI	RGCGCY	1 cut(s)	1171
BisI	GCNGC	6 cut(s)	903, 1271, 1544, 1761, 2183, 2261
BlsI	GCNGC	6 cut(s)	904, 1272, 1545, 1762, 2184, 2262
Bme1390I	CCNGG	3 cut(s)	161, 2000, 2275
BmiI	GGNNCC	5 cut(s)	158, 511, 794, 1428, 1440
BmrFI	CCNGG	3 cut(s)	161, 2000, 2275
BmsI	GCATC	8 cut(s)	613, 807, 1038, 1620, 1891, 2142, 2169, 2224
BmtI	GCTAGC	1 cut(s)	992
BpiI	GAAGAC	2 cut(s)	406, 1924
BpmI	CTGGAG	2 cut(s)	1144, 2366
Bpu14I	TTCGAA	1 cut(s)	1040
BpuEI	CTTGAG	1 cut(s)	275
BpuMI	CCSGG	1 cut(s)	161
BsaI	GGTCTC	2 cut(s)	106, 1228
BsaJI	CCNNGG	6 cut(s)	187, 513, 858, 1430, 2274, 2289
BsaWI	WCCGGW	1 cut(s)	231
BsaXI	ACNNNNNCTCC	4 cut(s)	1568, 1598, 1940, 1970
Bsc4I	CCNNNNNNNGG	4 cut(s)	92, 122, 845, 1966
Bse118I	RCCGGY	1 cut(s)	231
Bse1I	ACTGG	5 cut(s)	649, 739, 1127, 1411, 1882
Bse3DI	GCAATG	3 cut(s)	934, 1314, 2379
BseBI	CCWGG	2 cut(s)	2000, 2275
BseDI	CCNNGG	6 cut(s)	187, 513, 858, 1430, 2274, 2289
BseLI	CCNNNNNNNGG	4 cut(s)	92, 122, 845, 1966
BseMI	GCAATG	3 cut(s)	934, 1314, 2379
BseMII	CTCAG	5 cut(s)	402, 707, 798, 1017, 1201
BseNI	ACTGG	5 cut(s)	649, 739, 1127, 1411, 1882
BseRI	GAGGAG	4 cut(s)	169, 394, 986, 1374
BseSI	GKGCMC	2 cut(s)	1060, 2283
BseXI	GCAGC	6 cut(s)	889, 1257, 1555, 1772, 2169, 2247
BsgI	GTGCAG	4 cut(s)	1191, 1562, 1736, 2501
BshFI	GGCC	2 cut(s)	349, 532
BshNI	GGYRCC	1 cut(s)	792
BshTI	ACCGGT	1 cut(s)	231
BsiHKAI	GWGCWC	2 cut(s)	1060, 2283
BsiSI	CCGG	2 cut(s)	160, 232
BslFI	GGGAC	1 cut(s)	235
BslI	CCNNNNNNNGG	4 cut(s)	92, 122, 845, 1966
BsmAI	GTCTC	3 cut(s)	106, 1120, 1228
BsmBI	CGTCTC	1 cut(s)	1120
BsmFI	GGGAC	1 cut(s)	235
BsmI	GAATGC	3 cut(s)	929, 2411, 2502
BsnI	GGCC	2 cut(s)	349, 532
Bso31I	GGTCTC	2 cut(s)	106, 1228
Bsp119I	TTCGAA	1 cut(s)	1040
Bsp1286I	GDGCHC	2 cut(s)	1060, 2283
Bsp19I	CCATGG	1 cut(s)	513
BspACI	CCGC	3 cut(s)	796, 1337, 1486
BspANI	GGCC	2 cut(s)	349, 532
BspCNI	CTCAG	5 cut(s)	403, 708, 799, 1018, 1200
BspLI	GGNNCC	5 cut(s)	158, 511, 794, 1428, 1440
BspMAI	CTGCAG	2 cut(s)	1762, 2409
BspOI	GCTAGC	1 cut(s)	992
BspPI	GGATC	6 cut(s)	504, 517, 608, 1421, 1434, 2010
BspT104I	TTCGAA	1 cut(s)	1040
BspT107I	GGYRCC	1 cut(s)	792
BspTNI	GGTCTC	2 cut(s)	106, 1228
BsrDI	GCAATG	3 cut(s)	934, 1314, 2379
BsrFI	RCCGGY	1 cut(s)	231
BsrI	ACTGG	5 cut(s)	649, 739, 1127, 1411, 1882
BssAI	RCCGGY	1 cut(s)	231
BssECI	CCNNGG	6 cut(s)	187, 513, 858, 1430, 2274, 2289
BssSI	CACGAG	2 cut(s)	534, 1613
BssT1I	CCWWGG	2 cut(s)	513, 858
Bst2BI	CACGAG	2 cut(s)	534, 1613
Bst2UI	CCWGG	2 cut(s)	2000, 2275
Bst4CI	ACNGT	7 cut(s)	181, 188, 1281, 1356, 1453, 1723, 2626
Bst6I	CTCTTC	3 cut(s)	146, 351, 417
BstAPI	GCANNNNNTGC	1 cut(s)	701
BstBI	TTCGAA	1 cut(s)	1040
BstC8I	GCNNGC	6 cut(s)	569, 990, 1548, 2131, 2239, 2409
BstDEI	CTNAG	8 cut(s)	320, 411, 716, 807, 1026, 1088, 1187, 2652
BstDSI	CCRYGG	2 cut(s)	187, 513
BstH2I	RGCGCY	1 cut(s)	1171
BstHHI	GCGC	1 cut(s)	1170
BstMAI	GTCTC	3 cut(s)	106, 1120, 1228
BstMWI	GCNNNNNNNGC	4 cut(s)	701, 812, 1159, 2243
BstNI	CCWGG	2 cut(s)	2000, 2275
BstNSI	RCATGY	2 cut(s)	1593, 2133
BstSCI	CCNGG	3 cut(s)	159, 1998, 2273
BstSFI	CTRYAG	2 cut(s)	1758, 2405
BstSLI	GKGCMC	2 cut(s)	1060, 2283
BstV1I	GCAGC	6 cut(s)	889, 1257, 1555, 1772, 2169, 2247
BstV2I	GAAGAC	2 cut(s)	406, 1924
BstX2I	RGATCY	3 cut(s)	509, 613, 1426
BstYI	RGATCY	3 cut(s)	509, 613, 1426
BsuRI	GGCC	2 cut(s)	349, 532
BtgI	CCRYGG	2 cut(s)	187, 513
BtsIMutI	CAGTG	4 cut(s)	186, 808, 1449, 1875
Cac8I	GCNNGC	6 cut(s)	569, 990, 1548, 2131, 2239, 2409
CfoI	GCGC	1 cut(s)	1170
Cfr10I	RCCGGY	1 cut(s)	231
Csp6I	GTAC	5 cut(s)	60, 547, 793, 1217, 1600
CspAI	ACCGGT	1 cut(s)	231
CviAII	CATG	8 cut(s)	514, 580, 785, 1573, 1590, 2006, 2130, 2363
CviQI	GTAC	5 cut(s)	60, 547, 793, 1217, 1600
DdeI	CTNAG	8 cut(s)	320, 411, 716, 807, 1026, 1088, 1187, 2652
DraI	TTTAAA	2 cut(s)	432, 2602
DrdI	GACNNNNNNGTC	1 cut(s)	1338
DseDI	GACNNNNNNGTC	1 cut(s)	1338
Eam1104I	CTCTTC	3 cut(s)	146, 351, 417
EarI	CTCTTC	3 cut(s)	146, 351, 417
Eco130I	CCWWGG	2 cut(s)	513, 858
Eco31I	GGTCTC	2 cut(s)	106, 1228
Eco32I	GATATC	1 cut(s)	2101
Eco47III	AGCGCT	1 cut(s)	1169
EcoRI	GAATTC	1 cut(s)	2301
EcoRII	CCWGG	2 cut(s)	1998, 2273
EcoRV	GATATC	1 cut(s)	2101
EcoT14I	CCWWGG	2 cut(s)	513, 858
EcoT22I	ATGCAT	1 cut(s)	2135
ErhI	CCWWGG	2 cut(s)	513, 858
Esp3I	CGTCTC	1 cut(s)	1120
FaeI	CATG	8 cut(s)	517, 583, 788, 1576, 1593, 2009, 2133, 2366
FalI	AAGNNNNNCTT	4 cut(s)	391, 423, 2460, 2492
FaqI	GGGAC	1 cut(s)	235
FatI	CATG	8 cut(s)	513, 579, 784, 1572, 1589, 2005, 2129, 2362
FauI	CCCGC	1 cut(s)	1330
FauNDI	CATATG	2 cut(s)	1561, 1927
FblI	GTMKAC	2 cut(s)	649, 1455
Fnu4HI	GCNGC	6 cut(s)	903, 1271, 1544, 1761, 2183, 2261
Fsp4HI	GCNGC	6 cut(s)	903, 1271, 1544, 1761, 2183, 2261
FspBI	CTAG	6 cut(s)	653, 840, 879, 989, 1862, 2580
GlaI	GCGC	1 cut(s)	1169
GluI	GCNGC	6 cut(s)	903, 1271, 1544, 1761, 2183, 2261
GsuI	CTGGAG	2 cut(s)	1144, 2366
HaeII	RGCGCY	1 cut(s)	1171
HaeIII	GGCC	2 cut(s)	349, 532
HapII	CCGG	2 cut(s)	160, 232
HhaI	GCGC	1 cut(s)	1170
Hin1II	CATG	8 cut(s)	517, 583, 788, 1576, 1593, 2009, 2133, 2366
Hin6I	GCGC	1 cut(s)	1168
HinP1I	GCGC	1 cut(s)	1168
HincII	GTYRAC	1 cut(s)	732
HindII	GTYRAC	1 cut(s)	732
HindIII	AAGCTT	2 cut(s)	317, 1890
HinfI	GANTC	3 cut(s)	443, 978, 2162
HpaII	CCGG	2 cut(s)	160, 232
HphI	GGTGA	3 cut(s)	1591, 2101, 2606
Hpy166II	GTNNAC	7 cut(s)	184, 650, 732, 1058, 1456, 1612, 2281
Hpy188I	TCNGA	8 cut(s)	42, 396, 412, 679, 1101, 1118, 1190, 2223
Hpy8I	GTNNAC	7 cut(s)	184, 650, 732, 1058, 1456, 1612, 2281
Hpy99I	CGWCG	1 cut(s)	283
HpyAV	CCTTC	9 cut(s)	208, 212, 292, 444, 747, 1493, 1797, 2322, 2345
HpyCH4III	ACNGT	7 cut(s)	181, 188, 1281, 1356, 1453, 1723, 2626
HpyF10VI	GCNNNNNNNGC	4 cut(s)	701, 812, 1159, 2243
HpyF3I	CTNAG	8 cut(s)	320, 411, 716, 807, 1026, 1088, 1187, 2652
Hsp92II	CATG	8 cut(s)	517, 583, 788, 1576, 1593, 2009, 2133, 2366
HspAI	GCGC	1 cut(s)	1168
KpnI	GGTACC	1 cut(s)	796
LmnI	GCTCC	5 cut(s)	156, 381, 1502, 1519, 1961
Lsp1109I	GCAGC	6 cut(s)	889, 1257, 1555, 1772, 2169, 2247
LweI	GCATC	8 cut(s)	613, 807, 1038, 1620, 1891, 2142, 2169, 2224
MaeI	CTAG	6 cut(s)	653, 840, 879, 989, 1862, 2580
MaeIII	GTNAC	9 cut(s)	326, 1134, 1340, 1447, 1867, 1969, 2089, 2354, 2594
MfeI	CAATTG	1 cut(s)	237
MflI	RGATCY	3 cut(s)	509, 613, 1426
MhlI	GDGCHC	2 cut(s)	1060, 2283
MlyI	GAGTC	2 cut(s)	452, 2171
MmeI	TCCRAC	3 cut(s)	1416, 2028, 2330
Mph1103I	ATGCAT	1 cut(s)	2135
MroXI	GAANNNNTTC	4 cut(s)	403, 1397, 2438, 2460
MslI	CAYNNNNRTG	2 cut(s)	1577, 2477
MspA1I	CMGCKG	1 cut(s)	1486
MspI	CCGG	2 cut(s)	160, 232
MspR9I	CCNGG	3 cut(s)	161, 2000, 2275
MunI	CAATTG	1 cut(s)	237
Mva1269I	GAATGC	3 cut(s)	929, 2411, 2502
MvaI	CCWGG	2 cut(s)	2000, 2275
MwoI	GCNNNNNNNGC	4 cut(s)	701, 812, 1159, 2243
NciI	CCSGG	1 cut(s)	161
NcoI	CCATGG	1 cut(s)	513
NdeI	CATATG	2 cut(s)	1561, 1927
NheI	GCTAGC	1 cut(s)	988
NlaIII	CATG	8 cut(s)	517, 583, 788, 1576, 1593, 2009, 2133, 2366
NlaIV	GGNNCC	5 cut(s)	158, 511, 794, 1428, 1440
NmuCI	GTSAC	6 cut(s)	1340, 1447, 1867, 1969, 2089, 2594
NsiI	ATGCAT	1 cut(s)	2135
NspI	RCATGY	2 cut(s)	1593, 2133
NspV	TTCGAA	1 cut(s)	1040
OliI	CACNNNNGTG	1 cut(s)	2477
PaeI	GCATGC	1 cut(s)	2133
PctI	GAATGC	3 cut(s)	929, 2411, 2502
PdmI	GAANNNNTTC	4 cut(s)	403, 1397, 2438, 2460
PfeI	GAWTC	1 cut(s)	978
PinAI	ACCGGT	1 cut(s)	231
PkrI	GCNGC	6 cut(s)	904, 1272, 1545, 1762, 2184, 2262
PleI	GAGTC	2 cut(s)	451, 2170
PpsI	GAGTC	2 cut(s)	451, 2170
Psp6I	CCWGG	2 cut(s)	1998, 2273
PspGI	CCWGG	2 cut(s)	1998, 2273
PspN4I	GGNNCC	5 cut(s)	158, 511, 794, 1428, 1440
PsrI	GAACNNNNNNTAC	2 cut(s)	2610, 2642
PstI	CTGCAG	2 cut(s)	1762, 2409
PsuI	RGATCY	3 cut(s)	509, 613, 1426
RsaI	GTAC	5 cut(s)	61, 548, 794, 1218, 1601
RsaNI	GTAC	5 cut(s)	60, 547, 793, 1217, 1600
RseI	CAYNNNNRTG	2 cut(s)	1577, 2477
SatI	GCNGC	6 cut(s)	903, 1271, 1544, 1761, 2183, 2261
SchI	GAGTC	2 cut(s)	452, 2171
ScrFI	CCNGG	3 cut(s)	161, 2000, 2275
SduI	GDGCHC	2 cut(s)	1060, 2283
SfaNI	GCATC	8 cut(s)	613, 807, 1038, 1620, 1891, 2142, 2169, 2224
SfcI	CTRYAG	2 cut(s)	1758, 2405
SfuI	TTCGAA	1 cut(s)	1040
SmiMI	CAYNNNNRTG	2 cut(s)	1577, 2477
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
SpeI	ACTAGT	1 cut(s)	2579
SphI	GCATGC	1 cut(s)	2133
SsiI	CCGC	3 cut(s)	796, 1337, 1486
SspI	AATATT	1 cut(s)	2206
SspMI	CTAG	6 cut(s)	653, 840, 879, 989, 1862, 2580
StyD4I	CCNGG	3 cut(s)	159, 1998, 2273
StyI	CCWWGG	2 cut(s)	513, 858
TaaI	ACNGT	7 cut(s)	181, 188, 1281, 1356, 1453, 1723, 2626
TaqI	TCGA	9 cut(s)	101, 285, 747, 1017, 1040, 1082, 1146, 1212, 1783
TaqII	GACCGA	2 cut(s)	2303, 2313
TatI	WGTACW	2 cut(s)	1216, 1599
TfiI	GAWTC	1 cut(s)	978
TscAI	CASTG	4 cut(s)	186, 808, 1456, 1882
TseFI	GTSAC	6 cut(s)	1340, 1447, 1867, 1969, 2089, 2594
TseI	GCWGC	6 cut(s)	902, 1270, 1543, 1760, 2182, 2260
Tsp45I	GTSAC	6 cut(s)	1340, 1447, 1867, 1969, 2089, 2594
TspDTI	ATGAA	9 cut(s)	435, 510, 570, 600, 614, 909, 936, 2031, 2625
TspRI	CASTG	4 cut(s)	186, 808, 1456, 1882
VneI	GTGCAC	2 cut(s)	1056, 2279
XapI	RAATTY	7 cut(s)	249, 269, 361, 427, 850, 2301, 2434
XceI	RCATGY	2 cut(s)	1593, 2133
XmiI	GTMKAC	2 cut(s)	649, 1455
XmnI	GAANNNNTTC	4 cut(s)	403, 1397, 2438, 2460
XspI	CTAG	6 cut(s)	653, 840, 879, 989, 1862, 2580
Zsp2I	ATGCAT	1 cut(s)	2135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.