Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0011291

Physical Location & Seq

Genomic Coordinates Reverse (-)

81416398 .. 81422477

Gene Structure 6080 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00059430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2706 bp

ATGGAATTGTCAAATGGGCAAGTGGGGTTCTCTAATTTTCAAAGAAATGGGATTTTGGCTACGAATTGTAGCTCAAATCCATTTCCTTTATCTGGGTTTTCGATTTTTGGGATACCCATTTTCGGCATTGGCTTAAGTGAGAAGAATGTGAAGAAGAGCCGGGTTTCTGGTATTAAAACAGTGAACCGTGGAAGTGTTATTAGTGCTTTGGCAAAGGAAGGGACTGATAATCGGTCAGTTGGTAGTGAAATTCTGGAGAAAGATTTTGAATTCAAGCCATCGTTTGATCAATGCTTGAAGGTTATGGGGTCTGTTAAGCTTAGAAGTGACAAAGACAAGAAGAGCCGGCCAAAAGAAGATAGTCCAAAGCATAATATGACGGGTAGGGATGTTTCCAGAAGACAGTTGTCTGAGGCAAATGAAGAGCGTGTAAAATCGGGGGAGTCTGAAAGGCATTTGGATCGAGGGAATGTGTCAAAAGTTGCGAAACTATATGAAAATGCTAATGGAACTGCGGAACAAAGCAAAAGGCTACGAGTTAGAGGATATAAGGATGAATATGATAGCAGGCAGAGTGACATGGATGTAAAGGAAAAGATGAAGATAAGGGGAAATACAAGTGATGGAAAATGGTCGAGATATACTGGTAGACCAGAACAAGAATTGGACTTCAACTCAGGTAAGGGTGCATCGTCACGAAATGCTAAAGAAAGCCCAAGAGATTACAAGTCAACTGGTCAAGACTTTGAGAGAAGGAAAAGTGGTGTTAGAAGTGAAGATGGATTTGAGAGGTACCGCATCAGTGCTGAGAAAGCCACTGATAATAAAGCTTTCTCTCCTAGAAGTGGAAATTCAACCAAGAACGGACGAGATTTCCCTAGGAGAGACTATGATGAAAGAGCTGCATTTAAGAATTTTGATGAATTCAGTGATATTATGGACAAGCCACGAGTTTCACAAATGCAAATGGAGGAGAGAATCCAGAAGCTAGCAAAATCGCTGAATGGTGCAAACATCGACATGCCTGAGTGGATGTTTTCAAAGATGATGCGAAGTGCACAAATCAGATTCACAGATCATTCAATACTTAGAGTTATTCAGATATTAGGAAAATTTGGAAACTGGAGACGAGTGTTACAAGTCATTGAGTGGCTTCAGATGCGTGAGCGCTTCAAATCTCACAAGCTCAGATACATATATACAACTGCTCTCGATGTACTTGGAAAGGCAAGGAGACCTGTGGAGGCACTAAATGTATTTCATGCAATGCTGCAACAACTATCATCATATCCTGACTTGGTAGCTTACCATTCCATTGCCATTACTCTTGGACAAGCGGGCCATATGAAAGAACTGTTTGATGTGATTGATACTATGCGGTCTCCTCCCAAGAAGAAGTTCAAGACTGGAGCACTTGGGAAGTGGGATCCTCGGTTGGAGCCAGATGTCATTGTCTACAATGCAGTACTAAATGCTTGTGTTCAGCGGAAACAATGGGAAGGAGCATTTTGGGTTTTGGAGCAGTTAAAGAAACAAGGTGTGCAGCCTGCCACTACAACATATGGACTTGTCATGGAGAATGATGCAAAGGGTCATTTTCGTACCAGGCCTGCTAGAGTGCTAGGTGATGTTTGCATGTGGCAAGTACAATTTGGTTCACGAGTTTTTAAGAAGATGCAGAAATCTTCTATACCAAATGCTTTAACTTACAGAGTTATTGTGAATACTCTTTGGAGAGAAGATAAAATAGACGAGGCTGTACAGACTGTTTGCAATATGGAAAGACGAGGAATAGTAGGTTCTGCAGCTCTTTACTATGACTTCGCTCGATGTCTTTGTAGTGCTGGAAGGTGTCAAGAAGCACTAATGCAGATTGAGAAGATATGTAAGGTTGCAAATAAGCCTTTAGTAGTGACTTACACTGGTTTAATTCAAGCTTGTTTGGACGCTGGAAGCATTGAAAATGGGGCATATGTCTTCAACCAAATGGAGAACTTCTGTTCCCCAAATCTGGTCACTTGCAACATAATGCTGAAAGGCTACTTGGACCATGGGATGTATGAAGAAGCAAAACAGCTGTTCCAAAAGATGTTGGAAGATGGGTACAATATCAGCAGCAAATCTGGTTATGAGCTGCGGGTGACACCAGATATCTATACATTCAACACTTTGTTAGAAGCATGCATCACAGAGAAAAGGTGGGATGATTTCGAGTCTTTCTACAAAAGGATGCTGCAAAGTGGATATAACTTCAATATTAAACGACATCTTCGGATGATATTGGATGCTTGCAAAGCAGGAAAGGGTGAGCTACTGGATATAACCTGGGTGCACTTGACCGAGGCAGACCGAATTCCACCCCCTGCTCTCATCAAGGAAAGGTTTTGCAAAAAGCTGGAGGAAGATAACTATTCTGTTGCTATATCCTGCATTGCCAGAACGAATCCCGATGATCATCTGCAGGCATTCTCAGAGACAGCGTGGTTGAATTTGTTTAAGGAAAATGCAGAAAGGTTTCAGAAAGACACTCTTCTGCAGTTAGTTCGTGAGGTTAGCATTCTTACTGCCAAAAGTGATGCGGCGAACCCTGTTTTTGAAAACCTTATGACGTGTTGTAGAGAACTTGATAGAACTGGTGTGAGGACAGGTGATTTTAAACCAAATGAAAGTGCATGTACTGTTCAAACTGAACCAGCTTATTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016070 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

901

Amino Acids

102.89

Weight (kDa)

9.17

Isoelectric Point (pI)

41.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	479 - 525	7.7e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	481 - 524	2.5e-08	PPR repeat family
PPR_2	PF13041	669 - 705	1.4e-07	PPR repeat family
PPR	PF01535	672 - 701	1.6e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011291)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30610 AT1G30610
fragaria_vesca	FvH4_3g11350
malus_domestica	MD05G1264100.v1.1 MD10G1242100.v1.1
prunus_persica	Prupe.4G101500_v2.0.a1
pyrus_communis	pycom05g24820
rosa_chinensis	RchiOBHm_Chr5g0018311
rosa_laevigata	RLG00000032350
rosa_multiflora	Rmu_sc0007362.1_g000034 Rmu_sc0011919.1_g000006 Rmu_sc0038151.1_g000001 Rmu_sc0038657.1_g000001
rosa_roxburghii	Rroxscaffold_1G00059430
rosa_rugosa	Rorug05G0041300
rosa_samantha	Rh5AG134400 Rh5BG133200 Rh5CG144900 Rh5DG134600
rosa_wichuraiana	Rw5G011750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	792
AccB1I	GGYRCC	1 cut(s)	792
AccI	GTMKAC	2 cut(s)	649, 1455
AciI	CCGC	7 cut(s)	515, 796, 1337, 1378, 1486, 2137, 2579
AclWI	GGATC	3 cut(s)	468, 1421, 1434
AcoI	YGGCCR	1 cut(s)	347
AcsI	RAATTY	8 cut(s)	249, 269, 850, 913, 923, 1112, 2352, 2488
AcuI	CTGAAG	1 cut(s)	1139
AfaI	GTAC	8 cut(s)	794, 1218, 1467, 1603, 1647, 1761, 2105, 2677
AfeI	AGCGCT	1 cut(s)	1169
AfiI	CCNNNNNNNGG	4 cut(s)	92, 122, 845, 2011
AflII	CTTAAG	1 cut(s)	133
AflIII	ACRYGT	1 cut(s)	2609
AjiI	CACGTC	1 cut(s)	2610
AjnI	CCWGG	2 cut(s)	1604, 2324
AjuI	GAANNNNNNNTTGG	4 cut(s)	1382, 1414, 2027, 2059
AloI	GAACNNNNNNTCC	2 cut(s)	1985, 2017
Alw21I	GWGCWC	3 cut(s)	1060, 1414, 2334
Alw26I	GTCTC	5 cut(s)	879, 1120, 1228, 1386, 2468
Alw44I	GTGCAC	2 cut(s)	1056, 2330
AlwI	GGATC	3 cut(s)	468, 1421, 1434
Aor51HI	AGCGCT	1 cut(s)	1169
AoxI	GGCC	3 cut(s)	347, 1339, 1607
ApaLI	GTGCAC	2 cut(s)	1056, 2330
ApeKI	GCWGC	7 cut(s)	902, 1270, 1543, 1805, 2115, 2134, 2233
ApoI	RAATTY	8 cut(s)	249, 269, 850, 913, 923, 1112, 2352, 2488
Asp700I	GAANNNNTTC	2 cut(s)	1397, 2514
Asp718I	GGTACC	1 cut(s)	792
AspA2I	CCTAGG	1 cut(s)	878
AspLEI	GCGC	1 cut(s)	1170
AspS9I	GGNCC	2 cut(s)	1339, 2047
AsuC2I	CCSGG	1 cut(s)	161
AsuHPI	GGTGA	4 cut(s)	1637, 2152, 2318, 2660
AsuNHI	GCTAGC	1 cut(s)	988
AvaII	GGWCC	1 cut(s)	2047
AvrII	CCTAGG	1 cut(s)	878
BaeGI	GKGCMC	2 cut(s)	1060, 2334
BamHI	GGATCC	1 cut(s)	1426
BanI	GGYRCC	1 cut(s)	792
BauI	CACGAG	2 cut(s)	948, 1659
BbsI	GAAGAC	2 cut(s)	406, 1969
Bbv12I	GWGCWC	3 cut(s)	1060, 1414, 2334
BbvI	GCAGC	7 cut(s)	889, 1257, 1555, 1817, 2121, 2127, 2220
BccI	CCATC	4 cut(s)	286, 617, 773, 2093
BcgI	CGANNNNNNTGC	4 cut(s)	443, 477, 2525, 2559
BciT130I	CCWGG	2 cut(s)	1606, 2326
BciVI	GTATCC	1 cut(s)	105
BclI	TGATCA	2 cut(s)	286, 2452
BcnI	CCSGG	1 cut(s)	161
BcoDI	GTCTC	5 cut(s)	879, 1120, 1228, 1386, 2468
BfaI	CTAG	5 cut(s)	840, 879, 989, 1614, 1622
BfmI	CTRYAG	3 cut(s)	1803, 2459, 2534
BfoI	RGCGCY	1 cut(s)	1171
BfrI	CTTAAG	1 cut(s)	133
BfuI	GTATCC	1 cut(s)	105
BisI	GCNGC	8 cut(s)	903, 1271, 1544, 1806, 2116, 2135, 2234, 2580
BlnI	CCTAGG	1 cut(s)	878
BlsI	GCNGC	8 cut(s)	904, 1272, 1545, 1807, 2117, 2136, 2235, 2581
BmcAI	AGTACT	1 cut(s)	1467
Bme1390I	CCNGG	3 cut(s)	161, 1606, 2326
Bme18I	GGWCC	1 cut(s)	2047
BmgBI	CACGTC	1 cut(s)	2610
BmgT120I	GGNCC	2 cut(s)	1339, 2047
BmiI	GGNNCC	3 cut(s)	794, 1428, 1440
BmrFI	CCNGG	3 cut(s)	161, 1606, 2326
BmtI	GCTAGC	1 cut(s)	992
BoxI	GACNNNNGTC	1 cut(s)	406
BpiI	GAAGAC	2 cut(s)	406, 1969
BpmI	CTGGAG	4 cut(s)	275, 1144, 1428, 2417
BpuMI	CCSGG	1 cut(s)	161
BsaBI	GATNNNNATC	1 cut(s)	2454
BsaI	GGTCTC	2 cut(s)	1228, 1386
BsaJI	CCNNGG	6 cut(s)	187, 878, 1430, 2050, 2325, 2340
Bsc4I	CCNNNNNNNGG	4 cut(s)	92, 122, 845, 2011
Bse118I	RCCGGY	1 cut(s)	345
Bse1I	ACTGG	7 cut(s)	649, 739, 1127, 1411, 1927, 2319, 2638
Bse3DI	GCAATG	3 cut(s)	1272, 1314, 2430
Bse8I	GATNNNNATC	1 cut(s)	2454
BseBI	CCWGG	2 cut(s)	1606, 2326
BseDI	CCNNGG	6 cut(s)	187, 878, 1430, 2050, 2325, 2340
BseGI	GGATG	9 cut(s)	394, 559, 589, 1038, 2061, 2209, 2235, 2280, 2290
BseJI	GATNNNNATC	1 cut(s)	2454
BseLI	CCNNNNNNNGG	4 cut(s)	92, 122, 845, 2011
BseMI	GCAATG	3 cut(s)	1272, 1314, 2430
BseMII	CTCAG	6 cut(s)	402, 690, 798, 1017, 1201, 2484
BseNI	ACTGG	7 cut(s)	649, 739, 1127, 1411, 1927, 2319, 2638
BseRI	GAGGAG	2 cut(s)	986, 1374
BseSI	GKGCMC	2 cut(s)	1060, 2334
BseXI	GCAGC	7 cut(s)	889, 1257, 1555, 1817, 2121, 2127, 2220
BsgI	GTGCAG	1 cut(s)	1562
BshFI	GGCC	3 cut(s)	349, 1341, 1609
BshNI	GGYRCC	1 cut(s)	792
BsiHKAI	GWGCWC	3 cut(s)	1060, 1414, 2334
BsiSI	CCGG	2 cut(s)	160, 346
BslFI	GGGAC	1 cut(s)	235
BslI	CCNNNNNNNGG	4 cut(s)	92, 122, 845, 2011
BsmAI	GTCTC	5 cut(s)	879, 1120, 1228, 1386, 2468
BsmBI	CGTCTC	1 cut(s)	1120
BsmFI	GGGAC	1 cut(s)	235
BsmI	GAATGC	2 cut(s)	2465, 2556
BsnI	GGCC	3 cut(s)	349, 1341, 1609
Bso31I	GGTCTC	2 cut(s)	1228, 1386
Bsp1286I	GDGCHC	3 cut(s)	1060, 1414, 2334
Bsp1407I	TGTACA	1 cut(s)	1759
Bsp143I	GATC	5 cut(s)	286, 460, 1075, 1426, 2452
Bsp19I	CCATGG	1 cut(s)	2050
BspACI	CCGC	7 cut(s)	515, 796, 1337, 1378, 1486, 2137, 2579
BspANI	GGCC	3 cut(s)	349, 1341, 1609
BspCNI	CTCAG	6 cut(s)	403, 689, 799, 1018, 1200, 2483
BspLI	GGNNCC	3 cut(s)	794, 1428, 1440
BspMAI	CTGCAG	3 cut(s)	1807, 2463, 2538
BspOI	GCTAGC	1 cut(s)	992
BspPI	GGATC	3 cut(s)	468, 1421, 1434
BspQI	GCTCTTC	3 cut(s)	149, 335, 417
BspT107I	GGYRCC	1 cut(s)	792
BspTI	CTTAAG	1 cut(s)	133
BspTNI	GGTCTC	2 cut(s)	1228, 1386
BsrDI	GCAATG	3 cut(s)	1272, 1314, 2430
BsrFI	RCCGGY	1 cut(s)	345
BsrGI	TGTACA	1 cut(s)	1759
BsrI	ACTGG	7 cut(s)	649, 739, 1127, 1411, 1927, 2319, 2638
BssAI	RCCGGY	1 cut(s)	345
BssECI	CCNNGG	6 cut(s)	187, 878, 1430, 2050, 2325, 2340
BssMI	GATC	5 cut(s)	286, 460, 1075, 1426, 2452
BssSI	CACGAG	2 cut(s)	948, 1659
BssT1I	CCWWGG	2 cut(s)	878, 2050
Bst2BI	CACGAG	2 cut(s)	948, 1659
Bst2UI	CCWGG	2 cut(s)	1606, 2326
Bst4CI	ACNGT	6 cut(s)	181, 188, 405, 1356, 1768, 2680
Bst6I	CTCTTC	4 cut(s)	149, 335, 417, 2535
BstAFI	CTTAAG	1 cut(s)	133
BstAUI	TGTACA	1 cut(s)	1759
BstC8I	GCNNGC	9 cut(s)	347, 569, 990, 1339, 1548, 1611, 2182, 2290, 2463
BstDEI	CTNAG	8 cut(s)	320, 411, 676, 807, 1026, 1088, 1187, 2470
BstDSI	CCRYGG	2 cut(s)	187, 2050
BstF5I	GGATG	9 cut(s)	394, 559, 589, 1038, 2061, 2209, 2235, 2280, 2290
BstH2I	RGCGCY	1 cut(s)	1171
BstHHI	GCGC	1 cut(s)	1170
BstKTI	GATC	5 cut(s)	289, 463, 1078, 1429, 2455
BstMAI	GTCTC	5 cut(s)	879, 1120, 1228, 1386, 2468
BstMBI	GATC	5 cut(s)	286, 460, 1075, 1426, 2452
BstMWI	GCNNNNNNNGC	3 cut(s)	812, 1159, 2294
BstNI	CCWGG	2 cut(s)	1606, 2326
BstNSI	RCATGY	4 cut(s)	1024, 1639, 2184, 2676
BstPAI	GACNNNNGTC	1 cut(s)	406
BstSCI	CCNGG	3 cut(s)	159, 1604, 2324
BstSFI	CTRYAG	3 cut(s)	1803, 2459, 2534
BstSLI	GKGCMC	2 cut(s)	1060, 2334
BstV1I	GCAGC	7 cut(s)	889, 1257, 1555, 1817, 2121, 2127, 2220
BstV2I	GAAGAC	2 cut(s)	406, 1969
BstX2I	RGATCY	1 cut(s)	1426
BstYI	RGATCY	1 cut(s)	1426
BsuI	GTATCC	1 cut(s)	105
BsuRI	GGCC	3 cut(s)	349, 1341, 1609
BtgI	CCRYGG	2 cut(s)	187, 2050
BtrI	CACGTC	1 cut(s)	2610
BtsCI	GGATG	9 cut(s)	394, 559, 589, 1038, 2061, 2209, 2235, 2280, 2290
BtsIMutI	CAGTG	5 cut(s)	186, 808, 816, 934, 1920
Cac8I	GCNNGC	9 cut(s)	347, 569, 990, 1339, 1548, 1611, 2182, 2290, 2463
CfoI	GCGC	1 cut(s)	1170
Cfr10I	RCCGGY	1 cut(s)	345
Cfr13I	GGNCC	2 cut(s)	1339, 2047
CseI	GACGC	1 cut(s)	1955
Csp6I	GTAC	8 cut(s)	793, 1217, 1466, 1602, 1646, 1760, 2104, 2676
CviAII	CATG	8 cut(s)	580, 1021, 1262, 1573, 1636, 2051, 2181, 2673
CviQI	GTAC	8 cut(s)	793, 1217, 1466, 1602, 1646, 1760, 2104, 2676
DdeI	CTNAG	8 cut(s)	320, 411, 676, 807, 1026, 1088, 1187, 2470
DpnI	GATC	5 cut(s)	288, 462, 1077, 1428, 2454
DpnII	GATC	5 cut(s)	286, 460, 1075, 1426, 2452
DraI	TTTAAA	1 cut(s)	2656
EaeI	YGGCCR	1 cut(s)	347
Eam1104I	CTCTTC	4 cut(s)	149, 335, 417, 2535
EarI	CTCTTC	4 cut(s)	149, 335, 417, 2535
Eco130I	CCWWGG	2 cut(s)	878, 2050
Eco147I	AGGCCT	1 cut(s)	1609
Eco31I	GGTCTC	2 cut(s)	1228, 1386
Eco32I	GATATC	1 cut(s)	2152
Eco47I	GGWCC	1 cut(s)	2047
Eco47III	AGCGCT	1 cut(s)	1169
Eco57I	CTGAAG	1 cut(s)	1139
EcoRI	GAATTC	3 cut(s)	269, 923, 2352
EcoRII	CCWGG	2 cut(s)	1604, 2324
EcoRV	GATATC	1 cut(s)	2152
EcoT14I	CCWWGG	2 cut(s)	878, 2050
EcoT22I	ATGCAT	1 cut(s)	2186
ErhI	CCWWGG	2 cut(s)	878, 2050
Esp3I	CGTCTC	1 cut(s)	1120
FaeI	CATG	8 cut(s)	583, 1024, 1265, 1576, 1639, 2054, 2184, 2676
FalI	AAGNNNNNCTT	2 cut(s)	2514, 2546
FaqI	GGGAC	1 cut(s)	235
FatI	CATG	8 cut(s)	579, 1020, 1261, 1572, 1635, 2050, 2180, 2672
FauI	CCCGC	2 cut(s)	1330, 2130
FauNDI	CATATG	3 cut(s)	1344, 1561, 1972
FbaI	TGATCA	2 cut(s)	286, 2452
FblI	GTMKAC	2 cut(s)	649, 1455
Fnu4HI	GCNGC	8 cut(s)	903, 1271, 1544, 1806, 2116, 2135, 2234, 2580
FokI	GGATG	9 cut(s)	401, 566, 596, 1045, 2068, 2216, 2242, 2287, 2297
Fsp4HI	GCNGC	8 cut(s)	903, 1271, 1544, 1806, 2116, 2135, 2234, 2580
FspBI	CTAG	5 cut(s)	840, 879, 989, 1614, 1622
GlaI	GCGC	1 cut(s)	1169
GluI	GCNGC	8 cut(s)	903, 1271, 1544, 1806, 2116, 2135, 2234, 2580
GsuI	CTGGAG	4 cut(s)	275, 1144, 1428, 2417
HaeII	RGCGCY	1 cut(s)	1171
HaeIII	GGCC	3 cut(s)	349, 1341, 1609
HapII	CCGG	2 cut(s)	160, 346
HgaI	GACGC	1 cut(s)	1955
HhaI	GCGC	1 cut(s)	1170
Hin1II	CATG	8 cut(s)	583, 1024, 1265, 1576, 1639, 2054, 2184, 2676
Hin6I	GCGC	1 cut(s)	1168
HinP1I	GCGC	1 cut(s)	1168
HincII	GTYRAC	1 cut(s)	732
HindII	GTYRAC	1 cut(s)	732
HindIII	AAGCTT	3 cut(s)	317, 828, 1935
HinfI	GANTC	5 cut(s)	443, 978, 1068, 2213, 2443
HpaII	CCGG	2 cut(s)	160, 346
HphI	GGTGA	4 cut(s)	1637, 2152, 2318, 2660
Hpy166II	GTNNAC	7 cut(s)	184, 650, 732, 1058, 1456, 1658, 2332
Hpy188I	TCNGA	9 cut(s)	412, 448, 1067, 1101, 1158, 1190, 2274, 2473, 2520
Hpy8I	GTNNAC	7 cut(s)	184, 650, 732, 1058, 1456, 1658, 2332
HpyAV	CCTTC	5 cut(s)	212, 292, 747, 1493, 1842
HpyCH4III	ACNGT	6 cut(s)	181, 188, 405, 1356, 1768, 2680
HpyCH4IV	ACGT	1 cut(s)	2609
HpyF10VI	GCNNNNNNNGC	3 cut(s)	812, 1159, 2294
HpyF3I	CTNAG	8 cut(s)	320, 411, 676, 807, 1026, 1088, 1187, 2470
HpySE526I	ACGT	1 cut(s)	2609
Hsp92II	CATG	8 cut(s)	583, 1024, 1265, 1576, 1639, 2054, 2184, 2676
HspAI	GCGC	1 cut(s)	1168
KpnI	GGTACC	1 cut(s)	796
KroI	GCCGGC	1 cut(s)	345
KroNI	GCCGGC	1 cut(s)	347
Ksp22I	TGATCA	2 cut(s)	286, 2452
Kzo9I	GATC	5 cut(s)	286, 460, 1075, 1426, 2452
LguI	GCTCTTC	3 cut(s)	149, 335, 417
LmnI	GCTCC	4 cut(s)	1409, 1438, 1502, 1519
Lsp1109I	GCAGC	7 cut(s)	889, 1257, 1555, 1817, 2121, 2127, 2220
MaeI	CTAG	5 cut(s)	840, 879, 989, 1614, 1622
MaeII	ACGT	1 cut(s)	2609
MaeIII	GTNAC	7 cut(s)	326, 575, 693, 1134, 1912, 2014, 2140
MalI	GATC	5 cut(s)	288, 462, 1077, 1428, 2454
MboI	GATC	5 cut(s)	286, 460, 1075, 1426, 2452
MflI	RGATCY	1 cut(s)	1426
MhlI	GDGCHC	3 cut(s)	1060, 1414, 2334
MlyI	GAGTC	2 cut(s)	452, 2222
MmeI	TCCRAC	2 cut(s)	1416, 2073
Mph1103I	ATGCAT	1 cut(s)	2186
MroNI	GCCGGC	1 cut(s)	345
MroXI	GAANNNNTTC	2 cut(s)	1397, 2514
MslI	CAYNNNNRTG	1 cut(s)	1019
MspA1I	CMGCKG	2 cut(s)	1486, 2077
MspCI	CTTAAG	1 cut(s)	133
MspI	CCGG	2 cut(s)	160, 346
MspR9I	CCNGG	3 cut(s)	161, 1606, 2326
Mva1269I	GAATGC	2 cut(s)	2465, 2556
MvaI	CCWGG	2 cut(s)	1606, 2326
MwoI	GCNNNNNNNGC	3 cut(s)	812, 1159, 2294
NaeI	GCCGGC	1 cut(s)	347
NciI	CCSGG	1 cut(s)	161
NcoI	CCATGG	1 cut(s)	2050
NdeI	CATATG	3 cut(s)	1344, 1561, 1972
NdeII	GATC	5 cut(s)	286, 460, 1075, 1426, 2452
NgoMIV	GCCGGC	1 cut(s)	345
NheI	GCTAGC	1 cut(s)	988
NlaIII	CATG	8 cut(s)	583, 1024, 1265, 1576, 1639, 2054, 2184, 2676
NlaIV	GGNNCC	3 cut(s)	794, 1428, 1440
NmuCI	GTSAC	6 cut(s)	326, 575, 693, 1912, 2014, 2140
NsiI	ATGCAT	1 cut(s)	2186
NspI	RCATGY	4 cut(s)	1024, 1639, 2184, 2676
PaeI	GCATGC	1 cut(s)	2184
PceI	AGGCCT	1 cut(s)	1609
PciSI	GCTCTTC	3 cut(s)	149, 335, 417
PctI	GAATGC	2 cut(s)	2465, 2556
PdiI	GCCGGC	1 cut(s)	347
PdmI	GAANNNNTTC	2 cut(s)	1397, 2514
PfeI	GAWTC	3 cut(s)	978, 1068, 2443
PkrI	GCNGC	8 cut(s)	904, 1272, 1545, 1807, 2117, 2136, 2235, 2581
PleI	GAGTC	2 cut(s)	451, 2221
PpsI	GAGTC	2 cut(s)	451, 2221
PshAI	GACNNNNGTC	1 cut(s)	406
Psp6I	CCWGG	2 cut(s)	1604, 2324
PspGI	CCWGG	2 cut(s)	1604, 2324
PspN4I	GGNNCC	3 cut(s)	794, 1428, 1440
PspPI	GGNCC	2 cut(s)	1339, 2047
PstI	CTGCAG	3 cut(s)	1807, 2463, 2538
PsuI	RGATCY	1 cut(s)	1426
PvuII	CAGCTG	1 cut(s)	2077
RsaI	GTAC	8 cut(s)	794, 1218, 1467, 1603, 1647, 1761, 2105, 2677
RsaNI	GTAC	8 cut(s)	793, 1217, 1466, 1602, 1646, 1760, 2104, 2676
RseI	CAYNNNNRTG	1 cut(s)	1019
SapI	GCTCTTC	3 cut(s)	149, 335, 417
SatI	GCNGC	8 cut(s)	903, 1271, 1544, 1806, 2116, 2135, 2234, 2580
Sau3AI	GATC	5 cut(s)	286, 460, 1075, 1426, 2452
Sau96I	GGNCC	2 cut(s)	1339, 2047
ScaI	AGTACT	1 cut(s)	1467
SchI	GAGTC	2 cut(s)	452, 2222
ScrFI	CCNGG	3 cut(s)	161, 1606, 2326
SduI	GDGCHC	3 cut(s)	1060, 1414, 2334
SfcI	CTRYAG	3 cut(s)	1803, 2459, 2534
SinI	GGWCC	1 cut(s)	2047
SmiMI	CAYNNNNRTG	1 cut(s)	1019
SmlI	CTYRAG	1 cut(s)	133
SmoI	CTYRAG	1 cut(s)	133
SphI	GCATGC	1 cut(s)	2184
SseBI	AGGCCT	1 cut(s)	1609
SsiI	CCGC	7 cut(s)	515, 796, 1337, 1378, 1486, 2137, 2579
SspI	AATATT	1 cut(s)	2257
SspMI	CTAG	5 cut(s)	840, 879, 989, 1614, 1622
StuI	AGGCCT	1 cut(s)	1609
StyD4I	CCNGG	3 cut(s)	159, 1604, 2324
StyI	CCWWGG	2 cut(s)	878, 2050
TaaI	ACNGT	6 cut(s)	181, 188, 405, 1356, 1768, 2680
TaiI	ACGT	1 cut(s)	2612
TaqI	TCGA	7 cut(s)	101, 463, 635, 1017, 1212, 1828, 2211
TaqII	GACCGA	3 cut(s)	222, 2354, 2364
TatI	WGTACW	5 cut(s)	1216, 1465, 1645, 1759, 2675
TauI	GCSGC	1 cut(s)	2582
TfiI	GAWTC	3 cut(s)	978, 1068, 2443
TscAI	CASTG	5 cut(s)	186, 808, 823, 934, 1927
TseFI	GTSAC	6 cut(s)	326, 575, 693, 1912, 2014, 2140
TseI	GCWGC	7 cut(s)	902, 1270, 1543, 1805, 2115, 2134, 2233
Tsp45I	GTSAC	6 cut(s)	326, 575, 693, 1912, 2014, 2140
TspGWI	ACGGA	1 cut(s)	879
TspRI	CASTG	5 cut(s)	186, 808, 823, 934, 1927
Vha464I	CTTAAG	1 cut(s)	133
VneI	GTGCAC	2 cut(s)	1056, 2330
VpaK11BI	GGWCC	1 cut(s)	2047
XapI	RAATTY	8 cut(s)	249, 269, 850, 913, 923, 1112, 2352, 2488
XceI	RCATGY	4 cut(s)	1024, 1639, 2184, 2676
XmaJI	CCTAGG	1 cut(s)	878
XmiI	GTMKAC	2 cut(s)	649, 1455
XmnI	GAANNNNTTC	2 cut(s)	1397, 2514
XspI	CTAG	5 cut(s)	840, 879, 989, 1614, 1622
ZrmI	AGTACT	1 cut(s)	1467
Zsp2I	ATGCAT	1 cut(s)	2186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.