Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0038151.1

Orthogroup ID

OG0011291

Physical Location & Seq

Genomic Coordinates Forward (+)

574 .. 3396

Gene Structure 2823 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0038151.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1353 bp

atgtttgcatgtggcaagtacaatttggttcacgagttttttaagaagatgcagaaatcttctataccaaatgctttaacttacagagttattgtgaatactctttggagagaagataaaatagacgaggctgtacagactgttcacaatatggaaagacgaggaatagtaggttctgcagctctttattatgacttcgctcgatgtctttgtagtgctggaaggtgtcaagaagcactaatgcagattgagaagatatgtaaggttgcaaataagcctttagtagtgacttacactggtttaattcaagcttgtttggatgctggaagcattgaaaatggggcatatgtcttcaaccaaatggagaacttctgttccccaaatctggtcacttgcaacataatgctgaaaggctacttggaccatgggatgtatgaagaagcaaaacagctgttccaaaagatgttggaagatgggtacaatatcagcagcaaatctggttatgagctgcgggtgacaccggatatctatacattcaacactttgttagaagcatgcatcacagagaaaaggtgggatgattttgagtctttctacaaaaggatgctgcaaagtggatataacttcaatattaaacgacatcttcggatgatattggatgcttgcaaagcaggaaagggtgagctactggatataacctgggtgcacttgaccgaggcagaccgaattccaccccctgctctcatcaaggaaaggttttgcaaaaagctggaggaagataactattctgttgctatctcctgcattggcagaacgaatcccgatgatctgcaggcattctcaaagacagcatggttgaatttgttcaaggaaaatgcagaaaggtttcagaaagacactcttctgcagttagttcgtgaggttagcattcttactgccaaaagtgatgtgccgaaccctgtatttgaaaaccttatgacttgttgtagagaacttgatagaactggtgtgaggacaggtgactttaaaccaaatgaaagttatccatttgttgtagtggagtttgatatcaaccagaatccaaggataacagtcgaggatcctgcttacactaacattggtatagacgtcaactctgtcaggtctctgatcacggcgccttggaatggaggcatcatggtaggaagagaaaacagtgttgtggttagctataattccagctcaaaaaaactcactgtggagttcactactactaggtctgaaaatggtactgcccgagacatggtgatgagttgtctttcttaccgtgtaaacctgacgcagcacttacctgatttggtcattgctggctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016070 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

450

Amino Acids

51.2

Weight (kDa)

6.16

Isoelectric Point (pI)

38.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011291)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30610 AT1G30610
fragaria_vesca	FvH4_3g11350
malus_domestica	MD05G1264100.v1.1 MD10G1242100.v1.1
prunus_persica	Prupe.4G101500_v2.0.a1
pyrus_communis	pycom05g24820
rosa_chinensis	RchiOBHm_Chr5g0018311
rosa_laevigata	RLG00000032350
rosa_multiflora	Rmu_sc0007362.1_g000034 Rmu_sc0011919.1_g000006 Rmu_sc0038151.1_g000001 Rmu_sc0038657.1_g000001
rosa_roxburghii	Rroxscaffold_1G00059430
rosa_rugosa	Rorug05G0041300
rosa_samantha	Rh5AG134400 Rh5BG133200 Rh5CG144900 Rh5DG134600
rosa_wichuraiana	Rw5G011750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1131
AccB1I	GGYRCC	1 cut(s)	1156
AciI	CCGC	1 cut(s)	511
AclWI	GGATC	2 cut(s)	1094, 1107
AcsI	RAATTY	2 cut(s)	726, 859
AcyI	GRCGYC	2 cut(s)	1128, 1157
AfaI	GTAC	4 cut(s)	20, 135, 479, 1270
AfiI	CCNNNNNNNGG	3 cut(s)	385, 1166, 1282
AgsI	TTSAA	8 cut(s)	308, 335, 355, 538, 628, 859, 868, 968
AjnI	CCWGG	1 cut(s)	698
AjuI	GAANNNNNNNTTGG	2 cut(s)	401, 433
AloI	GAACNNNNNNTCC	2 cut(s)	359, 391
AluBI	AGCT	8 cut(s)	182, 311, 451, 508, 685, 769, 1209, 1221
AluI	AGCT	8 cut(s)	182, 311, 451, 508, 685, 769, 1209, 1221
Alw21I	GWGCWC	1 cut(s)	708
Alw26I	GTCTC	2 cut(s)	1149, 1272
Alw44I	GTGCAC	1 cut(s)	704
AlwI	GGATC	2 cut(s)	1094, 1107
Ama87I	CYCGRG	1 cut(s)	1275
ApaLI	GTGCAC	1 cut(s)	704
ApeKI	GCWGC	5 cut(s)	179, 489, 508, 607, 1321
ApoI	RAATTY	2 cut(s)	726, 859
Asp700I	GAANNNNTTC	2 cut(s)	863, 885
AspLEI	GCGC	1 cut(s)	1159
AspS9I	GGNCC	1 cut(s)	421
AsuHPI	GGTGA	4 cut(s)	526, 692, 1031, 1297
AvaI	CYCGRG	1 cut(s)	1275
AvaII	GGWCC	1 cut(s)	421
BaeGI	GKGCMC	1 cut(s)	708
BamHI	GGATCC	1 cut(s)	1099
BanI	GGYRCC	1 cut(s)	1156
BauI	CACGAG	1 cut(s)	32
BbsI	GAAGAC	1 cut(s)	343
Bbv12I	GWGCWC	1 cut(s)	708
BbvI	GCAGC	5 cut(s)	191, 495, 501, 594, 1333
BccI	CCATC	1 cut(s)	467
BceAI	ACGGC	1 cut(s)	1170
BcgI	CGANNNNNNTGC	4 cut(s)	896, 930, 1085, 1119
BciT130I	CCWGG	1 cut(s)	700
BclI	TGATCA	1 cut(s)	1149
BcoDI	GTCTC	2 cut(s)	1149, 1272
BfaI	CTAG	2 cut(s)	1254, 1351
BfmI	CTRYAG	3 cut(s)	177, 830, 905
BfoI	RGCGCY	1 cut(s)	1160
BisI	GCNGC	5 cut(s)	180, 490, 509, 608, 1322
BlsI	GCNGC	5 cut(s)	181, 491, 510, 609, 1323
Bme1390I	CCNGG	1 cut(s)	700
Bme18I	GGWCC	1 cut(s)	421
BmeT110I	CYCGRG	1 cut(s)	1275
BmgT120I	GGNCC	1 cut(s)	421
BmiI	GGNNCC	2 cut(s)	1101, 1158
BmrFI	CCNGG	1 cut(s)	700
BmsI	GCATC	6 cut(s)	39, 310, 567, 594, 649, 1182
BpiI	GAAGAC	1 cut(s)	343
BpmI	CTGGAG	1 cut(s)	791
BsaHI	GRCGYC	2 cut(s)	1128, 1157
BsaI	GGTCTC	1 cut(s)	1149
BsaJI	CCNNGG	5 cut(s)	424, 699, 714, 1082, 1160
BsaWI	WCCGGW	1 cut(s)	520
Bsc4I	CCNNNNNNNGG	3 cut(s)	385, 1166, 1282
Bse1I	ACTGG	3 cut(s)	301, 693, 1009
Bse3DI	GCAATG	1 cut(s)	1341
BseBI	CCWGG	1 cut(s)	700
BseDI	CCNNGG	5 cut(s)	424, 699, 714, 1082, 1160
BseGI	GGATG	6 cut(s)	325, 435, 583, 609, 654, 664
BseLI	CCNNNNNNNGG	3 cut(s)	385, 1166, 1282
BseMI	GCAATG	1 cut(s)	1341
BseNI	ACTGG	3 cut(s)	301, 693, 1009
BseSI	GKGCMC	1 cut(s)	708
BseXI	GCAGC	5 cut(s)	191, 495, 501, 594, 1333
BshNI	GGYRCC	1 cut(s)	1156
BsiHKAI	GWGCWC	1 cut(s)	708
BsiHKCI	CYCGRG	1 cut(s)	1275
BsiSI	CCGG	1 cut(s)	521
BslI	CCNNNNNNNGG	3 cut(s)	385, 1166, 1282
BsmAI	GTCTC	2 cut(s)	1149, 1272
BsmI	GAATGC	2 cut(s)	836, 927
Bso31I	GGTCTC	1 cut(s)	1149
BsoBI	CYCGRG	1 cut(s)	1275
Bsp1286I	GDGCHC	1 cut(s)	708
Bsp1407I	TGTACA	1 cut(s)	133
Bsp143I	GATC	3 cut(s)	826, 1099, 1149
Bsp19I	CCATGG	1 cut(s)	424
BspACI	CCGC	1 cut(s)	511
BspLI	GGNNCC	2 cut(s)	1101, 1158
BspMAI	CTGCAG	3 cut(s)	181, 834, 909
BspPI	GGATC	2 cut(s)	1094, 1107
BspT107I	GGYRCC	1 cut(s)	1156
BspTNI	GGTCTC	1 cut(s)	1149
BsrDI	GCAATG	1 cut(s)	1341
BsrGI	TGTACA	1 cut(s)	133
BsrI	ACTGG	3 cut(s)	301, 693, 1009
BssECI	CCNNGG	5 cut(s)	424, 699, 714, 1082, 1160
BssMI	GATC	3 cut(s)	826, 1099, 1149
BssNI	GRCGYC	2 cut(s)	1128, 1157
BssSI	CACGAG	1 cut(s)	32
BssT1I	CCWWGG	3 cut(s)	424, 1082, 1160
Bst2BI	CACGAG	1 cut(s)	32
Bst2UI	CCWGG	1 cut(s)	700
Bst4CI	ACNGT	5 cut(s)	142, 1093, 1196, 1237, 1307
Bst6I	CTCTTC	2 cut(s)	906, 1180
BstACI	GRCGYC	2 cut(s)	1128, 1157
BstAUI	TGTACA	1 cut(s)	133
BstC8I	GCNNGC	4 cut(s)	556, 664, 834, 1348
BstDSI	CCRYGG	1 cut(s)	424
BstF5I	GGATG	6 cut(s)	325, 435, 583, 609, 654, 664
BstH2I	RGCGCY	1 cut(s)	1160
BstHHI	GCGC	1 cut(s)	1159
BstKTI	GATC	3 cut(s)	829, 1102, 1152
BstMAI	GTCTC	2 cut(s)	1149, 1272
BstMBI	GATC	3 cut(s)	826, 1099, 1149
BstMWI	GCNNNNNNNGC	1 cut(s)	668
BstNI	CCWGG	1 cut(s)	700
BstNSI	RCATGY	2 cut(s)	12, 558
BstSCI	CCNGG	1 cut(s)	698
BstSFI	CTRYAG	3 cut(s)	177, 830, 905
BstSLI	GKGCMC	1 cut(s)	708
BstV1I	GCAGC	5 cut(s)	191, 495, 501, 594, 1333
BstV2I	GAAGAC	1 cut(s)	343
BstX2I	RGATCY	1 cut(s)	1099
BstYI	RGATCY	1 cut(s)	1099
BtgI	CCRYGG	1 cut(s)	424
BtsCI	GGATG	6 cut(s)	325, 435, 583, 609, 654, 664
BtsIMutI	CAGTG	3 cut(s)	294, 1201, 1233
Cac8I	GCNNGC	4 cut(s)	556, 664, 834, 1348
CfoI	GCGC	1 cut(s)	1159
Cfr13I	GGNCC	1 cut(s)	421
CseI	GACGC	1 cut(s)	1327
Csp6I	GTAC	4 cut(s)	19, 134, 478, 1269
CviAII	CATG	6 cut(s)	9, 425, 555, 852, 1177, 1282
CviQI	GTAC	4 cut(s)	19, 134, 478, 1269
DinI	GGCGCC	1 cut(s)	1158
DpnI	GATC	3 cut(s)	828, 1101, 1151
DpnII	GATC	3 cut(s)	826, 1099, 1149
DraI	TTTAAA	1 cut(s)	1027
Eam1104I	CTCTTC	2 cut(s)	906, 1180
EarI	CTCTTC	2 cut(s)	906, 1180
Eco130I	CCWWGG	3 cut(s)	424, 1082, 1160
Eco31I	GGTCTC	1 cut(s)	1149
Eco32I	GATATC	2 cut(s)	526, 1069
Eco47I	GGWCC	1 cut(s)	421
Eco88I	CYCGRG	1 cut(s)	1275
EcoRI	GAATTC	1 cut(s)	726
EcoRII	CCWGG	1 cut(s)	698
EcoRV	GATATC	2 cut(s)	526, 1069
EcoT14I	CCWWGG	3 cut(s)	424, 1082, 1160
EcoT22I	ATGCAT	1 cut(s)	560
EgeI	GGCGCC	1 cut(s)	1158
EheI	GGCGCC	1 cut(s)	1158
ErhI	CCWWGG	3 cut(s)	424, 1082, 1160
FaeI	CATG	6 cut(s)	12, 428, 558, 855, 1180, 1285
FalI	AAGNNNNNCTT	2 cut(s)	885, 917
FatI	CATG	6 cut(s)	8, 424, 554, 851, 1176, 1281
FauI	CCCGC	1 cut(s)	504
FauNDI	CATATG	1 cut(s)	346
FbaI	TGATCA	1 cut(s)	1149
Fnu4HI	GCNGC	5 cut(s)	180, 490, 509, 608, 1322
FokI	GGATG	6 cut(s)	332, 442, 590, 616, 661, 671
Fsp4HI	GCNGC	5 cut(s)	180, 490, 509, 608, 1322
FspBI	CTAG	2 cut(s)	1254, 1351
GlaI	GCGC	1 cut(s)	1158
GluI	GCNGC	5 cut(s)	180, 490, 509, 608, 1322
GsuI	CTGGAG	1 cut(s)	791
HaeII	RGCGCY	1 cut(s)	1160
HapII	CCGG	1 cut(s)	521
HgaI	GACGC	1 cut(s)	1327
HhaI	GCGC	1 cut(s)	1159
Hin1I	GRCGYC	2 cut(s)	1128, 1157
Hin1II	CATG	6 cut(s)	12, 428, 558, 855, 1180, 1285
Hin6I	GCGC	1 cut(s)	1157
HinP1I	GCGC	1 cut(s)	1157
HincII	GTYRAC	1 cut(s)	1132
HindII	GTYRAC	1 cut(s)	1132
HindIII	AAGCTT	1 cut(s)	309
HinfI	GANTC	3 cut(s)	587, 817, 1078
HpaII	CCGG	1 cut(s)	521
HphI	GGTGA	4 cut(s)	526, 692, 1031, 1297
Hpy166II	GTNNAC	6 cut(s)	31, 145, 706, 1132, 1245, 1312
Hpy188I	TCNGA	4 cut(s)	648, 891, 1149, 1261
Hpy188III	TCNNGA	4 cut(s)	32, 230, 821, 917
Hpy8I	GTNNAC	6 cut(s)	31, 145, 706, 1132, 1245, 1312
HpyAV	CCTTC	1 cut(s)	216
HpyCH4III	ACNGT	5 cut(s)	142, 1093, 1196, 1237, 1307
HpyCH4IV	ACGT	1 cut(s)	1128
HpyF10VI	GCNNNNNNNGC	1 cut(s)	668
HpySE526I	ACGT	1 cut(s)	1128
Hsp92I	GRCGYC	2 cut(s)	1128, 1157
Hsp92II	CATG	6 cut(s)	12, 428, 558, 855, 1180, 1285
HspAI	GCGC	1 cut(s)	1157
KasI	GGCGCC	1 cut(s)	1156
Ksp22I	TGATCA	1 cut(s)	1149
Kzo9I	GATC	3 cut(s)	826, 1099, 1149
Lsp1109I	GCAGC	5 cut(s)	191, 495, 501, 594, 1333
LweI	GCATC	6 cut(s)	39, 310, 567, 594, 649, 1182
MaeI	CTAG	2 cut(s)	1254, 1351
MaeII	ACGT	1 cut(s)	1128
MaeIII	GTNAC	4 cut(s)	286, 388, 514, 1019
MalI	GATC	3 cut(s)	828, 1101, 1151
MboI	GATC	3 cut(s)	826, 1099, 1149
MflI	RGATCY	1 cut(s)	1099
MhlI	GDGCHC	1 cut(s)	708
MluCI	AATT	5 cut(s)	22, 303, 726, 859, 1213
Mly113I	GGCGCC	1 cut(s)	1157
MlyI	GAGTC	1 cut(s)	596
MmeI	TCCRAC	1 cut(s)	447
MnlI	CCTC	8 cut(s)	121, 155, 709, 766, 913, 1005, 1090, 1163
Mph1103I	ATGCAT	1 cut(s)	560
MroXI	GAANNNNTTC	2 cut(s)	863, 885
MseI	TTAA	5 cut(s)	42, 77, 302, 633, 1026
MslI	CAYNNNNRTG	1 cut(s)	1286
MspA1I	CMGCKG	1 cut(s)	451
MspI	CCGG	1 cut(s)	521
MspR9I	CCNGG	1 cut(s)	700
Mva1269I	GAATGC	2 cut(s)	836, 927
MvaI	CCWGG	1 cut(s)	700
MwoI	GCNNNNNNNGC	1 cut(s)	668
NarI	GGCGCC	1 cut(s)	1157
NcoI	CCATGG	1 cut(s)	424
NdeI	CATATG	1 cut(s)	346
NdeII	GATC	3 cut(s)	826, 1099, 1149
NlaIII	CATG	6 cut(s)	12, 428, 558, 855, 1180, 1285
NlaIV	GGNNCC	2 cut(s)	1101, 1158
NmuCI	GTSAC	4 cut(s)	286, 388, 514, 1019
NsiI	ATGCAT	1 cut(s)	560
NspI	RCATGY	2 cut(s)	12, 558
PaeI	GCATGC	1 cut(s)	558
PctI	GAATGC	2 cut(s)	836, 927
PdmI	GAANNNNTTC	2 cut(s)	863, 885
PfeI	GAWTC	2 cut(s)	817, 1078
PkrI	GCNGC	5 cut(s)	181, 491, 510, 609, 1323
PleI	GAGTC	1 cut(s)	595
PluTI	GGCGCC	1 cut(s)	1160
PpsI	GAGTC	1 cut(s)	595
Psp6I	CCWGG	1 cut(s)	698
PspGI	CCWGG	1 cut(s)	698
PspN4I	GGNNCC	2 cut(s)	1101, 1158
PspPI	GGNCC	1 cut(s)	421
PsrI	GAACNNNNNNTAC	2 cut(s)	126, 158
PstI	CTGCAG	3 cut(s)	181, 834, 909
PsuI	RGATCY	1 cut(s)	1099
PvuII	CAGCTG	1 cut(s)	451
RsaI	GTAC	4 cut(s)	20, 135, 479, 1270
RsaNI	GTAC	4 cut(s)	19, 134, 478, 1269
RseI	CAYNNNNRTG	1 cut(s)	1286
SaqAI	TTAA	5 cut(s)	42, 77, 302, 633, 1026
SatI	GCNGC	5 cut(s)	180, 490, 509, 608, 1322
Sau3AI	GATC	3 cut(s)	826, 1099, 1149
Sau96I	GGNCC	1 cut(s)	421
SchI	GAGTC	1 cut(s)	596
ScrFI	CCNGG	1 cut(s)	700
SduI	GDGCHC	1 cut(s)	708
SfaNI	GCATC	6 cut(s)	39, 310, 567, 594, 649, 1182
SfcI	CTRYAG	3 cut(s)	177, 830, 905
SfoI	GGCGCC	1 cut(s)	1158
SinI	GGWCC	1 cut(s)	421
SmiMI	CAYNNNNRTG	1 cut(s)	1286
SphI	GCATGC	1 cut(s)	558
Sse9I	AATT	5 cut(s)	22, 303, 726, 859, 1213
SsiI	CCGC	1 cut(s)	511
SspDI	GGCGCC	1 cut(s)	1156
SspI	AATATT	1 cut(s)	631
SspMI	CTAG	2 cut(s)	1254, 1351
StyD4I	CCNGG	1 cut(s)	698
StyI	CCWWGG	3 cut(s)	424, 1082, 1160
TaaI	ACNGT	5 cut(s)	142, 1093, 1196, 1237, 1307
TaiI	ACGT	1 cut(s)	1131
TaqI	TCGA	2 cut(s)	202, 1095
TaqII	GACCGA	2 cut(s)	728, 738
TasI	AATT	5 cut(s)	22, 303, 726, 859, 1213
TatI	WGTACW	2 cut(s)	18, 133
TfiI	GAWTC	2 cut(s)	817, 1078
Tru1I	TTAA	5 cut(s)	42, 77, 302, 633, 1026
Tru9I	TTAA	5 cut(s)	42, 77, 302, 633, 1026
TscAI	CASTG	3 cut(s)	301, 1201, 1240
TseFI	GTSAC	4 cut(s)	286, 388, 514, 1019
TseI	GCWGC	5 cut(s)	179, 489, 508, 607, 1321
Tsp45I	GTSAC	4 cut(s)	286, 388, 514, 1019
TspDTI	ATGAA	2 cut(s)	450, 1050
TspRI	CASTG	3 cut(s)	301, 1201, 1240
VneI	GTGCAC	1 cut(s)	704
VpaK11BI	GGWCC	1 cut(s)	421
XapI	RAATTY	2 cut(s)	726, 859
XceI	RCATGY	2 cut(s)	12, 558
XmnI	GAANNNNTTC	2 cut(s)	863, 885
XspI	CTAG	2 cut(s)	1254, 1351
ZraI	GACGTC	1 cut(s)	1129
Zsp2I	ATGCAT	1 cut(s)	560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.