Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0038657.1

Orthogroup ID

OG0011291

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1133

Gene Structure 1133 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0038657.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 415 bp

cgtcgtcctcctcgtggaggcaagcgtcagcttgacgtgggtacagtatccatttgttgtagtggagtttgatatcaaccagaatccaaggataacagtcgaggatcctgcttacactaacattggtatagacgtcaactctgtcaggtctctgatcacggcgccttggaatggaggcatcatggtaggaagagaaaacagtgttgtggttagctataattccagctcaaaaaaactcactgtggagttcactactactaggtctgaaaatggtactgcccgagacatggtgatgagttgtctttcttaccgtgtaaacctgacgcagcacttacctgatttggtcattgctggcttgttggcttcaaccggtaaccatcatctcatggtattttacttcaatttctttggttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009893 GO:0010310 GO:0010726 GO:0010941 GO:0010942 GO:0016020 GO:0019222 GO:0031323 GO:0031325 GO:0043207 GO:0044464 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051193 GO:0051194 GO:0051704 GO:0051707 GO:0065007 GO:0071944 GO:0098542 GO:2000377 GO:2000379

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Lectin_legB Pkinase Pkinase_Tyr

Protein Analysis

137

Amino Acids

15.2

Weight (kDa)

5.47

Isoelectric Point (pI)

28.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011291)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30610 AT1G30610
fragaria_vesca	FvH4_3g11350
malus_domestica	MD05G1264100.v1.1 MD10G1242100.v1.1
prunus_persica	Prupe.4G101500_v2.0.a1
pyrus_communis	pycom05g24820
rosa_chinensis	RchiOBHm_Chr5g0018311
rosa_laevigata	RLG00000032350
rosa_multiflora	Rmu_sc0007362.1_g000034 Rmu_sc0011919.1_g000006 Rmu_sc0038151.1_g000001 Rmu_sc0038657.1_g000001
rosa_roxburghii	Rroxscaffold_1G00059430
rosa_rugosa	Rorug05G0041300
rosa_samantha	Rh5AG134400 Rh5BG133200 Rh5CG144900 Rh5DG134600
rosa_wichuraiana	Rw5G011750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	136
AccB1I	GGYRCC	1 cut(s)	161
AclWI	GGATC	2 cut(s)	99, 112
AcyI	GRCGYC	2 cut(s)	133, 162
AfaI	GTAC	2 cut(s)	43, 275
AfiI	CCNNNNNNNGG	4 cut(s)	14, 17, 171, 287
AgeI	ACCGGT	1 cut(s)	369
AgsI	TTSAA	2 cut(s)	367, 401
AjiI	CACGTC	1 cut(s)	37
AluBI	AGCT	3 cut(s)	31, 214, 226
AluI	AGCT	3 cut(s)	31, 214, 226
Alw26I	GTCTC	2 cut(s)	154, 277
AlwI	GGATC	2 cut(s)	99, 112
Ama87I	CYCGRG	1 cut(s)	280
ApeKI	GCWGC	1 cut(s)	326
AsiGI	ACCGGT	1 cut(s)	369
AspLEI	GCGC	1 cut(s)	164
AsuHPI	GGTGA	1 cut(s)	302
AvaI	CYCGRG	1 cut(s)	280
BamHI	GGATCC	1 cut(s)	104
BanI	GGYRCC	1 cut(s)	161
BauI	CACGAG	1 cut(s)	12
BbvI	GCAGC	1 cut(s)	338
BccI	CCATC	1 cut(s)	385
BceAI	ACGGC	1 cut(s)	175
BcgI	CGANNNNNNTGC	2 cut(s)	90, 124
BciVI	GTATCC	1 cut(s)	58
BclI	TGATCA	1 cut(s)	154
BcoDI	GTCTC	2 cut(s)	154, 277
BfaI	CTAG	1 cut(s)	259
BfoI	RGCGCY	1 cut(s)	165
BfuI	GTATCC	1 cut(s)	58
BisI	GCNGC	1 cut(s)	327
BlsI	GCNGC	1 cut(s)	328
BmeT110I	CYCGRG	1 cut(s)	280
BmgBI	CACGTC	1 cut(s)	37
BmiI	GGNNCC	2 cut(s)	106, 163
BmsI	GCATC	1 cut(s)	187
BsaHI	GRCGYC	2 cut(s)	133, 162
BsaI	GGTCTC	1 cut(s)	154
BsaJI	CCNNGG	2 cut(s)	87, 165
BsaWI	WCCGGW	1 cut(s)	369
Bsc4I	CCNNNNNNNGG	4 cut(s)	14, 17, 171, 287
Bse118I	RCCGGY	1 cut(s)	369
Bse3DI	GCAATG	1 cut(s)	346
BseDI	CCNNGG	2 cut(s)	87, 165
BseLI	CCNNNNNNNGG	4 cut(s)	14, 17, 171, 287
BseMI	GCAATG	1 cut(s)	346
BseXI	GCAGC	1 cut(s)	338
BshNI	GGYRCC	1 cut(s)	161
BshTI	ACCGGT	1 cut(s)	369
BsiHKCI	CYCGRG	1 cut(s)	280
BsiSI	CCGG	1 cut(s)	370
BslI	CCNNNNNNNGG	4 cut(s)	14, 17, 171, 287
BsmAI	GTCTC	2 cut(s)	154, 277
Bso31I	GGTCTC	1 cut(s)	154
BsoBI	CYCGRG	1 cut(s)	280
Bsp143I	GATC	2 cut(s)	104, 154
BspLI	GGNNCC	2 cut(s)	106, 163
BspPI	GGATC	2 cut(s)	99, 112
BspT107I	GGYRCC	1 cut(s)	161
BspTNI	GGTCTC	1 cut(s)	154
BsrDI	GCAATG	1 cut(s)	346
BsrFI	RCCGGY	1 cut(s)	369
BssAI	RCCGGY	1 cut(s)	369
BssECI	CCNNGG	2 cut(s)	87, 165
BssMI	GATC	2 cut(s)	104, 154
BssNI	GRCGYC	2 cut(s)	133, 162
BssSI	CACGAG	1 cut(s)	12
BssT1I	CCWWGG	2 cut(s)	87, 165
Bst2BI	CACGAG	1 cut(s)	12
Bst4CI	ACNGT	5 cut(s)	46, 98, 201, 242, 312
Bst6I	CTCTTC	1 cut(s)	185
BstACI	GRCGYC	2 cut(s)	133, 162
BstC8I	GCNNGC	2 cut(s)	23, 353
BstEII	GGTNACC	1 cut(s)	372
BstENI	CCTNNNNNAGG	1 cut(s)	15
BstH2I	RGCGCY	1 cut(s)	165
BstHHI	GCGC	1 cut(s)	164
BstKTI	GATC	2 cut(s)	107, 157
BstMAI	GTCTC	2 cut(s)	154, 277
BstMBI	GATC	2 cut(s)	104, 154
BstPI	GGTNACC	1 cut(s)	372
BstV1I	GCAGC	1 cut(s)	338
BstX2I	RGATCY	1 cut(s)	104
BstYI	RGATCY	1 cut(s)	104
BsuI	GTATCC	1 cut(s)	58
BtrI	CACGTC	1 cut(s)	37
BtsIMutI	CAGTG	2 cut(s)	206, 238
Cac8I	GCNNGC	2 cut(s)	23, 353
CfoI	GCGC	1 cut(s)	164
Cfr10I	RCCGGY	1 cut(s)	369
CseI	GACGC	2 cut(s)	14, 332
Csp6I	GTAC	2 cut(s)	42, 274
CspAI	ACCGGT	1 cut(s)	369
CviAII	CATG	3 cut(s)	182, 287, 386
CviJI	RGCY	5 cut(s)	31, 214, 226, 355, 363
CviKI_1	RGCY	5 cut(s)	31, 214, 226, 355, 363
CviQI	GTAC	2 cut(s)	42, 274
DinI	GGCGCC	1 cut(s)	163
DpnI	GATC	2 cut(s)	106, 156
DpnII	GATC	2 cut(s)	104, 154
Eam1104I	CTCTTC	1 cut(s)	185
EarI	CTCTTC	1 cut(s)	185
Eco130I	CCWWGG	2 cut(s)	87, 165
Eco31I	GGTCTC	1 cut(s)	154
Eco32I	GATATC	1 cut(s)	74
Eco88I	CYCGRG	1 cut(s)	280
Eco91I	GGTNACC	1 cut(s)	372
EcoNI	CCTNNNNNAGG	1 cut(s)	15
EcoO65I	GGTNACC	1 cut(s)	372
EcoRV	GATATC	1 cut(s)	74
EcoT14I	CCWWGG	2 cut(s)	87, 165
EgeI	GGCGCC	1 cut(s)	163
EheI	GGCGCC	1 cut(s)	163
ErhI	CCWWGG	2 cut(s)	87, 165
FaeI	CATG	3 cut(s)	185, 290, 389
FaiI	YATR	5 cut(s)	129, 183, 217, 288, 387
FatI	CATG	3 cut(s)	181, 286, 385
FbaI	TGATCA	1 cut(s)	154
Fnu4HI	GCNGC	1 cut(s)	327
Fsp4HI	GCNGC	1 cut(s)	327
FspBI	CTAG	1 cut(s)	259
GlaI	GCGC	1 cut(s)	163
GluI	GCNGC	1 cut(s)	327
HaeII	RGCGCY	1 cut(s)	165
HapII	CCGG	1 cut(s)	370
HgaI	GACGC	2 cut(s)	14, 332
HhaI	GCGC	1 cut(s)	164
Hin1I	GRCGYC	2 cut(s)	133, 162
Hin1II	CATG	3 cut(s)	185, 290, 389
Hin6I	GCGC	1 cut(s)	162
HinP1I	GCGC	1 cut(s)	162
HincII	GTYRAC	1 cut(s)	137
HindII	GTYRAC	1 cut(s)	137
HinfI	GANTC	1 cut(s)	83
HpaII	CCGG	1 cut(s)	370
HphI	GGTGA	1 cut(s)	302
Hpy166II	GTNNAC	3 cut(s)	137, 250, 317
Hpy188I	TCNGA	2 cut(s)	154, 266
Hpy8I	GTNNAC	3 cut(s)	137, 250, 317
HpyCH4III	ACNGT	5 cut(s)	46, 98, 201, 242, 312
HpyCH4IV	ACGT	2 cut(s)	36, 133
HpySE526I	ACGT	2 cut(s)	36, 133
Hsp92I	GRCGYC	2 cut(s)	133, 162
Hsp92II	CATG	3 cut(s)	185, 290, 389
HspAI	GCGC	1 cut(s)	162
KasI	GGCGCC	1 cut(s)	161
Ksp22I	TGATCA	1 cut(s)	154
Kzo9I	GATC	2 cut(s)	104, 154
LpnPI	CCDG	8 cut(s)	93, 121, 131, 236, 333, 337, 349, 383
Lsp1109I	GCAGC	1 cut(s)	338
LweI	GCATC	1 cut(s)	187
MaeI	CTAG	1 cut(s)	259
MaeII	ACGT	2 cut(s)	36, 133
MaeIII	GTNAC	1 cut(s)	372
MalI	GATC	2 cut(s)	106, 156
MboI	GATC	2 cut(s)	104, 154
MboII	GAAGA	1 cut(s)	202
MflI	RGATCY	1 cut(s)	104
MluCI	AATT	2 cut(s)	218, 401
Mly113I	GGCGCC	1 cut(s)	162
MnlI	CCTC	5 cut(s)	11, 18, 21, 95, 168
MseI	TTAA	1 cut(s)	413
MslI	CAYNNNNRTG	1 cut(s)	291
MspI	CCGG	1 cut(s)	370
NarI	GGCGCC	1 cut(s)	162
NdeII	GATC	2 cut(s)	104, 154
NlaIII	CATG	3 cut(s)	185, 290, 389
NlaIV	GGNNCC	2 cut(s)	106, 163
PcsI	WCGNNNNNNNCGW	1 cut(s)	10
PfeI	GAWTC	1 cut(s)	83
PinAI	ACCGGT	1 cut(s)	369
PkrI	GCNGC	1 cut(s)	328
PluTI	GGCGCC	1 cut(s)	165
PspEI	GGTNACC	1 cut(s)	372
PspN4I	GGNNCC	2 cut(s)	106, 163
PsuI	RGATCY	1 cut(s)	104
RsaI	GTAC	2 cut(s)	43, 275
RsaNI	GTAC	2 cut(s)	42, 274
RseI	CAYNNNNRTG	1 cut(s)	291
SaqAI	TTAA	1 cut(s)	413
SatI	GCNGC	1 cut(s)	327
Sau3AI	GATC	2 cut(s)	104, 154
SetI	ASST	9 cut(s)	33, 39, 136, 150, 216, 228, 264, 322, 338
SfaNI	GCATC	1 cut(s)	187
SfoI	GGCGCC	1 cut(s)	163
SmiMI	CAYNNNNRTG	1 cut(s)	291
Sse9I	AATT	2 cut(s)	218, 401
SspDI	GGCGCC	1 cut(s)	161
SspMI	CTAG	1 cut(s)	259
StyI	CCWWGG	2 cut(s)	87, 165
TaaI	ACNGT	5 cut(s)	46, 98, 201, 242, 312
TaiI	ACGT	2 cut(s)	39, 136
TaqI	TCGA	1 cut(s)	100
TasI	AATT	2 cut(s)	218, 401
TfiI	GAWTC	1 cut(s)	83
Tru1I	TTAA	1 cut(s)	413
Tru9I	TTAA	1 cut(s)	413
TscAI	CASTG	2 cut(s)	206, 245
TseI	GCWGC	1 cut(s)	326
TspRI	CASTG	2 cut(s)	206, 245
XagI	CCTNNNNNAGG	1 cut(s)	15
XspI	CTAG	1 cut(s)	259
ZraI	GACGTC	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.