Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0011291

Physical Location & Seq

Genomic Coordinates Reverse (-)

26316484 .. 26321372

Gene Structure 4889 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g24820.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2751 bp

ATGGAGGTGATGATTATGGCCAACGCTCAACCGGGTGTCTCCAATTTTCAGAGGAATGGGGTTTTTGCTACGAATTGTTGCCCAAAGTCGCTTCCTTTATCTGGGTTTTCGATTTTCCGGAGACCAATTTTCGGTATTGGATTAAATGAGAAGAATGTGAAGAGGAATCGGGTTTTCGGTATTAAGTTCGTGAATACCAGAACTGTTATTAGTGCTGTGTCGAAGGAAGGGTCTGAAATTTTAGAGAAGGAATTCGAATTTAAGCCGTCATTTGATCAGTACTTGAAGGTTATGGGGACTGTTAGGCTTAGAAGTGATAGAGATAAGCAGCAGAGATCGAAAGAAGAGAATCCGAAGCATAGTGTGCGGAGTAGAGGTGTTTCCAGGAGACTGTTGTCTGAGGGTAGTGAAGAGGATGCAAAACTGGGGGAGCCTGAGGGGAATTTGAATCGAGAGAAGGCGTCAAAAGTTGAGAATCGGTATGAGTTGCTTGGAAATAGAAATGGAAGCACGCATGAACGTCAACGAGTTAAGGGATTTAAGGATGAATACGATAGCAGACAGAACAACAAGGATGAAAAGGATAAGAAGATGATAAGGGGAGAGACAAGAGATGGAAGATGGTCAAAATATACTGGTAGGGTAGAACCAGGATTGGACTTCAAAGGTAAAAGTACAACAGTACGAAATGCAAAAGATGGCCCGGGAGTTACTGGTCGGCTAGAAGAGGAAGTAGACTTCAAAGGTAAAAGTACAATGGCACGAAATGCAAGAGATGGCCCGAGAGTTTACAAGTCAAGGGATAAAGCCGTTGAAAGAGGGAAGTTTGGTGTTAGAAATGAAGATGGAGTTGAAAGCAACCACAGCAATGCTGATAAAGCCACTGATAGAGGTTTTGTTCCAAGAAGTGTAACTAAGAGTGGTAGGGATTTCCCTAAAAGATTTAATGAAAAAAACTTGGAGGTGGAAAGAGCAGCATTTCGGAATTTTGATGAATTCGGTGATATTATGGACAAGCCACGAGTTTCACAAATGGAAATGGAGCAGAGAATCCAGAAGCTAGCAAAGTGGCTGAATGGTGCAGACATTGACATGCCTGAGTGGATGTTTTCAAAGATGATGCGAAGTGCACAAATCAGATTCACAGATCATTCAATATTGAGAGTTATCCAGCTATTGGGAAAACTAGGAAACTGGAGACGGGTGCTACAAGTCATTGAGTGGCTTCAAATGCGTGAACGTTTCAAATCCCACAAGCTCAGATACATATACACAACTGCACTTGATGTACTTGGAAACGCAAGGAGGCCTGTGGAAGCACTTAATGTATTTCATGCAATGCTGGAACAAATGTCCTCGTATCCCGACTTGGTAGCTTATCATTCTATTGCTGTAACTCTTGGACAAGCAGGACATATGAGGGAACTTTTTGATGTGATTGATACTATGCGATCTCCTCCTAAGAAGAAGTTCAAAACCGGGGCACTTGGGAAGTGGGATCCTCGACTGGAACCAGATATTGTTGTCTTTCATGCGGTATTAAATGCCTGTGTTCAGCGCAAACAATGGGAAGGAGCATTTTGGGTTTTGCAGCAGTTGAAGCAACAAGGCCTACAGCCTGCCACAACAACATATGGACTTGTTATGGAGGTGATGCTAGCATGTGGCAAGTACAACTTGGTTCATGAGTTTTTCAAGAAAGTGCAGAAATCTTCTATACCAAATGCTTTAACTTACCGAGTTATTGTGAACACTCTTTGGAGAGAAGGTAAAGTAGATGAGGCTGTATCGGTTGTTCACAACATGGAAAGACGAGGAATAGTAGGTTATGCGGCTCTCTATTATGACTTTGCTCGATGTCTTTGTAGTGCTGGAAGGTGCCAGGAAGCACTAATGCAGATTGAGAAGATATGTAAGGTTGCAAGTAAGCCTCTAGTAGTGACTTACACTGGTCTAATTCAAGCTTGTTTGGATGCCGGAAGCGTTGAAAATGCGGCCTATGTTTTCAAACAAATGGAGAACATTTGCTCCCCGAATCTTGTTACTTGCAACATAATGCTGAAATCTTTCTTGGACCACGGAATGTTTGAAAAAGCGATAGATCTGTTCCTGAGGATGTTAGATGATGGGAATAATATCACGAGCAGATCCGATTATAAGGTTCGGATAATACCAGATAGCTACACTTTCAACACCTTGTTAGACGCCTGCGTTGCAGAAAAGAGGTGGGATGATTTCGAGTATGTATACAAAAGGATGTTACACCATGGGTTTCACTTCAATGCTAAACGCCATCTTCGGATGATATTGGACGCTTGCAAAGCTGGAAAGGCGGAGCTGCTGGACATAACCTGGATGCACTTGACTGAGGCAGACCGGATCCCACCTCCTCCCCTCGTGAAGGAACGGTTCTGCACAAAGCTAGAGAAAGATGACTATGCTGCTGCTCTCTCCTGTATTACCACTCAAAATCTTGGTGAGCCACAGGCATTCTCGAAGGCAGCGTGGTTGAAGTTGTTCATGGAAAACGCGGAACGGTTTCAGAAAGACACTTTTGTACGGTTGGTTGACGAGGGTAGCATTCTTGTAAACAGAAGTGATAGGTCGAACCCTGTATATCAAAACCTTATGGCAGCTAGCGGAGAAGTTGATAGAATCCGTTTAACGGGAGCTGCAGTTTCTACACGTGAAACTGTATCTACAACTCAAACGGAACCAGCTATCAATTCAAAGATGTATTTTCCGGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016070 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

917

Amino Acids

104.85

Weight (kDa)

9.4

Isoelectric Point (pI)

37.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011291)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30610 AT1G30610
fragaria_vesca	FvH4_3g11350
malus_domestica	MD05G1264100.v1.1 MD10G1242100.v1.1
prunus_persica	Prupe.4G101500_v2.0.a1
pyrus_communis	pycom05g24820
rosa_chinensis	RchiOBHm_Chr5g0018311
rosa_laevigata	RLG00000032350
rosa_multiflora	Rmu_sc0007362.1_g000034 Rmu_sc0011919.1_g000006 Rmu_sc0038151.1_g000001 Rmu_sc0038657.1_g000001
rosa_roxburghii	Rroxscaffold_1G00059430
rosa_rugosa	Rorug05G0041300
rosa_samantha	Rh5AG134400 Rh5BG133200 Rh5CG144900 Rh5DG134600
rosa_wichuraiana	Rw5G011750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2157
AccB1I	GGYRCC	1 cut(s)	1878
AccB7I	CCANNNNNTGG	1 cut(s)	1177
AccI	GTMKAC	2 cut(s)	735, 2247
AccII	CGCG	1 cut(s)	2531
AccIII	TCCGGA	1 cut(s)	117
AciI	CCGC	7 cut(s)	367, 1535, 1832, 1994, 2333, 2531, 2640
AclI	AACGTT	1 cut(s)	1240
AclWI	GGATC	5 cut(s)	1493, 1506, 2142, 2374, 2387
AcoI	YGGCCR	1 cut(s)	18
AcsI	RAATTY	6 cut(s)	237, 251, 257, 442, 985, 995
AcvI	CACGTG	1 cut(s)	2687
AcyI	GRCGYC	2 cut(s)	461, 2205
AfaI	GTAC	7 cut(s)	281, 676, 684, 754, 1290, 1673, 2559
AfiI	CCNNNNNNNGG	5 cut(s)	101, 131, 1177, 2401, 2665
AflIII	ACRYGT	1 cut(s)	2684
AjnI	CCWGG	4 cut(s)	383, 649, 1881, 2351
AjuI	GAANNNNNNNTTGG	2 cut(s)	2054, 2086
AloI	GAACNNNNNNTCC	2 cut(s)	2012, 2044
Alw21I	GWGCWC	1 cut(s)	1132
Alw26I	GTCTC	5 cut(s)	43, 115, 382, 599, 1192
Alw44I	GTGCAC	1 cut(s)	1128
AlwI	GGATC	5 cut(s)	1493, 1506, 2142, 2374, 2387
Ama87I	CYCGRG	2 cut(s)	703, 781
Aor13HI	TCCGGA	1 cut(s)	117
AoxI	GGCC	7 cut(s)	18, 700, 778, 1307, 1609, 1995, 2745
ApaLI	GTGCAC	1 cut(s)	1128
ApeKI	GCWGC	9 cut(s)	328, 974, 1591, 2338, 2441, 2444, 2501, 2633, 2672
ApoI	RAATTY	6 cut(s)	237, 251, 257, 442, 985, 995
ArsI	GACNNNNNNTTYG	2 cut(s)	215, 247
Asp700I	GAANNNNTTC	5 cut(s)	251, 1469, 2066, 2516, 2538
AspLEI	GCGC	1 cut(s)	1560
AspS9I	GGNCC	3 cut(s)	701, 779, 2074
AsuC2I	CCSGG	4 cut(s)	33, 704, 705, 1480
AsuHPI	GGTGA	4 cut(s)	19, 1013, 1663, 2489
AsuII	TTCGAA	1 cut(s)	255
AsuNHI	GCTAGC	3 cut(s)	1060, 1657, 2636
AvaI	CYCGRG	2 cut(s)	703, 781
AvaII	GGWCC	1 cut(s)	2074
AxyI	CCTNAGG	2 cut(s)	435, 2111
BaeGI	GKGCMC	2 cut(s)	1132, 1486
BalI	TGGCCA	1 cut(s)	20
BamHI	GGATCC	2 cut(s)	1498, 2379
BanI	GGYRCC	1 cut(s)	1878
BauI	CACGAG	3 cut(s)	1020, 2140, 2396
BbrPI	CACGTG	1 cut(s)	2687
Bbv12I	GWGCWC	1 cut(s)	1132
BbvI	GCAGC	9 cut(s)	340, 986, 1603, 2325, 2428, 2431, 2513, 2645, 2659
BccI	CCATC	7 cut(s)	608, 615, 692, 770, 839, 2120, 2301
BceAI	ACGGC	2 cut(s)	250, 794
BciT130I	CCWGG	4 cut(s)	385, 651, 1883, 2353
BciVI	GTATCC	1 cut(s)	1371
BclI	TGATCA	1 cut(s)	274
BcnI	CCSGG	4 cut(s)	33, 704, 705, 1480
BcoDI	GTCTC	5 cut(s)	43, 115, 382, 599, 1192
BfaI	CTAG	7 cut(s)	722, 1061, 1187, 1658, 1934, 2423, 2637
BfmI	CTRYAG	2 cut(s)	1613, 2673
BfuI	GTATCC	1 cut(s)	1371
BglII	AGATCT	1 cut(s)	2101
BmcAI	AGTACT	1 cut(s)	281
Bme1390I	CCNGG	8 cut(s)	33, 385, 651, 704, 705, 1480, 1883, 2353
Bme18I	GGWCC	1 cut(s)	2074
BmeT110I	CYCGRG	2 cut(s)	703, 781
BmgT120I	GGNCC	3 cut(s)	701, 779, 2074
BmiI	GGNNCC	6 cut(s)	432, 1500, 1512, 1880, 2381, 2715
BmrFI	CCNGG	8 cut(s)	33, 385, 651, 704, 705, 1480, 1883, 2353
BmrI	ACTGGG	1 cut(s)	434
BmsI	GCATC	5 cut(s)	406, 1110, 1644, 1963, 2346
BmtI	GCTAGC	3 cut(s)	1064, 1661, 2640
BmuI	ACTGGG	1 cut(s)	434
BoxI	GACNNNNGTC	1 cut(s)	394
BpmI	CTGGAG	1 cut(s)	1216
Bpu14I	TTCGAA	1 cut(s)	255
BpuMI	CCSGG	4 cut(s)	33, 704, 705, 1480
BsaAI	YACGTR	1 cut(s)	2687
BsaHI	GRCGYC	2 cut(s)	461, 2205
BsaI	GGTCTC	1 cut(s)	115
BsaJI	CCNNGG	4 cut(s)	703, 1479, 2077, 2266
BsaWI	WCCGGW	2 cut(s)	117, 2376
BsaXI	ACNNNNNCTCC	8 cut(s)	361, 391, 1753, 1783, 2012, 2042, 2661, 2691
Bsc4I	CCNNNNNNNGG	5 cut(s)	101, 131, 1177, 2401, 2665
Bse1I	ACTGG	6 cut(s)	429, 640, 718, 1199, 1512, 1954
Bse21I	CCTNAGG	2 cut(s)	435, 2111
Bse3DI	GCAATG	2 cut(s)	874, 1344
BseAI	TCCGGA	1 cut(s)	117
BseBI	CCWGG	4 cut(s)	385, 651, 1883, 2353
BseDI	CCNNGG	4 cut(s)	703, 1479, 2077, 2266
BseLI	CCNNNNNNNGG	5 cut(s)	101, 131, 1177, 2401, 2665
BseMI	GCAATG	2 cut(s)	874, 1344
BseMII	CTCAG	6 cut(s)	390, 426, 1089, 1273, 2102, 2358
BseNI	ACTGG	6 cut(s)	429, 640, 718, 1199, 1512, 1954
BseRI	GAGGAG	2 cut(s)	1446, 2379
BseSI	GKGCMC	2 cut(s)	1132, 1486
BseXI	GCAGC	9 cut(s)	340, 986, 1603, 2325, 2428, 2431, 2513, 2645, 2659
BsgI	GTGCAG	4 cut(s)	1101, 1263, 1724, 2398
Bsh1236I	CGCG	1 cut(s)	2531
BshFI	GGCC	7 cut(s)	20, 702, 780, 1309, 1611, 1997, 2747
BshNI	GGYRCC	1 cut(s)	1878
BsiHKAI	GWGCWC	1 cut(s)	1132
BsiHKCI	CYCGRG	2 cut(s)	703, 781
BsiSI	CCGG	7 cut(s)	32, 118, 704, 1479, 1977, 2377, 2744
BslFI	GGGAC	1 cut(s)	310
BslI	CCNNNNNNNGG	5 cut(s)	101, 131, 1177, 2401, 2665
BsmAI	GTCTC	5 cut(s)	43, 115, 382, 599, 1192
BsmBI	CGTCTC	1 cut(s)	1192
BsmFI	GGGAC	1 cut(s)	310
BsmI	GAATGC	2 cut(s)	2489, 2580
BsnI	GGCC	7 cut(s)	20, 702, 780, 1309, 1611, 1997, 2747
Bso31I	GGTCTC	1 cut(s)	115
BsoBI	CYCGRG	2 cut(s)	703, 781
Bsp119I	TTCGAA	1 cut(s)	255
Bsp1286I	GDGCHC	2 cut(s)	1132, 1486
Bsp13I	TCCGGA	1 cut(s)	117
Bsp143I	GATC	8 cut(s)	274, 335, 1147, 1451, 1498, 2101, 2147, 2379
Bsp19I	CCATGG	1 cut(s)	2266
BspACI	CCGC	7 cut(s)	367, 1535, 1832, 1994, 2333, 2531, 2640
BspANI	GGCC	7 cut(s)	20, 702, 780, 1309, 1611, 1997, 2747
BspCNI	CTCAG	6 cut(s)	391, 427, 1090, 1272, 2103, 2359
BspEI	TCCGGA	1 cut(s)	117
BspFNI	CGCG	1 cut(s)	2531
BspHI	TCATGA	1 cut(s)	1684
BspLI	GGNNCC	6 cut(s)	432, 1500, 1512, 1880, 2381, 2715
BspMAI	CTGCAG	1 cut(s)	2677
BspOI	GCTAGC	3 cut(s)	1064, 1661, 2640
BspPI	GGATC	5 cut(s)	1493, 1506, 2142, 2374, 2387
BspT104I	TTCGAA	1 cut(s)	255
BspT107I	GGYRCC	1 cut(s)	1878
BspTNI	GGTCTC	1 cut(s)	115
BsrDI	GCAATG	2 cut(s)	874, 1344
BsrI	ACTGG	6 cut(s)	429, 640, 718, 1199, 1512, 1954
BssECI	CCNNGG	4 cut(s)	703, 1479, 2077, 2266
BssMI	GATC	8 cut(s)	274, 335, 1147, 1451, 1498, 2101, 2147, 2379
BssNAI	GTATAC	1 cut(s)	2248
BssNI	GRCGYC	2 cut(s)	461, 2205
BssSI	CACGAG	3 cut(s)	1020, 2140, 2396
BssT1I	CCWWGG	1 cut(s)	2266
Bst1107I	GTATAC	1 cut(s)	2248
Bst2BI	CACGAG	3 cut(s)	1020, 2140, 2396
Bst2UI	CCWGG	4 cut(s)	385, 651, 1883, 2353
Bst4CI	ACNGT	8 cut(s)	205, 301, 393, 682, 2409, 2538, 2562, 2695
Bst6I	CTCTTC	4 cut(s)	155, 339, 405, 720
BstACI	GRCGYC	2 cut(s)	461, 2205
BstAPI	GCANNNNNTGC	2 cut(s)	364, 767
BstBAI	YACGTR	1 cut(s)	2687
BstBI	TTCGAA	1 cut(s)	255
BstC8I	GCNNGC	7 cut(s)	512, 1062, 1620, 1659, 2209, 2317, 2638
BstDEI	CTNAG	9 cut(s)	308, 399, 435, 915, 1098, 1259, 1461, 2111, 2367
BstDSI	CCRYGG	2 cut(s)	2077, 2266
BstENI	CCTNNNNNAGG	1 cut(s)	2399
BstFNI	CGCG	1 cut(s)	2531
BstHHI	GCGC	1 cut(s)	1560
BstKTI	GATC	8 cut(s)	277, 338, 1150, 1454, 1501, 2104, 2150, 2382
BstMAI	GTCTC	5 cut(s)	43, 115, 382, 599, 1192
BstMBI	GATC	8 cut(s)	274, 335, 1147, 1451, 1498, 2101, 2147, 2379
BstMWI	GCNNNNNNNGC	9 cut(s)	364, 767, 864, 878, 1231, 1600, 2213, 2321, 2330
BstNI	CCWGG	4 cut(s)	385, 651, 1883, 2353
BstNSI	RCATGY	2 cut(s)	1096, 1665
BstPAI	GACNNNNGTC	1 cut(s)	394
BstSCI	CCNGG	8 cut(s)	31, 383, 649, 702, 703, 1478, 1881, 2351
BstSFI	CTRYAG	2 cut(s)	1613, 2673
BstSLI	GKGCMC	2 cut(s)	1132, 1486
BstUI	CGCG	1 cut(s)	2531
BstV1I	GCAGC	9 cut(s)	340, 986, 1603, 2325, 2428, 2431, 2513, 2645, 2659
BstX2I	RGATCY	4 cut(s)	1498, 2101, 2147, 2379
BstYI	RGATCY	4 cut(s)	1498, 2101, 2147, 2379
BstZ17I	GTATAC	1 cut(s)	2248
Bsu36I	CCTNAGG	2 cut(s)	435, 2111
BsuI	GTATCC	1 cut(s)	1371
BsuRI	GGCC	7 cut(s)	20, 702, 780, 1309, 1611, 1997, 2747
BtgI	CCRYGG	2 cut(s)	2077, 2266
BtsIMutI	CAGTG	2 cut(s)	882, 1947
Cac8I	GCNNGC	7 cut(s)	512, 1062, 1620, 1659, 2209, 2317, 2638
CciI	TCATGA	1 cut(s)	1684
CfoI	GCGC	1 cut(s)	1560
Cfr13I	GGNCC	3 cut(s)	701, 779, 2074
Cfr9I	CCCGGG	1 cut(s)	703
CseI	GACGC	3 cut(s)	450, 2213, 2321
Csp6I	GTAC	7 cut(s)	280, 675, 683, 753, 1289, 1672, 2558
CviAII	CATG	9 cut(s)	515, 1093, 1334, 1532, 1662, 1685, 1804, 2267, 2521
CviQI	GTAC	7 cut(s)	280, 675, 683, 753, 1289, 1672, 2558
DdeI	CTNAG	9 cut(s)	308, 399, 435, 915, 1098, 1259, 1461, 2111, 2367
DpnI	GATC	8 cut(s)	276, 337, 1149, 1453, 1500, 2103, 2149, 2381
DpnII	GATC	8 cut(s)	274, 335, 1147, 1451, 1498, 2101, 2147, 2379
EaeI	YGGCCR	1 cut(s)	18
Eam1104I	CTCTTC	4 cut(s)	155, 339, 405, 720
EarI	CTCTTC	4 cut(s)	155, 339, 405, 720
EciI	GGCGGA	1 cut(s)	2348
Eco130I	CCWWGG	1 cut(s)	2266
Eco147I	AGGCCT	2 cut(s)	1309, 1611
Eco31I	GGTCTC	1 cut(s)	115
Eco47I	GGWCC	1 cut(s)	2074
Eco72I	CACGTG	1 cut(s)	2687
Eco81I	CCTNAGG	2 cut(s)	435, 2111
Eco88I	CYCGRG	2 cut(s)	703, 781
EcoNI	CCTNNNNNAGG	1 cut(s)	2399
EcoRI	GAATTC	2 cut(s)	251, 995
EcoRII	CCWGG	4 cut(s)	383, 649, 1881, 2351
EcoT14I	CCWWGG	1 cut(s)	2266
ErhI	CCWWGG	1 cut(s)	2266
Esp3I	CGTCTC	1 cut(s)	1192
FaeI	CATG	9 cut(s)	518, 1096, 1337, 1535, 1665, 1688, 1807, 2270, 2524
FalI	AAGNNNNNCTT	2 cut(s)	1661, 1693
FaqI	GGGAC	1 cut(s)	310
FatI	CATG	9 cut(s)	514, 1092, 1333, 1531, 1661, 1684, 1803, 2266, 2520
FauNDI	CATATG	2 cut(s)	1416, 1633
FbaI	TGATCA	1 cut(s)	274
FblI	GTMKAC	2 cut(s)	735, 2247
FspBI	CTAG	7 cut(s)	722, 1061, 1187, 1658, 1934, 2423, 2637
GlaI	GCGC	1 cut(s)	1559
GsuI	CTGGAG	1 cut(s)	1216
HaeIII	GGCC	7 cut(s)	20, 702, 780, 1309, 1611, 1997, 2747
HapII	CCGG	7 cut(s)	32, 118, 704, 1479, 1977, 2377, 2744
HgaI	GACGC	3 cut(s)	450, 2213, 2321
HhaI	GCGC	1 cut(s)	1560
Hin1I	GRCGYC	2 cut(s)	461, 2205
Hin1II	CATG	9 cut(s)	518, 1096, 1337, 1535, 1665, 1688, 1807, 2270, 2524
Hin6I	GCGC	1 cut(s)	1558
HincII	GTYRAC	2 cut(s)	524, 2569
HindII	GTYRAC	2 cut(s)	524, 2569
HindIII	AAGCTT	1 cut(s)	1962
HinfI	GANTC	8 cut(s)	166, 349, 448, 475, 1050, 1140, 2035, 2655
HpaII	CCGG	7 cut(s)	32, 118, 704, 1479, 1977, 2377, 2744
HphI	GGTGA	4 cut(s)	19, 1013, 1663, 2489
HpyCH4III	ACNGT	8 cut(s)	205, 301, 393, 682, 2409, 2538, 2562, 2695
HpyCH4IV	ACGT	3 cut(s)	520, 1240, 2686
HpyF10VI	GCNNNNNNNGC	9 cut(s)	364, 767, 864, 878, 1231, 1600, 2213, 2321, 2330
HpyF3I	CTNAG	9 cut(s)	308, 399, 435, 915, 1098, 1259, 1461, 2111, 2367
HpySE526I	ACGT	3 cut(s)	520, 1240, 2686
Hsp92I	GRCGYC	2 cut(s)	461, 2205
Hsp92II	CATG	9 cut(s)	518, 1096, 1337, 1535, 1665, 1688, 1807, 2270, 2524
HspAI	GCGC	1 cut(s)	1558
Kpn2I	TCCGGA	1 cut(s)	117
Ksp22I	TGATCA	1 cut(s)	274
Kzo9I	GATC	8 cut(s)	274, 335, 1147, 1451, 1498, 2101, 2147, 2379
LmnI	GCTCC	6 cut(s)	430, 1042, 1574, 2033, 2335, 2669
Lsp1109I	GCAGC	9 cut(s)	340, 986, 1603, 2325, 2428, 2431, 2513, 2645, 2659
LweI	GCATC	5 cut(s)	406, 1110, 1644, 1963, 2346
MaeI	CTAG	7 cut(s)	722, 1061, 1187, 1658, 1934, 2423, 2637
MaeII	ACGT	3 cut(s)	520, 1240, 2686
MaeIII	GTNAC	6 cut(s)	709, 910, 1393, 1939, 2041, 2259
MalI	GATC	8 cut(s)	276, 337, 1149, 1453, 1500, 2103, 2149, 2381
MboI	GATC	8 cut(s)	274, 335, 1147, 1451, 1498, 2101, 2147, 2379
MflI	RGATCY	4 cut(s)	1498, 2101, 2147, 2379
MhlI	GDGCHC	2 cut(s)	1132, 1486
MlsI	TGGCCA	1 cut(s)	20
MluNI	TGGCCA	1 cut(s)	20
Mox20I	TGGCCA	1 cut(s)	20
MroI	TCCGGA	1 cut(s)	117
MroXI	GAANNNNTTC	5 cut(s)	251, 1469, 2066, 2516, 2538
MscI	TGGCCA	1 cut(s)	20
MslI	CAYNNNNRTG	3 cut(s)	867, 1091, 2280
Msp20I	TGGCCA	1 cut(s)	20
MspI	CCGG	7 cut(s)	32, 118, 704, 1479, 1977, 2377, 2744
MspR9I	CCNGG	8 cut(s)	33, 385, 651, 704, 705, 1480, 1883, 2353
Mva1269I	GAATGC	2 cut(s)	2489, 2580
MvaI	CCWGG	4 cut(s)	385, 651, 1883, 2353
MvnI	CGCG	1 cut(s)	2531
MwoI	GCNNNNNNNGC	9 cut(s)	364, 767, 864, 878, 1231, 1600, 2213, 2321, 2330
NciI	CCSGG	4 cut(s)	33, 704, 705, 1480
NcoI	CCATGG	1 cut(s)	2266
NdeI	CATATG	2 cut(s)	1416, 1633
NdeII	GATC	8 cut(s)	274, 335, 1147, 1451, 1498, 2101, 2147, 2379
NheI	GCTAGC	3 cut(s)	1060, 1657, 2636
NlaIII	CATG	9 cut(s)	518, 1096, 1337, 1535, 1665, 1688, 1807, 2270, 2524
NlaIV	GGNNCC	6 cut(s)	432, 1500, 1512, 1880, 2381, 2715
NmuCI	GTSAC	1 cut(s)	1939
NspI	RCATGY	2 cut(s)	1096, 1665
NspV	TTCGAA	1 cut(s)	255
PagI	TCATGA	1 cut(s)	1684
PceI	AGGCCT	2 cut(s)	1309, 1611
PcsI	WCGNNNNNNNCGW	1 cut(s)	2501
PctI	GAATGC	2 cut(s)	2489, 2580
PdmI	GAANNNNTTC	5 cut(s)	251, 1469, 2066, 2516, 2538
PfeI	GAWTC	8 cut(s)	166, 349, 448, 475, 1050, 1140, 2035, 2655
PflMI	CCANNNNNTGG	1 cut(s)	1177
PfoI	TCCNGGA	1 cut(s)	383
PmaCI	CACGTG	1 cut(s)	2687
PmlI	CACGTG	1 cut(s)	2687
Ppu21I	YACGTR	1 cut(s)	2687
PshAI	GACNNNNGTC	1 cut(s)	394
PsiI	TTATAA	1 cut(s)	2157
Psp1406I	AACGTT	1 cut(s)	1240
Psp6I	CCWGG	4 cut(s)	383, 649, 1881, 2351
PspCI	CACGTG	1 cut(s)	2687
PspGI	CCWGG	4 cut(s)	383, 649, 1881, 2351
PspN4I	GGNNCC	6 cut(s)	432, 1500, 1512, 1880, 2381, 2715
PspPI	GGNCC	3 cut(s)	701, 779, 2074
PsrI	GAACNNNNNNTAC	2 cut(s)	1779, 1811
PstI	CTGCAG	1 cut(s)	2677
PsuI	RGATCY	4 cut(s)	1498, 2101, 2147, 2379
RsaI	GTAC	7 cut(s)	281, 676, 684, 754, 1290, 1673, 2559
RsaNI	GTAC	7 cut(s)	280, 675, 683, 753, 1289, 1672, 2558
RseI	CAYNNNNRTG	3 cut(s)	867, 1091, 2280
Sau3AI	GATC	8 cut(s)	274, 335, 1147, 1451, 1498, 2101, 2147, 2379
Sau96I	GGNCC	3 cut(s)	701, 779, 2074
ScaI	AGTACT	1 cut(s)	281
ScrFI	CCNGG	8 cut(s)	33, 385, 651, 704, 705, 1480, 1883, 2353
SduI	GDGCHC	2 cut(s)	1132, 1486
SfaNI	GCATC	5 cut(s)	406, 1110, 1644, 1963, 2346
SfcI	CTRYAG	2 cut(s)	1613, 2673
SfuI	TTCGAA	1 cut(s)	255
SinI	GGWCC	1 cut(s)	2074
SmaI	CCCGGG	1 cut(s)	705
SmiMI	CAYNNNNRTG	3 cut(s)	867, 1091, 2280
SseBI	AGGCCT	2 cut(s)	1309, 1611
SsiI	CCGC	7 cut(s)	367, 1535, 1832, 1994, 2333, 2531, 2640
SspI	AATATT	1 cut(s)	1158
SspMI	CTAG	7 cut(s)	722, 1061, 1187, 1658, 1934, 2423, 2637
StuI	AGGCCT	2 cut(s)	1309, 1611
StyD4I	CCNGG	8 cut(s)	31, 383, 649, 702, 703, 1478, 1881, 2351
StyI	CCWWGG	1 cut(s)	2266
TaaI	ACNGT	8 cut(s)	205, 301, 393, 682, 2409, 2538, 2562, 2695
TaiI	ACGT	3 cut(s)	523, 1243, 2689
TatI	WGTACW	5 cut(s)	279, 674, 752, 1288, 1671
TauI	GCSGC	2 cut(s)	1835, 1997
TfiI	GAWTC	8 cut(s)	166, 349, 448, 475, 1050, 1140, 2035, 2655
TscAI	CASTG	2 cut(s)	889, 1954
TseFI	GTSAC	1 cut(s)	1939
TseI	GCWGC	9 cut(s)	328, 974, 1591, 2338, 2441, 2444, 2501, 2633, 2672
Tsp45I	GTSAC	1 cut(s)	1939
TspGWI	ACGGA	3 cut(s)	2094, 2648, 2726
TspMI	CCCGGG	1 cut(s)	703
TspRI	CASTG	2 cut(s)	889, 1954
Van91I	CCANNNNNTGG	1 cut(s)	1177
VneI	GTGCAC	1 cut(s)	1128
VpaK11BI	GGWCC	1 cut(s)	2074
XagI	CCTNNNNNAGG	1 cut(s)	2399
XapI	RAATTY	6 cut(s)	237, 251, 257, 442, 985, 995
XceI	RCATGY	2 cut(s)	1096, 1665
XmaI	CCCGGG	1 cut(s)	703
XmiI	GTMKAC	2 cut(s)	735, 2247
XmnI	GAANNNNTTC	5 cut(s)	251, 1469, 2066, 2516, 2538
XspI	CTAG	7 cut(s)	722, 1061, 1187, 1658, 1934, 2423, 2637
ZrmI	AGTACT	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.