Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0011291

Physical Location & Seq

Genomic Coordinates Reverse (-)

33702994 .. 33706381

Gene Structure 3388 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1242100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1419 bp

ATGAGGGGAGAGACAAGAGATGGAAGAAGGTCAAAATATACTGGTAGGGTAGAACCGCAATTGGACGTCAAAAGTAAAAGTACAATGGCAAAAAATGCAAAAGGATGGTCTGAGAGTTGCTGGTATGCTAGAAGAAGAAGTAGAAGTACAATGACACAAAATGCAAAAGATGGCCCGAGAGTTTACAAGTCAATGGATAATGCCATTGAAAGAAGCAAATTTGGTGTTAGAAATGAAGATGGAGTTGTGACGAACCACATCAATGCGGAGAAAGCCACTGATAGAGGTCTTGTTCCTAGAAGTGTAACTAAGAGTGGTAGGGATTTCCCTAACAGATTTAATGACAATAGTTTGGAGGTTGAAAGAGCAGCATTTCAGAGTTTTGATGAGTTCGGTGATATTATGGATAAGCCACGAGTTTCACATATGGAAATAGAGCAGAGAATCCAGAAGCTAGCAGAGTGGCTGAATGGTGCAGACATCGACATGCCTGAGTGGATGTTTTCAAAGATGATGCGAAGTGCACAAATCAGATTCACAGATCATTCAATATTGAGAGTTATCCAGCTATTGGGAAAACTAGGAAACTGGAGACGGGTATTACTAGTCATTGAGTGGCTTCAAATGCGTGAACGTTTCAAATCCCACAAGCTCAGATACATATACACAACTGCACTTGATGTACTTGGAAAGGCAAGGAGACCTGTGGAGGAACTTAATATATTTCATGCAATGCTGGAACAAATGTCCTCGTATCCTGACTTGGTAGCTTATCATTCTATTTCTGTAACTCTTGGACAAGCGGGACATAAGAGGGCACTTTTTGATGTGATTGATACTATGAGATCTCCTCCAAAGAAGAAGTTCAAAACAGGAGCAGATCCTCGGCTGGATCTTGTTGTCTTCCATGCAGTATTGAATGCTTGTGTTCAGCGCAAACAATGGGAAGGAGCATTTTGGGTTTTGCAGCAGTTAAAGCAACAAGGCCTACAGCCTGCCGCTACAACTTATGGACTTGTCATGGAGGTATTGATATGGATAATATTGACGGTTGTGAACACTCCTTGGAGAGAAGGTAAAATAGATGAGGCTGTATCGGTTGTTCACAACATGGAAAGACGAGGGATAGTAGGTTATGCGGCTCTCTATTATGACTTTGCTCGATGCCTTTGTAGTGCTGGAAGGTGCCAAGAAGCTCTAATGCAGTATTTATTTTGGTTTGGCACTTCAGCATGCATTACAGTTGGATCGCTTATTCCATCATTCCTTCTCGTTGAAAATGCGGCATATGTTTTCAAACAAATGGAGAACTTTTGCTCCCCAAATCTCGTTACTTGCAACATAATGCTGAAGGCTTACTTGGACCACGGAATGTTTGAAAAAGCGAGAGATCTGTTCCTGAAGCATATCCGATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016070 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

473

Amino Acids

54.45

Weight (kDa)

9.52

Isoelectric Point (pI)

46.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011291)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30610 AT1G30610
fragaria_vesca	FvH4_3g11350
malus_domestica	MD05G1264100.v1.1 MD10G1242100.v1.1
prunus_persica	Prupe.4G101500_v2.0.a1
pyrus_communis	pycom05g24820
rosa_chinensis	RchiOBHm_Chr5g0018311
rosa_laevigata	RLG00000032350
rosa_multiflora	Rmu_sc0007362.1_g000034 Rmu_sc0011919.1_g000006 Rmu_sc0038151.1_g000001 Rmu_sc0038657.1_g000001
rosa_roxburghii	Rroxscaffold_1G00059430
rosa_rugosa	Rorug05G0041300
rosa_samantha	Rh5AG134400 Rh5BG133200 Rh5CG144900 Rh5DG134600
rosa_wichuraiana	Rw5G011750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1417
AatII	GACGTC	1 cut(s)	69
AccB1I	GGYRCC	1 cut(s)	1185
AccB7I	CCANNNNNTGG	1 cut(s)	571
AciI	CCGC	6 cut(s)	56, 266, 803, 999, 1139, 1283
AclI	AACGTT	1 cut(s)	634
AclWI	GGATC	3 cut(s)	875, 900, 1255
AcsI	RAATTY	1 cut(s)	218
AcuI	CTGAAG	2 cut(s)	1212, 1370
AcyI	GRCGYC	1 cut(s)	66
AfaI	GTAC	3 cut(s)	82, 148, 684
AfiI	CCNNNNNNNGG	1 cut(s)	571
AhlI	ACTAGT	1 cut(s)	604
AjuI	GAANNNNNNNTTGG	2 cut(s)	1343, 1375
AloI	GAACNNNNNNTCC	2 cut(s)	1301, 1333
AluBI	AGCT	5 cut(s)	454, 568, 652, 770, 1196
AluI	AGCT	5 cut(s)	454, 568, 652, 770, 1196
Alw21I	GWGCWC	1 cut(s)	526
Alw26I	GTCTC	3 cut(s)	5, 586, 694
Alw44I	GTGCAC	1 cut(s)	522
AlwI	GGATC	3 cut(s)	875, 900, 1255
Ama87I	CYCGRG	1 cut(s)	175
AoxI	GGCC	2 cut(s)	172, 985
ApaLI	GTGCAC	1 cut(s)	522
ApeKI	GCWGC	2 cut(s)	368, 967
ApoI	RAATTY	1 cut(s)	218
ArsI	GACNNNNNNTTYG	2 cut(s)	92, 124
Asp700I	GAANNNNTTC	1 cut(s)	863
AspLEI	GCGC	1 cut(s)	936
AspS9I	GGNCC	2 cut(s)	173, 1363
AsuHPI	GGTGA	1 cut(s)	407
AsuNHI	GCTAGC	1 cut(s)	454
AvaI	CYCGRG	1 cut(s)	175
AvaII	GGWCC	1 cut(s)	1363
BaeGI	GKGCMC	2 cut(s)	526, 820
BanI	GGYRCC	1 cut(s)	1185
BarI	GAAGNNNNNNTAC	2 cut(s)	130, 162
BauI	CACGAG	1 cut(s)	414
BbsI	GAAGAC	1 cut(s)	895
Bbv12I	GWGCWC	1 cut(s)	526
BbvI	GCAGC	2 cut(s)	380, 979
BccI	CCATC	5 cut(s)	14, 99, 164, 233, 1267
BciVI	GTATCC	1 cut(s)	765
BcoDI	GTCTC	3 cut(s)	5, 586, 694
BcuI	ACTAGT	1 cut(s)	604
BfaI	CTAG	5 cut(s)	129, 297, 455, 581, 605
BfmI	CTRYAG	1 cut(s)	989
BfuI	GTATCC	1 cut(s)	765
BglII	AGATCT	2 cut(s)	845, 1390
BisI	GCNGC	5 cut(s)	369, 968, 999, 1140, 1284
BlsI	GCNGC	5 cut(s)	370, 969, 1000, 1141, 1285
Bme18I	GGWCC	1 cut(s)	1363
BmeT110I	CYCGRG	1 cut(s)	175
BmgT120I	GGNCC	2 cut(s)	173, 1363
BmiI	GGNNCC	1 cut(s)	1187
BmsI	GCATC	2 cut(s)	504, 1154
BmtI	GCTAGC	1 cut(s)	458
BpiI	GAAGAC	1 cut(s)	895
BplI	GAGNNNNNCTC	2 cut(s)	835, 867
BpmI	CTGGAG	1 cut(s)	610
BsaHI	GRCGYC	1 cut(s)	66
BsaI	GGTCTC	1 cut(s)	694
BsaJI	CCNNGG	3 cut(s)	884, 1064, 1366
BsaXI	ACNNNNNCTCC	4 cut(s)	1060, 1090, 1301, 1331
Bsc4I	CCNNNNNNNGG	1 cut(s)	571
Bse1I	ACTGG	2 cut(s)	46, 593
Bse3DI	GCAATG	1 cut(s)	738
BseDI	CCNNGG	3 cut(s)	884, 1064, 1366
BseGI	GGATG	2 cut(s)	110, 504
BseLI	CCNNNNNNNGG	1 cut(s)	571
BseMI	GCAATG	1 cut(s)	738
BseMII	CTCAG	3 cut(s)	102, 483, 667
BseNI	ACTGG	2 cut(s)	46, 593
BseRI	GAGGAG	1 cut(s)	840
BseSI	GKGCMC	2 cut(s)	526, 820
BseXI	GCAGC	2 cut(s)	380, 979
BsgI	GTGCAG	2 cut(s)	495, 657
BshFI	GGCC	2 cut(s)	174, 987
BshNI	GGYRCC	1 cut(s)	1185
BsiHKAI	GWGCWC	1 cut(s)	526
BsiHKCI	CYCGRG	1 cut(s)	175
BslFI	GGGAC	1 cut(s)	819
BslI	CCNNNNNNNGG	1 cut(s)	571
BsmAI	GTCTC	3 cut(s)	5, 586, 694
BsmBI	CGTCTC	1 cut(s)	586
BsmFI	GGGAC	1 cut(s)	819
BsmI	GAATGC	1 cut(s)	925
BsnI	GGCC	2 cut(s)	174, 987
Bso31I	GGTCTC	1 cut(s)	694
BsoBI	CYCGRG	1 cut(s)	175
Bsp1286I	GDGCHC	2 cut(s)	526, 820
Bsp143I	GATC	6 cut(s)	541, 845, 880, 892, 1247, 1390
BspACI	CCGC	6 cut(s)	56, 266, 803, 999, 1139, 1283
BspANI	GGCC	2 cut(s)	174, 987
BspCNI	CTCAG	3 cut(s)	103, 484, 666
BspLI	GGNNCC	1 cut(s)	1187
BspOI	GCTAGC	1 cut(s)	458
BspPI	GGATC	3 cut(s)	875, 900, 1255
BspT107I	GGYRCC	1 cut(s)	1185
BspTNI	GGTCTC	1 cut(s)	694
BsrDI	GCAATG	1 cut(s)	738
BsrI	ACTGG	2 cut(s)	46, 593
BssECI	CCNNGG	3 cut(s)	884, 1064, 1366
BssMI	GATC	6 cut(s)	541, 845, 880, 892, 1247, 1390
BssNI	GRCGYC	1 cut(s)	66
BssSI	CACGAG	1 cut(s)	414
BssT1I	CCWWGG	1 cut(s)	1064
Bst2BI	CACGAG	1 cut(s)	414
Bst4CI	ACNGT	2 cut(s)	1051, 1243
BstACI	GRCGYC	1 cut(s)	66
BstAPI	GCANNNNNTGC	1 cut(s)	95
BstC8I	GCNNGC	3 cut(s)	456, 996, 1234
BstDEI	CTNAG	4 cut(s)	111, 309, 492, 653
BstDSI	CCRYGG	1 cut(s)	1366
BstF5I	GGATG	2 cut(s)	110, 504
BstHHI	GCGC	1 cut(s)	936
BstKTI	GATC	6 cut(s)	544, 848, 883, 895, 1250, 1393
BstMAI	GTCTC	3 cut(s)	5, 586, 694
BstMBI	GATC	6 cut(s)	541, 845, 880, 892, 1247, 1390
BstMWI	GCNNNNNNNGC	4 cut(s)	95, 272, 625, 976
BstNSI	RCATGY	2 cut(s)	490, 1236
BstSFI	CTRYAG	1 cut(s)	989
BstSLI	GKGCMC	2 cut(s)	526, 820
BstV1I	GCAGC	2 cut(s)	380, 979
BstV2I	GAAGAC	1 cut(s)	895
BstX2I	RGATCY	4 cut(s)	845, 880, 892, 1390
BstYI	RGATCY	4 cut(s)	845, 880, 892, 1390
BsuI	GTATCC	1 cut(s)	765
BsuRI	GGCC	2 cut(s)	174, 987
BtgI	CCRYGG	1 cut(s)	1366
BtsCI	GGATG	2 cut(s)	110, 504
BtsIMutI	CAGTG	1 cut(s)	276
Cac8I	GCNNGC	3 cut(s)	456, 996, 1234
CfoI	GCGC	1 cut(s)	936
Cfr13I	GGNCC	2 cut(s)	173, 1363
Csp6I	GTAC	3 cut(s)	81, 147, 683
CviAII	CATG	6 cut(s)	487, 728, 908, 1021, 1111, 1233
CviQI	GTAC	3 cut(s)	81, 147, 683
DdeI	CTNAG	4 cut(s)	111, 309, 492, 653
DpnI	GATC	6 cut(s)	543, 847, 882, 894, 1249, 1392
DpnII	GATC	6 cut(s)	541, 845, 880, 892, 1247, 1390
Eco130I	CCWWGG	1 cut(s)	1064
Eco147I	AGGCCT	1 cut(s)	987
Eco31I	GGTCTC	1 cut(s)	694
Eco47I	GGWCC	1 cut(s)	1363
Eco57I	CTGAAG	2 cut(s)	1212, 1370
Eco88I	CYCGRG	1 cut(s)	175
EcoT14I	CCWWGG	1 cut(s)	1064
EcoT22I	ATGCAT	1 cut(s)	1238
ErhI	CCWWGG	1 cut(s)	1064
Esp3I	CGTCTC	1 cut(s)	586
FaeI	CATG	6 cut(s)	490, 731, 911, 1024, 1114, 1236
FalI	AAGNNNNNCTT	2 cut(s)	1343, 1375
FaqI	GGGAC	1 cut(s)	819
FatI	CATG	6 cut(s)	486, 727, 907, 1020, 1110, 1232
FauI	CCCGC	1 cut(s)	796
FauNDI	CATATG	2 cut(s)	426, 1288
Fnu4HI	GCNGC	5 cut(s)	369, 968, 999, 1140, 1284
FokI	GGATG	2 cut(s)	117, 511
Fsp4HI	GCNGC	5 cut(s)	369, 968, 999, 1140, 1284
FspBI	CTAG	5 cut(s)	129, 297, 455, 581, 605
GlaI	GCGC	1 cut(s)	935
GluI	GCNGC	5 cut(s)	369, 968, 999, 1140, 1284
GsuI	CTGGAG	1 cut(s)	610
HaeIII	GGCC	2 cut(s)	174, 987
HhaI	GCGC	1 cut(s)	936
Hin1I	GRCGYC	1 cut(s)	66
Hin1II	CATG	6 cut(s)	490, 731, 911, 1024, 1114, 1236
Hin6I	GCGC	1 cut(s)	934
HinP1I	GCGC	1 cut(s)	934
HinfI	GANTC	2 cut(s)	444, 534
HphI	GGTGA	1 cut(s)	407
Hpy166II	GTNNAC	5 cut(s)	184, 524, 632, 1057, 1105
Hpy188I	TCNGA	5 cut(s)	112, 378, 533, 656, 1412
Hpy188III	TCNNGA	3 cut(s)	448, 758, 1399
Hpy8I	GTNNAC	5 cut(s)	184, 524, 632, 1057, 1105
HpyAV	CCTTC	6 cut(s)	21, 941, 1067, 1176, 1277, 1345
HpyCH4III	ACNGT	2 cut(s)	1051, 1243
HpyCH4IV	ACGT	2 cut(s)	66, 634
HpyF10VI	GCNNNNNNNGC	4 cut(s)	95, 272, 625, 976
HpyF3I	CTNAG	4 cut(s)	111, 309, 492, 653
HpySE526I	ACGT	2 cut(s)	66, 634
Hsp92I	GRCGYC	1 cut(s)	66
Hsp92II	CATG	6 cut(s)	490, 731, 911, 1024, 1114, 1236
HspAI	GCGC	1 cut(s)	934
Kzo9I	GATC	6 cut(s)	541, 845, 880, 892, 1247, 1390
LmnI	GCTCC	3 cut(s)	875, 950, 1322
Lsp1109I	GCAGC	2 cut(s)	380, 979
LweI	GCATC	2 cut(s)	504, 1154
MaeI	CTAG	5 cut(s)	129, 297, 455, 581, 605
MaeII	ACGT	2 cut(s)	66, 634
MaeIII	GTNAC	4 cut(s)	247, 304, 787, 1330
MalI	GATC	6 cut(s)	543, 847, 882, 894, 1249, 1392
MboI	GATC	6 cut(s)	541, 845, 880, 892, 1247, 1390
MboII	GAAGA	6 cut(s)	36, 144, 147, 248, 871, 895
MfeI	CAATTG	1 cut(s)	59
MflI	RGATCY	4 cut(s)	845, 880, 892, 1390
MhlI	GDGCHC	2 cut(s)	526, 820
MluCI	AATT	2 cut(s)	59, 218
MmeI	TCCRAC	1 cut(s)	1225
Mph1103I	ATGCAT	1 cut(s)	1238
MroXI	GAANNNNTTC	1 cut(s)	863
MseI	TTAA	3 cut(s)	339, 717, 974
MslI	CAYNNNNRTG	2 cut(s)	261, 485
MunI	CAATTG	1 cut(s)	59
Mva1269I	GAATGC	1 cut(s)	925
MwoI	GCNNNNNNNGC	4 cut(s)	95, 272, 625, 976
NdeI	CATATG	2 cut(s)	426, 1288
NdeII	GATC	6 cut(s)	541, 845, 880, 892, 1247, 1390
NheI	GCTAGC	1 cut(s)	454
NlaIII	CATG	6 cut(s)	490, 731, 911, 1024, 1114, 1236
NlaIV	GGNNCC	1 cut(s)	1187
NmeAIII	GCCGAG	1 cut(s)	865
NmuCI	GTSAC	1 cut(s)	247
NsiI	ATGCAT	1 cut(s)	1238
NspI	RCATGY	2 cut(s)	490, 1236
PaeI	GCATGC	1 cut(s)	1236
PceI	AGGCCT	1 cut(s)	987
PctI	GAATGC	1 cut(s)	925
PdmI	GAANNNNTTC	1 cut(s)	863
PfeI	GAWTC	2 cut(s)	444, 534
PflMI	CCANNNNNTGG	1 cut(s)	571
PkrI	GCNGC	5 cut(s)	370, 969, 1000, 1141, 1285
PsiI	TTATAA	1 cut(s)	1417
Psp1406I	AACGTT	1 cut(s)	634
PspN4I	GGNNCC	1 cut(s)	1187
PspPI	GGNCC	2 cut(s)	173, 1363
PsrI	GAACNNNNNNTAC	2 cut(s)	1086, 1118
PsuI	RGATCY	4 cut(s)	845, 880, 892, 1390
RsaI	GTAC	3 cut(s)	82, 148, 684
RsaNI	GTAC	3 cut(s)	81, 147, 683
RseI	CAYNNNNRTG	2 cut(s)	261, 485
SaqAI	TTAA	3 cut(s)	339, 717, 974
SatI	GCNGC	5 cut(s)	369, 968, 999, 1140, 1284
Sau3AI	GATC	6 cut(s)	541, 845, 880, 892, 1247, 1390
Sau96I	GGNCC	2 cut(s)	173, 1363
SduI	GDGCHC	2 cut(s)	526, 820
SfaNI	GCATC	2 cut(s)	504, 1154
SfcI	CTRYAG	1 cut(s)	989
SinI	GGWCC	1 cut(s)	1363
SmiMI	CAYNNNNRTG	2 cut(s)	261, 485
SpeI	ACTAGT	1 cut(s)	604
SphI	GCATGC	1 cut(s)	1236
Sse9I	AATT	2 cut(s)	59, 218
SseBI	AGGCCT	1 cut(s)	987
SsiI	CCGC	6 cut(s)	56, 266, 803, 999, 1139, 1283
SspI	AATATT	2 cut(s)	552, 1044
SspMI	CTAG	5 cut(s)	129, 297, 455, 581, 605
StuI	AGGCCT	1 cut(s)	987
StyI	CCWWGG	1 cut(s)	1064
TaaI	ACNGT	2 cut(s)	1051, 1243
TaiI	ACGT	2 cut(s)	69, 637
TaqI	TCGA	2 cut(s)	483, 1162
TasI	AATT	2 cut(s)	59, 218
TatI	WGTACW	3 cut(s)	80, 146, 682
TauI	GCSGC	3 cut(s)	1001, 1142, 1286
TfiI	GAWTC	2 cut(s)	444, 534
Tru1I	TTAA	3 cut(s)	339, 717, 974
Tru9I	TTAA	3 cut(s)	339, 717, 974
TscAI	CASTG	1 cut(s)	283
TseFI	GTSAC	1 cut(s)	247
TseI	GCWGC	2 cut(s)	368, 967
Tsp45I	GTSAC	1 cut(s)	247
TspDTI	ATGAA	2 cut(s)	249, 716
TspGWI	ACGGA	1 cut(s)	1383
TspRI	CASTG	1 cut(s)	283
Van91I	CCANNNNNTGG	1 cut(s)	571
VneI	GTGCAC	1 cut(s)	522
VpaK11BI	GGWCC	1 cut(s)	1363
XapI	RAATTY	1 cut(s)	218
XceI	RCATGY	2 cut(s)	490, 1236
XmnI	GAANNNNTTC	1 cut(s)	863
XspI	CTAG	5 cut(s)	129, 297, 455, 581, 605
ZraI	GACGTC	1 cut(s)	67
Zsp2I	ATGCAT	1 cut(s)	1238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.