Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0011291

Physical Location & Seq

Genomic Coordinates Reverse (-)

39937557 .. 39942769

Gene Structure 5213 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1264100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2751 bp

ATGGAGGTGATGGTTATGGCCAACGCTCAACCGGGTGTCTCCAATTTTCAGAGGAATGGGGTTTTTGCTACGAATTGTTGCCCAAAGTCGCTTCCTTTATCTGGGTTTTCGATTTTCCGGAGACCCATTTTCGGTATTGGATTAAATGAGAAGAATGTGAAGAGGAATCGGGTTTTCGGTATTAAGTTCGTGAATTCCAGAACTGTTATTAGTGCTGTGTCGAAGGAAGGGTCTGAAATTTTAGAGAAGGAATTCGAATTTAAGCCGTCATTTGATCAGTACTTGAAGGTTATGGGGACTGTTAGGCTTAGAAGTGATAGAGATAGGCAGCAGAGATCGAAAGAAGAGAATCCGAAGCATAGTGTGCGGAGTAGAGGTGTTTCCAGGAGACTGTTGTCCGAGGGTAGTGAAGAGGATGCAAAATTGGGGGAGCCTGAAGGGAATTTGAATCGAGAGAAGGCGTCAAAATTTGAGAATCGGTATGAGTCGCTTGGAAATAGAAATGGAAGCACGCATGAAAGTGAACGAGTTGAAGGGTTTAAGGATGAATATGATAGCAGACAGAACAACAAGGATGAAAAGGATAAGAAGATGATAAGGGGAGAGACAAGAGATGGAAGATGGTCAAAATATACTGGTAGGGTAGAACCAGGATTGGACTTCAAAGGTAAAAGTACAACGGTACGAAATGCAAAAGATGGCCCGGGAGTTACTGGTCGGCTAGAGCAGGAAGTAGACTTCAAAGGTAAAAGTACAATGGCACGAAATGCGAGAGATGGCCTGAGAGTTTACAAGTCAAGGGATAAAGCCGTTGAAAGAGGGAAATTTGGTGTTAGAAATGAAGATGGAGTTGAAAGGAACGACAGCAATGCTGATAAAGCGACTGATAGAGGTTTTGTTCCAAGAAGTGTAACTAAGAGTGGTAGGGATTTCCCTAAAAGATTTAACGAAAAAAGCTTGGAGGTGGAAAGAGCAGCATTTCAGAATTTTGATGAATTCGGTGATATTATGGACAAGCCACGAGTTTCACAAATGGAAATGGAGCAGAGAATCCAGAAGCTAGCAAAGTGGCTGAATGGTGCAGACATTGACATGCCTGAGTGGATGTTTTCAAAGATGATGCGAAGTGCACAAATCAGATTCACAGATCATTCAATATTGAGAGTTATCCAGCTATTGGGAAAACTAGGAAACTGGAGACGGGTGCTACAAGTTATTGAGTGGCTTCAAATGCGTGAACGTTTCAAATCCCACAAGCTCAGATACATATACACAACTGCACTTGATGTACTTGGAAAGGCAAGGAGGCCTGTGGAAGCACTTAATGTATTTCATGCAATGTTGGAACAAATGTCCTCGTATCCCGACTTGGTAGCTTATCATTCTATTGCTGTAACTCTTGGACAAGCAGGACATATGAGGGAACTTTTTGATGTGATTGATACTATGCGATCTCCTCCTAAGAAGAAGTTCAAAACCGGGGCACTTGGAAAGTGGGATCCTCGTCTGGAACCAGATATTGTTGTCTTTCATGCGGTATTAAATGCCTGTGTTCAGCGCAAACAATGGGAAGGAGCATTTTGGGTTTTGCAGCAGTTGAAGCAACAAGGCCTACAGCCTGCCACAACAACATATGGACTTGTCATGGAGGTGATGCTAGCATGTGGCAAGTACAACTTGGTTCATGAGTTTTTCAAGAAAGTGCAGAAATCTTCTATACCAAATGCTTTAACTTACCGAGTTATTGTGAACACTCTTTGGAGAGAAGGTAAAATAGATGAGGCTGTATCGGTTGTTCACAACATGGAAAGACGAGGAATAGTAGGTTATGCGGCTCTCTATTATGACTTTGCTCGATGTCTTTGTAGTGCTGGAAGGTGCCAAGAAGCACTAATGCAGATTGAGAAGATATGTAAGGTTGCAAACAAGCCTCTAGTAGTGACTTATACCGGTTTAATTCAAGCTTGTTTGGACACTGGAAGCGTTGAAAATGCGGCCTATGTTTTCAAACAAATGGAGAACTTTTGCTCCCCAAATCTTGTTACTTGCAACATAATGCTGAAAGCTTACTTGGACCACAGAATGTTTGAAAAAGCGAAAGATCTGTTCCTGAGGATGTTAGATGATGGGAATAATATCACCAATGGATCCGATTATAAGGTTCGGATAATACCAGATAGCTACACTTTCAACACCTTGTTAGATGCCTGCGTCACAGAAAAGAGGTGGGATGATTTCGAGTATGTTTACAGAAGGATGTTACACCATGGGTTTCACTTCAATGCTAAACGCCATCTTCGGATGATATTGGACGCTTGCAAAGCCGGAAGGGCGGAGCTGCTGGACATGACCTGGATGCACTTGACTGAGGCAGACCGGATTCCACCACCTCCTCTCGTGAAGGAACGGTTCTGCACGAAGCTAGAGAAAGATGACTATGCTGCTGCTCTCTCCTGTATTACCACTCAAAATCTCGGTGAGCTGCAGGCATTCTCGAAGACAGCGTGGTTGAAGTTGTTCAAGGAAAACGCGGAAAGGTTTCAGAATGACACTTTTGTACGGTTAGTTGACGAGGGTAGCATTCTTGTTAACAGAAGTGATAGGTCGAATCCTGTATTTCAAAACCTTATGGCAGCTTGCGGAGAAGTTGATAGAATCCGTTTAGCAGGAGCTGCAGGTTCTACACGTGAAACTGTATCTACAACTCAAACGGAACCAGCTATCAATTCAAAGATGTATTTTCCGGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016070 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

917

Amino Acids

105.03

Weight (kDa)

9.34

Isoelectric Point (pI)

37.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	645 - 690	3.1e-07	Pentatricopeptide repeat domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011291)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30610 AT1G30610
fragaria_vesca	FvH4_3g11350
malus_domestica	MD05G1264100.v1.1 MD10G1242100.v1.1
prunus_persica	Prupe.4G101500_v2.0.a1
pyrus_communis	pycom05g24820
rosa_chinensis	RchiOBHm_Chr5g0018311
rosa_laevigata	RLG00000032350
rosa_multiflora	Rmu_sc0007362.1_g000034 Rmu_sc0011919.1_g000006 Rmu_sc0038151.1_g000001 Rmu_sc0038657.1_g000001
rosa_roxburghii	Rroxscaffold_1G00059430
rosa_rugosa	Rorug05G0041300
rosa_samantha	Rh5AG134400 Rh5BG133200 Rh5CG144900 Rh5DG134600
rosa_wichuraiana	Rw5G011750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2157
Acc36I	ACCTGC	1 cut(s)	2666
AccB1I	GGYRCC	1 cut(s)	1878
AccB7I	CCANNNNNTGG	1 cut(s)	1177
AccI	GTMKAC	1 cut(s)	735
AccII	CGCG	1 cut(s)	2531
AccIII	TCCGGA	1 cut(s)	117
AciI	CCGC	7 cut(s)	367, 1535, 1832, 1994, 2333, 2531, 2640
AclI	AACGTT	1 cut(s)	1240
AclWI	GGATC	4 cut(s)	1493, 1506, 2142, 2155
AcoI	YGGCCR	1 cut(s)	18
AcsI	RAATTY	9 cut(s)	193, 237, 251, 257, 442, 467, 824, 985, 995
AcuI	CTGAAG	1 cut(s)	456
AcvI	CACGTG	1 cut(s)	2687
AcyI	GRCGYC	1 cut(s)	461
AfaI	GTAC	7 cut(s)	281, 676, 684, 754, 1290, 1673, 2559
AfiI	CCNNNNNNNGG	3 cut(s)	101, 131, 1177
AflIII	ACRYGT	1 cut(s)	2684
AgeI	ACCGGT	1 cut(s)	1949
AjnI	CCWGG	3 cut(s)	383, 649, 2351
AjuI	GAANNNNNNNTTGG	2 cut(s)	2054, 2086
AloI	GAACNNNNNNTCC	2 cut(s)	2012, 2044
Alw21I	GWGCWC	1 cut(s)	1132
Alw26I	GTCTC	5 cut(s)	43, 115, 382, 599, 1192
Alw44I	GTGCAC	1 cut(s)	1128
AlwI	GGATC	4 cut(s)	1493, 1506, 2142, 2155
AlwNI	CAGNNNCTG	1 cut(s)	2672
Ama87I	CYCGRG	1 cut(s)	703
Aor13HI	TCCGGA	1 cut(s)	117
AoxI	GGCC	7 cut(s)	18, 700, 778, 1307, 1609, 1995, 2745
ApaLI	GTGCAC	1 cut(s)	1128
ApeKI	GCWGC	9 cut(s)	328, 974, 1591, 2338, 2441, 2444, 2482, 2633, 2672
ApoI	RAATTY	9 cut(s)	193, 237, 251, 257, 442, 467, 824, 985, 995
ArsI	GACNNNNNNTTYG	2 cut(s)	215, 247
AsiGI	ACCGGT	1 cut(s)	1949
Asp700I	GAANNNNTTC	4 cut(s)	251, 1469, 2516, 2538
AspLEI	GCGC	1 cut(s)	1560
AspS9I	GGNCC	2 cut(s)	701, 2074
AsuC2I	CCSGG	4 cut(s)	33, 704, 705, 1480
AsuHPI	GGTGA	5 cut(s)	19, 1013, 1663, 2131, 2489
AsuII	TTCGAA	1 cut(s)	255
AsuNHI	GCTAGC	2 cut(s)	1060, 1657
AvaI	CYCGRG	1 cut(s)	703
AvaII	GGWCC	1 cut(s)	2074
AxyI	CCTNAGG	1 cut(s)	2111
BaeGI	GKGCMC	2 cut(s)	1132, 1486
BalI	TGGCCA	1 cut(s)	20
BamHI	GGATCC	2 cut(s)	1498, 2147
BanI	GGYRCC	1 cut(s)	1878
BauI	CACGAG	2 cut(s)	1020, 2396
BbrPI	CACGTG	1 cut(s)	2687
BbsI	GAAGAC	1 cut(s)	2504
Bbv12I	GWGCWC	1 cut(s)	1132
BbvI	GCAGC	9 cut(s)	340, 986, 1603, 2325, 2428, 2431, 2469, 2645, 2659
BccI	CCATC	8 cut(s)	4, 608, 615, 692, 770, 839, 2120, 2301
BceAI	ACGGC	2 cut(s)	250, 794
BcgI	CGANNNNNNTGC	2 cut(s)	851, 885
BciT130I	CCWGG	3 cut(s)	385, 651, 2353
BciVI	GTATCC	1 cut(s)	1371
BclI	TGATCA	1 cut(s)	274
BcnI	CCSGG	4 cut(s)	33, 704, 705, 1480
BcoDI	GTCTC	5 cut(s)	43, 115, 382, 599, 1192
BfaI	CTAG	6 cut(s)	722, 1061, 1187, 1658, 1934, 2423
BfmI	CTRYAG	3 cut(s)	1613, 2483, 2673
BfuAI	ACCTGC	1 cut(s)	2666
BfuI	GTATCC	1 cut(s)	1371
BglI	GCCNNNNNGGC	1 cut(s)	2330
BglII	AGATCT	1 cut(s)	2101
BmcAI	AGTACT	1 cut(s)	281
Bme1390I	CCNGG	7 cut(s)	33, 385, 651, 704, 705, 1480, 2353
Bme18I	GGWCC	1 cut(s)	2074
BmeT110I	CYCGRG	1 cut(s)	703
BmgT120I	GGNCC	2 cut(s)	701, 2074
BmiI	GGNNCC	6 cut(s)	432, 1500, 1512, 1880, 2149, 2715
BmrFI	CCNGG	7 cut(s)	33, 385, 651, 704, 705, 1480, 2353
BmsI	GCATC	5 cut(s)	406, 1110, 1644, 2194, 2346
BmtI	GCTAGC	2 cut(s)	1064, 1661
BoxI	GACNNNNGTC	1 cut(s)	394
BpiI	GAAGAC	1 cut(s)	2504
BpmI	CTGGAG	1 cut(s)	1216
Bpu14I	TTCGAA	1 cut(s)	255
BpuMI	CCSGG	4 cut(s)	33, 704, 705, 1480
BsaAI	YACGTR	1 cut(s)	2687
BsaHI	GRCGYC	1 cut(s)	461
BsaI	GGTCTC	1 cut(s)	115
BsaJI	CCNNGG	4 cut(s)	399, 703, 1479, 2266
BsaWI	WCCGGW	3 cut(s)	117, 1949, 2376
BsaXI	ACNNNNNCTCC	6 cut(s)	361, 391, 1753, 1783, 2012, 2042
Bsc4I	CCNNNNNNNGG	3 cut(s)	101, 131, 1177
Bse118I	RCCGGY	1 cut(s)	1949
Bse1I	ACTGG	4 cut(s)	640, 718, 1199, 1981
Bse21I	CCTNAGG	1 cut(s)	2111
Bse3DI	GCAATG	2 cut(s)	874, 1344
BseAI	TCCGGA	1 cut(s)	117
BseBI	CCWGG	3 cut(s)	385, 651, 2353
BseDI	CCNNGG	4 cut(s)	399, 703, 1479, 2266
BseGI	GGATG	9 cut(s)	421, 550, 580, 1110, 2121, 2236, 2262, 2307, 2361
BseLI	CCNNNNNNNGG	3 cut(s)	101, 131, 1177
BseMI	GCAATG	2 cut(s)	874, 1344
BseMII	CTCAG	5 cut(s)	773, 1089, 1273, 2102, 2358
BseNI	ACTGG	4 cut(s)	640, 718, 1199, 1981
BseRI	GAGGAG	2 cut(s)	1446, 2382
BseSI	GKGCMC	2 cut(s)	1132, 1486
BseXI	GCAGC	9 cut(s)	340, 986, 1603, 2325, 2428, 2431, 2469, 2645, 2659
BsgI	GTGCAG	4 cut(s)	1101, 1263, 1724, 2398
Bsh1236I	CGCG	1 cut(s)	2531
BshFI	GGCC	7 cut(s)	20, 702, 780, 1309, 1611, 1997, 2747
BshNI	GGYRCC	1 cut(s)	1878
BshTI	ACCGGT	1 cut(s)	1949
BsiHKAI	GWGCWC	1 cut(s)	1132
BsiHKCI	CYCGRG	1 cut(s)	703
BsiSI	CCGG	8 cut(s)	32, 118, 704, 1479, 1950, 2325, 2377, 2744
BslFI	GGGAC	1 cut(s)	310
BslI	CCNNNNNNNGG	3 cut(s)	101, 131, 1177
BsmAI	GTCTC	5 cut(s)	43, 115, 382, 599, 1192
BsmBI	CGTCTC	1 cut(s)	1192
BsmFI	GGGAC	1 cut(s)	310
BsmI	GAATGC	2 cut(s)	2489, 2580
BsnI	GGCC	7 cut(s)	20, 702, 780, 1309, 1611, 1997, 2747
Bso31I	GGTCTC	1 cut(s)	115
BsoBI	CYCGRG	1 cut(s)	703
Bsp119I	TTCGAA	1 cut(s)	255
Bsp1286I	GDGCHC	2 cut(s)	1132, 1486
Bsp13I	TCCGGA	1 cut(s)	117
Bsp143I	GATC	7 cut(s)	274, 335, 1147, 1451, 1498, 2101, 2147
Bsp19I	CCATGG	1 cut(s)	2266
BspACI	CCGC	7 cut(s)	367, 1535, 1832, 1994, 2333, 2531, 2640
BspANI	GGCC	7 cut(s)	20, 702, 780, 1309, 1611, 1997, 2747
BspCNI	CTCAG	5 cut(s)	774, 1090, 1272, 2103, 2359
BspEI	TCCGGA	1 cut(s)	117
BspFNI	CGCG	1 cut(s)	2531
BspHI	TCATGA	1 cut(s)	1684
BspLI	GGNNCC	6 cut(s)	432, 1500, 1512, 1880, 2149, 2715
BspMAI	CTGCAG	2 cut(s)	2487, 2677
BspMI	ACCTGC	1 cut(s)	2666
BspOI	GCTAGC	2 cut(s)	1064, 1661
BspPI	GGATC	4 cut(s)	1493, 1506, 2142, 2155
BspT104I	TTCGAA	1 cut(s)	255
BspT107I	GGYRCC	1 cut(s)	1878
BspTNI	GGTCTC	1 cut(s)	115
BsrDI	GCAATG	2 cut(s)	874, 1344
BsrFI	RCCGGY	1 cut(s)	1949
BsrI	ACTGG	4 cut(s)	640, 718, 1199, 1981
BssAI	RCCGGY	1 cut(s)	1949
BssECI	CCNNGG	4 cut(s)	399, 703, 1479, 2266
BssMI	GATC	7 cut(s)	274, 335, 1147, 1451, 1498, 2101, 2147
BssNI	GRCGYC	1 cut(s)	461
BssSI	CACGAG	2 cut(s)	1020, 2396
BssT1I	CCWWGG	1 cut(s)	2266
Bst2BI	CACGAG	2 cut(s)	1020, 2396
Bst2UI	CCWGG	3 cut(s)	385, 651, 2353
Bst4CI	ACNGT	7 cut(s)	205, 301, 393, 682, 2409, 2562, 2695
Bst6I	CTCTTC	3 cut(s)	155, 339, 405
BstACI	GRCGYC	1 cut(s)	461
BstAPI	GCANNNNNTGC	3 cut(s)	364, 767, 2672
BstBAI	YACGTR	1 cut(s)	2687
BstBI	TTCGAA	1 cut(s)	255
BstC8I	GCNNGC	8 cut(s)	512, 1062, 1620, 1659, 2209, 2317, 2487, 2638
BstDEI	CTNAG	8 cut(s)	308, 782, 915, 1098, 1259, 1461, 2111, 2367
BstDSI	CCRYGG	1 cut(s)	2266
BstF5I	GGATG	9 cut(s)	421, 550, 580, 1110, 2121, 2236, 2262, 2307, 2361
BstFNI	CGCG	1 cut(s)	2531
BstHHI	GCGC	1 cut(s)	1560
BstKTI	GATC	7 cut(s)	277, 338, 1150, 1454, 1501, 2104, 2150
BstMAI	GTCTC	5 cut(s)	43, 115, 382, 599, 1192
BstMBI	GATC	7 cut(s)	274, 335, 1147, 1451, 1498, 2101, 2147
BstMWI	GCNNNNNNNGC	8 cut(s)	364, 767, 878, 1231, 1600, 2321, 2330, 2672
BstNI	CCWGG	3 cut(s)	385, 651, 2353
BstNSI	RCATGY	2 cut(s)	1096, 1665
BstPAI	GACNNNNGTC	1 cut(s)	394
BstSCI	CCNGG	7 cut(s)	31, 383, 649, 702, 703, 1478, 2351
BstSFI	CTRYAG	3 cut(s)	1613, 2483, 2673
BstSLI	GKGCMC	2 cut(s)	1132, 1486
BstUI	CGCG	1 cut(s)	2531
BstV1I	GCAGC	9 cut(s)	340, 986, 1603, 2325, 2428, 2431, 2469, 2645, 2659
BstV2I	GAAGAC	1 cut(s)	2504
BstX2I	RGATCY	3 cut(s)	1498, 2101, 2147
BstYI	RGATCY	3 cut(s)	1498, 2101, 2147
Bsu36I	CCTNAGG	1 cut(s)	2111
BsuI	GTATCC	1 cut(s)	1371
BsuRI	GGCC	7 cut(s)	20, 702, 780, 1309, 1611, 1997, 2747
BtgI	CCRYGG	1 cut(s)	2266
BtsCI	GGATG	9 cut(s)	421, 550, 580, 1110, 2121, 2236, 2262, 2307, 2361
BtsIMutI	CAGTG	1 cut(s)	1974
BveI	ACCTGC	1 cut(s)	2666
Cac8I	GCNNGC	8 cut(s)	512, 1062, 1620, 1659, 2209, 2317, 2487, 2638
CaiI	CAGNNNCTG	1 cut(s)	2672
CciI	TCATGA	1 cut(s)	1684
CfoI	GCGC	1 cut(s)	1560
Cfr10I	RCCGGY	1 cut(s)	1949
Cfr13I	GGNCC	2 cut(s)	701, 2074
Cfr9I	CCCGGG	1 cut(s)	703
CseI	GACGC	3 cut(s)	450, 2200, 2321
Csp6I	GTAC	7 cut(s)	280, 675, 683, 753, 1289, 1672, 2558
CspAI	ACCGGT	1 cut(s)	1949
CviQI	GTAC	7 cut(s)	280, 675, 683, 753, 1289, 1672, 2558
DdeI	CTNAG	8 cut(s)	308, 782, 915, 1098, 1259, 1461, 2111, 2367
DpnI	GATC	7 cut(s)	276, 337, 1149, 1453, 1500, 2103, 2149
DpnII	GATC	7 cut(s)	274, 335, 1147, 1451, 1498, 2101, 2147
EaeI	YGGCCR	1 cut(s)	18
Eam1104I	CTCTTC	3 cut(s)	155, 339, 405
EarI	CTCTTC	3 cut(s)	155, 339, 405
EciI	GGCGGA	1 cut(s)	2348
Eco130I	CCWWGG	1 cut(s)	2266
Eco147I	AGGCCT	2 cut(s)	1309, 1611
Eco31I	GGTCTC	1 cut(s)	115
Eco47I	GGWCC	1 cut(s)	2074
Eco57I	CTGAAG	1 cut(s)	456
Eco72I	CACGTG	1 cut(s)	2687
Eco81I	CCTNAGG	1 cut(s)	2111
Eco88I	CYCGRG	1 cut(s)	703
EcoRI	GAATTC	3 cut(s)	193, 251, 995
EcoRII	CCWGG	3 cut(s)	383, 649, 2351
EcoT14I	CCWWGG	1 cut(s)	2266
ErhI	CCWWGG	1 cut(s)	2266
Esp3I	CGTCTC	1 cut(s)	1192
FalI	AAGNNNNNCTT	2 cut(s)	1661, 1693
FaqI	GGGAC	1 cut(s)	310
FauNDI	CATATG	2 cut(s)	1416, 1633
FbaI	TGATCA	1 cut(s)	274
FblI	GTMKAC	1 cut(s)	735
FokI	GGATG	9 cut(s)	428, 557, 587, 1117, 2128, 2243, 2269, 2314, 2368
FspBI	CTAG	6 cut(s)	722, 1061, 1187, 1658, 1934, 2423
GlaI	GCGC	1 cut(s)	1559
GsuI	CTGGAG	1 cut(s)	1216
HaeIII	GGCC	7 cut(s)	20, 702, 780, 1309, 1611, 1997, 2747
HapII	CCGG	8 cut(s)	32, 118, 704, 1479, 1950, 2325, 2377, 2744
HgaI	GACGC	3 cut(s)	450, 2200, 2321
HhaI	GCGC	1 cut(s)	1560
Hin1I	GRCGYC	1 cut(s)	461
Hin6I	GCGC	1 cut(s)	1558
HinP1I	GCGC	1 cut(s)	1558
HincII	GTYRAC	2 cut(s)	2569, 2590
HindII	GTYRAC	2 cut(s)	2569, 2590
HindIII	AAGCTT	3 cut(s)	955, 1962, 2064
HpaI	GTTAAC	1 cut(s)	2590
HpaII	CCGG	8 cut(s)	32, 118, 704, 1479, 1950, 2325, 2377, 2744
HphI	GGTGA	5 cut(s)	19, 1013, 1663, 2131, 2489
HpyCH4III	ACNGT	7 cut(s)	205, 301, 393, 682, 2409, 2562, 2695
HpyCH4IV	ACGT	2 cut(s)	1240, 2686
HpyF10VI	GCNNNNNNNGC	8 cut(s)	364, 767, 878, 1231, 1600, 2321, 2330, 2672
HpyF3I	CTNAG	8 cut(s)	308, 782, 915, 1098, 1259, 1461, 2111, 2367
HpySE526I	ACGT	2 cut(s)	1240, 2686
Hsp92I	GRCGYC	1 cut(s)	461
HspAI	GCGC	1 cut(s)	1558
Kpn2I	TCCGGA	1 cut(s)	117
Ksp22I	TGATCA	1 cut(s)	274
KspAI	GTTAAC	1 cut(s)	2590
Kzo9I	GATC	7 cut(s)	274, 335, 1147, 1451, 1498, 2101, 2147
LmnI	GCTCC	6 cut(s)	430, 1042, 1574, 2033, 2335, 2669
Lsp1109I	GCAGC	9 cut(s)	340, 986, 1603, 2325, 2428, 2431, 2469, 2645, 2659
LweI	GCATC	5 cut(s)	406, 1110, 1644, 2194, 2346
MaeI	CTAG	6 cut(s)	722, 1061, 1187, 1658, 1934, 2423
MaeII	ACGT	2 cut(s)	1240, 2686
MaeIII	GTNAC	7 cut(s)	709, 910, 1393, 1939, 2041, 2212, 2259
MalI	GATC	7 cut(s)	276, 337, 1149, 1453, 1500, 2103, 2149
MboI	GATC	7 cut(s)	274, 335, 1147, 1451, 1498, 2101, 2147
MflI	RGATCY	3 cut(s)	1498, 2101, 2147
MhlI	GDGCHC	2 cut(s)	1132, 1486
MlsI	TGGCCA	1 cut(s)	20
MluNI	TGGCCA	1 cut(s)	20
MlyI	GAGTC	1 cut(s)	494
MmeI	TCCRAC	1 cut(s)	1323
Mox20I	TGGCCA	1 cut(s)	20
MroI	TCCGGA	1 cut(s)	117
MroXI	GAANNNNTTC	4 cut(s)	251, 1469, 2516, 2538
MscI	TGGCCA	1 cut(s)	20
MslI	CAYNNNNRTG	4 cut(s)	519, 1091, 1649, 2280
Msp20I	TGGCCA	1 cut(s)	20
MspI	CCGG	8 cut(s)	32, 118, 704, 1479, 1950, 2325, 2377, 2744
MspR9I	CCNGG	7 cut(s)	33, 385, 651, 704, 705, 1480, 2353
Mva1269I	GAATGC	2 cut(s)	2489, 2580
MvaI	CCWGG	3 cut(s)	385, 651, 2353
MvnI	CGCG	1 cut(s)	2531
MwoI	GCNNNNNNNGC	8 cut(s)	364, 767, 878, 1231, 1600, 2321, 2330, 2672
NciI	CCSGG	4 cut(s)	33, 704, 705, 1480
NcoI	CCATGG	1 cut(s)	2266
NdeI	CATATG	2 cut(s)	1416, 1633
NdeII	GATC	7 cut(s)	274, 335, 1147, 1451, 1498, 2101, 2147
NheI	GCTAGC	2 cut(s)	1060, 1657
NlaIV	GGNNCC	6 cut(s)	432, 1500, 1512, 1880, 2149, 2715
NmuCI	GTSAC	2 cut(s)	1939, 2212
NspI	RCATGY	2 cut(s)	1096, 1665
NspV	TTCGAA	1 cut(s)	255
PagI	TCATGA	1 cut(s)	1684
PceI	AGGCCT	2 cut(s)	1309, 1611
PcsI	WCGNNNNNNNCGW	1 cut(s)	2501
PctI	GAATGC	2 cut(s)	2489, 2580
PdmI	GAANNNNTTC	4 cut(s)	251, 1469, 2516, 2538
PfeI	GAWTC	9 cut(s)	166, 349, 448, 475, 1050, 1140, 2380, 2608, 2655
PflMI	CCANNNNNTGG	1 cut(s)	1177
PfoI	TCCNGGA	1 cut(s)	383
PinAI	ACCGGT	1 cut(s)	1949
PleI	GAGTC	1 cut(s)	493
PmaCI	CACGTG	1 cut(s)	2687
PmlI	CACGTG	1 cut(s)	2687
PpsI	GAGTC	1 cut(s)	493
Ppu21I	YACGTR	1 cut(s)	2687
PshAI	GACNNNNGTC	1 cut(s)	394
PsiI	TTATAA	1 cut(s)	2157
Psp1406I	AACGTT	1 cut(s)	1240
Psp6I	CCWGG	3 cut(s)	383, 649, 2351
PspCI	CACGTG	1 cut(s)	2687
PspGI	CCWGG	3 cut(s)	383, 649, 2351
PspN4I	GGNNCC	6 cut(s)	432, 1500, 1512, 1880, 2149, 2715
PspPI	GGNCC	2 cut(s)	701, 2074
PsrI	GAACNNNNNNTAC	2 cut(s)	1779, 1811
PstI	CTGCAG	2 cut(s)	2487, 2677
PstNI	CAGNNNCTG	1 cut(s)	2672
PsuI	RGATCY	3 cut(s)	1498, 2101, 2147
RsaI	GTAC	7 cut(s)	281, 676, 684, 754, 1290, 1673, 2559
RsaNI	GTAC	7 cut(s)	280, 675, 683, 753, 1289, 1672, 2558
RseI	CAYNNNNRTG	4 cut(s)	519, 1091, 1649, 2280
Sau3AI	GATC	7 cut(s)	274, 335, 1147, 1451, 1498, 2101, 2147
Sau96I	GGNCC	2 cut(s)	701, 2074
ScaI	AGTACT	1 cut(s)	281
SchI	GAGTC	1 cut(s)	494
ScrFI	CCNGG	7 cut(s)	33, 385, 651, 704, 705, 1480, 2353
SduI	GDGCHC	2 cut(s)	1132, 1486
SfaNI	GCATC	5 cut(s)	406, 1110, 1644, 2194, 2346
SfcI	CTRYAG	3 cut(s)	1613, 2483, 2673
SfuI	TTCGAA	1 cut(s)	255
SinI	GGWCC	1 cut(s)	2074
SmaI	CCCGGG	1 cut(s)	705
SmiMI	CAYNNNNRTG	4 cut(s)	519, 1091, 1649, 2280
SseBI	AGGCCT	2 cut(s)	1309, 1611
SsiI	CCGC	7 cut(s)	367, 1535, 1832, 1994, 2333, 2531, 2640
SspI	AATATT	1 cut(s)	1158
SspMI	CTAG	6 cut(s)	722, 1061, 1187, 1658, 1934, 2423
StuI	AGGCCT	2 cut(s)	1309, 1611
StyD4I	CCNGG	7 cut(s)	31, 383, 649, 702, 703, 1478, 2351
StyI	CCWWGG	1 cut(s)	2266
TaaI	ACNGT	7 cut(s)	205, 301, 393, 682, 2409, 2562, 2695
TaiI	ACGT	2 cut(s)	1243, 2689
TaqI	TCGA	9 cut(s)	110, 221, 255, 338, 451, 1855, 2238, 2495, 2606
TatI	WGTACW	5 cut(s)	279, 674, 752, 1288, 1671
TauI	GCSGC	2 cut(s)	1835, 1997
TfiI	GAWTC	9 cut(s)	166, 349, 448, 475, 1050, 1140, 2380, 2608, 2655
TscAI	CASTG	1 cut(s)	1981
TseFI	GTSAC	2 cut(s)	1939, 2212
TseI	GCWGC	9 cut(s)	328, 974, 1591, 2338, 2441, 2444, 2482, 2633, 2672
Tsp45I	GTSAC	2 cut(s)	1939, 2212
TspDTI	ATGAA	8 cut(s)	531, 561, 591, 855, 1008, 1322, 1520, 1673
TspGWI	ACGGA	2 cut(s)	2648, 2726
TspMI	CCCGGG	1 cut(s)	703
TspRI	CASTG	1 cut(s)	1981
Van91I	CCANNNNNTGG	1 cut(s)	1177
VneI	GTGCAC	1 cut(s)	1128
VpaK11BI	GGWCC	1 cut(s)	2074
XapI	RAATTY	9 cut(s)	193, 237, 251, 257, 442, 467, 824, 985, 995
XceI	RCATGY	2 cut(s)	1096, 1665
XmaI	CCCGGG	1 cut(s)	703
XmiI	GTMKAC	1 cut(s)	735
XmnI	GAANNNNTTC	4 cut(s)	251, 1469, 2516, 2538
XspI	CTAG	6 cut(s)	722, 1061, 1187, 1658, 1934, 2423
ZrmI	AGTACT	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.