FvH4_3g12280

Phosphate-induced protein 1 conserved region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0016520
Physical Location & Seq
Forward (+)
7267635 .. 7268654
1020 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g12280.t1

Sequence Viewer

Length: 1020 bp
ATGATGCAAAACCTGCAGTGCAACTTCTTCTTCTTGCTTTCCTGCATTCTTTTCTGTACTACTTTGGCTCTTCCATGGAGCCAAAGCAGAGAGTTCAACCAAGCCAAAAACTATGAGGGCTCTTCTGATTTTGTGGACCTTCAGTACCACATGGGTCCTGTGCTTTCTTCTTCTCCAATCAACCTCTACATTATTTGGTATGGGAATTGGAACCCAACTCACCAATCCACCATTAGAGATTTCATCTACTCACTCTCTTCACCAGCCCCCTACCCTGCTGTTTCTGATTGGTGGAAGACTGTGAGGCTCTACACTGATCAAACTGGCTCAAACATCACTGGGTCTATTTCCCTTTCTGGTGAGTTCTATGACTCTAAGTACTCCCATGGCGGTTCTCTTAGCCGATTGTCAATGCAATCCATCATCAAGCATGCTGTCACTTCATCATATCCAAGAGCATTACCTCTCAATCCAAACAATGGTCTCTACTTGGTTCTAACCTCTCCTGATGTTAGAGTTCAAGATTTCTGCAGAGCAGTGTGTGGTTTTCATTACTTCACATTTCCAACCATTGTTGGTGTGACTGTACCTTATGCTTGGGTTGGTAACAGTGGGAAGCAATGTCCTGGCATCTGTGCATACCCATTTGCGTGGCCTAAGAACTCAGGCAGGCCACCACCAAGCACAAATGGAGGCAACAACATAATGAGAGCGCCGAATGGCGATCCGGGTGTCGATGGGATGATCAGTGTGATAGCTCATGAGCTAGCAGAAGTGTCAAGCAATCCACTTGTGAATGCTTGGTATGCAGGTGATGACCCAACTGCACCAACTGAAATAGCAGATTTGTGTATGGGTGTTTATGGGAGTGGTGGGGGTGGTGGATATGTAGGGGTGGTGTCTAAGGACAGATGGGGAAATGGGTATAATGTTAATGGGGTGAAAGGTAGAAAATTCATGGTGCAATGGGTATGGAACCCTGTGAAAAGAAGATGCTTTGGTCCCAATGCCATGGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Phi_1

Protein Analysis

340

Amino Acids

37.3

Weight (kDa)

8.02

Isoelectric Point (pI)

41.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Phi_1 PF04674 47 - 334 5.1e-100 Phosphate-induced protein 1 conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016520)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G35150
fragaria_vesca FvH4_3g12280
malus_domestica MD10G1232600.v1.1
prunus_persica Prupe.4G111900_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0020091
rosa_laevigata RLG00000032498
rosa_multiflora Rmu_sc0009586.1_g000003
rosa_roxburghii Rroxscaffold_1G00058110
rosa_rugosa Rorug05G0056800
rosa_samantha Rh5AG147000 Rh5BG146400 Rh5CG158100 Rh5DG146000
rosa_wichuraiana Rw5G012990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 800
Acc36I ACCTGC 2 cut(s) 21, 800
AccB7I CCANNNNNTGG 1 cut(s) 479
AciI CCGC 1 cut(s) 390
AclWI GGATC 1 cut(s) 719
AcsI RAATTY 1 cut(s) 953
AcuI CTGAAG 1 cut(s) 125
AfaI GTAC 4 cut(s) 58, 146, 380, 588
AfiI CCNNNNNNNGG 1 cut(s) 479
AgsI TTSAA 2 cut(s) 97, 521
AjnI CCWGG 1 cut(s) 625
AluBI AGCT 2 cut(s) 758, 766
AluI AGCT 2 cut(s) 758, 766
Alw26I GTCTC 1 cut(s) 488
AlwI GGATC 1 cut(s) 719
AoxI GGCC 2 cut(s) 653, 671
ApoI RAATTY 1 cut(s) 953
AspLEI GCGC 1 cut(s) 715
AspS9I GGNCC 3 cut(s) 136, 155, 1001
AsuC2I CCSGG 1 cut(s) 729
AsuHPI GGTGA 5 cut(s) 212, 252, 371, 824, 952
AsuNHI GCTAGC 1 cut(s) 766
AvaII GGWCC 3 cut(s) 136, 155, 1001
BanII GRGCYC 1 cut(s) 122
BbsI GAAGAC 1 cut(s) 302
BccI CCATC 3 cut(s) 428, 731, 906
BciT130I CCWGG 1 cut(s) 627
BclI TGATCA 2 cut(s) 316, 744
BcnI CCSGG 1 cut(s) 729
BcoDI GTCTC 1 cut(s) 488
BfaI CTAG 1 cut(s) 767
BfmI CTRYAG 2 cut(s) 14, 529
BfoI RGCGCY 1 cut(s) 716
BfuAI ACCTGC 2 cut(s) 21, 800
BmcAI AGTACT 1 cut(s) 380
Bme1390I CCNGG 2 cut(s) 627, 729
Bme18I GGWCC 3 cut(s) 136, 155, 1001
BmgT120I GGNCC 3 cut(s) 136, 155, 1001
BmiI GGNNCC 5 cut(s) 80, 156, 212, 977, 1003
BmrFI CCNGG 2 cut(s) 627, 729
BmrI ACTGGG 1 cut(s) 348
BmsI GCATC 2 cut(s) 639, 983
BmtI GCTAGC 1 cut(s) 770
BmuI ACTGGG 1 cut(s) 348
BpiI GAAGAC 1 cut(s) 302
BpuMI CCSGG 1 cut(s) 729
BsaI GGTCTC 1 cut(s) 488
BsaJI CCNNGG 3 cut(s) 74, 385, 1011
Bsc4I CCNNNNNNNGG 1 cut(s) 479
Bse1I ACTGG 2 cut(s) 328, 343
Bse3DI GCAATG 2 cut(s) 626, 971
BseBI CCWGG 1 cut(s) 627
BseDI CCNNGG 3 cut(s) 74, 385, 1011
BseGI GGATG 1 cut(s) 747
BseLI CCNNNNNNNGG 1 cut(s) 479
BseMI GCAATG 2 cut(s) 626, 971
BseMII CTCAG 1 cut(s) 678
BseNI ACTGG 2 cut(s) 328, 343
BsgI GTGCAG 1 cut(s) 810
BshFI GGCC 2 cut(s) 655, 673
BsiSI CCGG 1 cut(s) 728
BslFI GGGAC 1 cut(s) 987
BslI CCNNNNNNNGG 1 cut(s) 479
BsmAI GTCTC 1 cut(s) 488
BsmFI GGGAC 1 cut(s) 987
BsmI GAATGC 2 cut(s) 45, 802
BsnI GGCC 2 cut(s) 655, 673
Bso31I GGTCTC 1 cut(s) 488
Bsp1286I GDGCHC 1 cut(s) 122
Bsp143I GATC 3 cut(s) 316, 724, 744
Bsp19I CCATGG 3 cut(s) 74, 385, 1011
BspACI CCGC 1 cut(s) 390
BspANI GGCC 2 cut(s) 655, 673
BspCNI CTCAG 1 cut(s) 677
BspHI TCATGA 1 cut(s) 760
BspLI GGNNCC 5 cut(s) 80, 156, 212, 977, 1003
BspMAI CTGCAG 2 cut(s) 18, 533
BspMI ACCTGC 2 cut(s) 21, 800
BspOI GCTAGC 1 cut(s) 770
BspPI GGATC 1 cut(s) 719
BspQI GCTCTTC 2 cut(s) 75, 127
BspTNI GGTCTC 1 cut(s) 488
BsrDI GCAATG 2 cut(s) 626, 971
BsrI ACTGG 2 cut(s) 328, 343
BssECI CCNNGG 3 cut(s) 74, 385, 1011
BssMI GATC 3 cut(s) 316, 724, 744
BssT1I CCWWGG 3 cut(s) 74, 385, 1011
Bst2UI CCWGG 1 cut(s) 627
Bst4CI ACNGT 3 cut(s) 301, 586, 611
Bst6I CTCTTC 3 cut(s) 75, 127, 262
BstAPI GCANNNNNTGC 1 cut(s) 13
BstC8I GCNNGC 3 cut(s) 432, 671, 768
BstDEI CTNAG 5 cut(s) 375, 398, 657, 664, 903
BstDSI CCRYGG 3 cut(s) 74, 385, 1011
BstF5I GGATG 1 cut(s) 747
BstH2I RGCGCY 1 cut(s) 716
BstHHI GCGC 1 cut(s) 715
BstKTI GATC 3 cut(s) 319, 727, 747
BstMAI GTCTC 1 cut(s) 488
BstMBI GATC 3 cut(s) 316, 724, 744
BstMWI GCNNNNNNNGC 2 cut(s) 13, 806
BstNI CCWGG 1 cut(s) 627
BstNSI RCATGY 1 cut(s) 434
BstSCI CCNGG 2 cut(s) 625, 727
BstSFI CTRYAG 2 cut(s) 14, 529
BstV2I GAAGAC 1 cut(s) 302
BstXI CCANNNNNNTGG 2 cut(s) 651, 1012
BsuRI GGCC 2 cut(s) 655, 673
BtgI CCRYGG 3 cut(s) 74, 385, 1011
BtsCI GGATG 1 cut(s) 747
BtsI GCAGTG 2 cut(s) 23, 543
BtsIMutI CAGTG 6 cut(s) 23, 312, 336, 543, 616, 754
BveI ACCTGC 2 cut(s) 21, 800
Cac8I GCNNGC 3 cut(s) 432, 671, 768
CciI TCATGA 1 cut(s) 760
CfoI GCGC 1 cut(s) 715
Cfr13I GGNCC 3 cut(s) 136, 155, 1001
Csp6I GTAC 4 cut(s) 57, 145, 379, 587
CviAII CATG 7 cut(s) 75, 151, 386, 431, 761, 958, 1012
CviQI GTAC 4 cut(s) 57, 145, 379, 587
DdeI CTNAG 5 cut(s) 375, 398, 657, 664, 903
DpnI GATC 3 cut(s) 318, 726, 746
DpnII GATC 3 cut(s) 316, 724, 744
Eam1104I CTCTTC 3 cut(s) 75, 127, 262
EarI CTCTTC 3 cut(s) 75, 127, 262
Eco130I CCWWGG 3 cut(s) 74, 385, 1011
Eco24I GRGCYC 1 cut(s) 122
Eco31I GGTCTC 1 cut(s) 488
Eco47I GGWCC 3 cut(s) 136, 155, 1001
Eco57I CTGAAG 1 cut(s) 125
EcoO109I RGGNCCY 1 cut(s) 155
EcoRII CCWGG 1 cut(s) 625
EcoT14I CCWWGG 3 cut(s) 74, 385, 1011
EcoT38I GRGCYC 1 cut(s) 122
ErhI CCWWGG 3 cut(s) 74, 385, 1011
FaeI CATG 7 cut(s) 78, 154, 389, 434, 764, 961, 1015
FaqI GGGAC 1 cut(s) 987
FatI CATG 7 cut(s) 74, 150, 385, 430, 760, 957, 1011
FbaI TGATCA 2 cut(s) 316, 744
FokI GGATG 1 cut(s) 754
FriOI GRGCYC 1 cut(s) 122
FspBI CTAG 1 cut(s) 767
GlaI GCGC 1 cut(s) 714
HaeII RGCGCY 1 cut(s) 716
HaeIII GGCC 2 cut(s) 655, 673
HapII CCGG 1 cut(s) 728
HhaI GCGC 1 cut(s) 715
Hin1II CATG 7 cut(s) 78, 154, 389, 434, 764, 961, 1015
Hin6I GCGC 1 cut(s) 713
HinP1I GCGC 1 cut(s) 713
HinfI GANTC 1 cut(s) 371
HpaII CCGG 1 cut(s) 728
HphI GGTGA 5 cut(s) 212, 252, 371, 824, 952
Hpy166II GTNNAC 1 cut(s) 136
Hpy188I TCNGA 2 cut(s) 127, 286
Hpy188III TCNNGA 3 cut(s) 506, 521, 761
Hpy8I GTNNAC 1 cut(s) 136
HpyAV CCTTC 1 cut(s) 149
HpyCH4III ACNGT 3 cut(s) 301, 586, 611
HpyF10VI GCNNNNNNNGC 2 cut(s) 13, 806
HpyF3I CTNAG 5 cut(s) 375, 398, 657, 664, 903
Hsp92II CATG 7 cut(s) 78, 154, 389, 434, 764, 961, 1015
HspAI GCGC 1 cut(s) 713
Ksp22I TGATCA 2 cut(s) 316, 744
Kzo9I GATC 3 cut(s) 316, 724, 744
LguI GCTCTTC 2 cut(s) 75, 127
LmnI GCTCC 1 cut(s) 78
LweI GCATC 2 cut(s) 639, 983
MaeI CTAG 1 cut(s) 767
MaeIII GTNAC 3 cut(s) 436, 580, 605
MalI GATC 3 cut(s) 318, 726, 746
MboI GATC 3 cut(s) 316, 724, 744
MboII GAAGA 9 cut(s) 19, 22, 62, 114, 159, 162, 249, 307, 1002
MhlI GDGCHC 1 cut(s) 122
MluCI AATT 2 cut(s) 205, 953
MlyI GAGTC 1 cut(s) 365
MmeI TCCRAC 1 cut(s) 590
MnlI CCTC 6 cut(s) 109, 194, 297, 474, 511, 686
MseI TTAA 1 cut(s) 933
MslI CAYNNNNRTG 1 cut(s) 649
MspI CCGG 1 cut(s) 728
MspR9I CCNGG 2 cut(s) 627, 729
Mva1269I GAATGC 2 cut(s) 45, 802
MvaI CCWGG 1 cut(s) 627
MwoI GCNNNNNNNGC 2 cut(s) 13, 806
NciI CCSGG 1 cut(s) 729
NcoI CCATGG 3 cut(s) 74, 385, 1011
NdeII GATC 3 cut(s) 316, 724, 744
NheI GCTAGC 1 cut(s) 766
NlaIII CATG 7 cut(s) 78, 154, 389, 434, 764, 961, 1015
NlaIV GGNNCC 5 cut(s) 80, 156, 212, 977, 1003
NmuCI GTSAC 2 cut(s) 436, 580
NspI RCATGY 1 cut(s) 434
PaeI GCATGC 1 cut(s) 434
PagI TCATGA 1 cut(s) 760
PaqCI CACCTGC 1 cut(s) 800
PciSI GCTCTTC 2 cut(s) 75, 127
PctI GAATGC 2 cut(s) 45, 802
PflMI CCANNNNNTGG 1 cut(s) 479
PleI GAGTC 1 cut(s) 365
PpsI GAGTC 1 cut(s) 365
PpuMI RGGWCCY 1 cut(s) 155
Psp5II RGGWCCY 1 cut(s) 155
Psp6I CCWGG 1 cut(s) 625
PspGI CCWGG 1 cut(s) 625
PspN4I GGNNCC 5 cut(s) 80, 156, 212, 977, 1003
PspPI GGNCC 3 cut(s) 136, 155, 1001
PspPPI RGGWCCY 1 cut(s) 155
PstI CTGCAG 2 cut(s) 18, 533
RsaI GTAC 4 cut(s) 58, 146, 380, 588
RsaNI GTAC 4 cut(s) 57, 145, 379, 587
RseI CAYNNNNRTG 1 cut(s) 649
SapI GCTCTTC 2 cut(s) 75, 127
SaqAI TTAA 1 cut(s) 933
Sau3AI GATC 3 cut(s) 316, 724, 744
Sau96I GGNCC 3 cut(s) 136, 155, 1001
ScaI AGTACT 1 cut(s) 380
SchI GAGTC 1 cut(s) 365
ScrFI CCNGG 2 cut(s) 627, 729
SduI GDGCHC 1 cut(s) 122
SfaNI GCATC 2 cut(s) 639, 983
SfcI CTRYAG 2 cut(s) 14, 529
SinI GGWCC 3 cut(s) 136, 155, 1001
SmiMI CAYNNNNRTG 1 cut(s) 649
SphI GCATGC 1 cut(s) 434
Sse9I AATT 2 cut(s) 205, 953
SsiI CCGC 1 cut(s) 390
SspMI CTAG 1 cut(s) 767
StyD4I CCNGG 2 cut(s) 625, 727
StyI CCWWGG 3 cut(s) 74, 385, 1011
TaaI ACNGT 3 cut(s) 301, 586, 611
TaqI TCGA 1 cut(s) 735
TasI AATT 2 cut(s) 205, 953
TatI WGTACW 2 cut(s) 56, 378
Tru1I TTAA 1 cut(s) 933
Tru9I TTAA 1 cut(s) 933
TscAI CASTG 6 cut(s) 23, 319, 343, 543, 616, 754
TseFI GTSAC 2 cut(s) 436, 580
Tsp45I GTSAC 2 cut(s) 436, 580
TspDTI ATGAA 4 cut(s) 232, 432, 539, 946
TspRI CASTG 6 cut(s) 23, 319, 343, 543, 616, 754
Van91I CCANNNNNTGG 1 cut(s) 479
VpaK11BI GGWCC 3 cut(s) 136, 155, 1001
XapI RAATTY 1 cut(s) 953
XceI RCATGY 1 cut(s) 434
XspI CTAG 1 cut(s) 767
ZrmI AGTACT 1 cut(s) 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.