Rh5DG146000

Phosphate-induced protein 1 conserved region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0016520
Physical Location & Seq
Forward (+)
14904709 .. 14905578
870 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG146000.1

Sequence Viewer

Length: 870 bp
ATGGGTCCTGTCCTTGCTTCTTCTCCAATCAACGTTTACATTATTTGGTATGGGAATTGGAACCCAACTCACCAATCCACCATTAGAGATTTCATCTACTCACTCTCTTCACCAGCCCCTTACCCTTCTGTTTCTGATTGGTGGAAGACTGTGAGGCTCTACACTGATCAAACTGGCTCAAACATCACTGGGACTATTTCTCTTTCTGGTGAGTTCTATGACTCTAAGTACTCCCATGGCGGTTCTCTTAGCCGATTGTCAATGCAATCCATCATCAAGCATGCTGTCACTTCATCATATCCGAGAGCATTACCTCTCAATCCAAACAATGGTCTCTACTTAGTTCTAACATCTTCTGATGTTAAAGTTCAAGATTTCTGTAGAGCAGTGTGTGGTTTTCACTACTTCACATTTCCAACCATTGTTGGTGTCACTATGCCTTATGCTTGGGTTGGTTACAGTGGGAAGCAATGTCCTGGCATCTGCGCATACCCATTTGCATGGCCCAAGTACTCAGGCAGGCCACCACCTAGCACAAATGGAGGTAACAACATAATGAAAGCGCCGAATGGTGATCCGGGTGTTGATGGGATGATCAGTGTGCTAGCTCATGAGCTAGCAGAAGTGTCAAGCAACCCACTTGTGAATGCTTGGTATGCAGGTGATGACCCAACTGCACCAACTGAAATAGCAGATTTGTGTATGGGGGTTTATGGGAGTGGTGGGGGTGGTGGGTATGTTGGGGTAGTGTCTAAGGACAGATGGGGAAATGGGTATAATGTGAATGGGGTGAAAGGTAGAAAGTTCATGGTGCAATGGGTGTGGAACCCTGTGAAAAGAAGATGCTTTGGTCCCAATGCAATGGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Phi_1

Protein Analysis

289

Amino Acids

31.46

Weight (kDa)

8.64

Isoelectric Point (pI)

38.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Phi_1 PF04674 1 - 284 2.9e-97 Phosphate-induced protein 1 conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016520)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G35150
fragaria_vesca FvH4_3g12280
malus_domestica MD10G1232600.v1.1
prunus_persica Prupe.4G111900_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0020091
rosa_laevigata RLG00000032498
rosa_multiflora Rmu_sc0009586.1_g000003
rosa_roxburghii Rroxscaffold_1G00058110
rosa_rugosa Rorug05G0056800
rosa_samantha Rh5AG147000 Rh5BG146400 Rh5CG158100 Rh5DG146000
rosa_wichuraiana Rw5G012990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 650
Acc16I TGCGCA 1 cut(s) 487
Acc36I ACCTGC 1 cut(s) 650
AccB7I CCANNNNNTGG 1 cut(s) 329
AciI CCGC 1 cut(s) 240
AclI AACGTT 1 cut(s) 33
AclWI GGATC 1 cut(s) 569
AfaI GTAC 2 cut(s) 230, 512
AfiI CCNNNNNNNGG 1 cut(s) 329
AgsI TTSAA 1 cut(s) 371
AjnI CCWGG 1 cut(s) 475
AluBI AGCT 2 cut(s) 608, 616
AluI AGCT 2 cut(s) 608, 616
Alw26I GTCTC 1 cut(s) 338
AlwI GGATC 1 cut(s) 569
AoxI GGCC 2 cut(s) 503, 521
AspLEI GCGC 2 cut(s) 488, 565
AspS9I GGNCC 3 cut(s) 5, 504, 851
AsuC2I CCSGG 1 cut(s) 579
AsuHPI GGTGA 6 cut(s) 62, 102, 221, 584, 674, 802
AsuNHI GCTAGC 2 cut(s) 604, 616
AvaII GGWCC 2 cut(s) 5, 851
BbsI GAAGAC 1 cut(s) 152
BccI CCATC 3 cut(s) 278, 581, 756
BciT130I CCWGG 1 cut(s) 477
BclI TGATCA 2 cut(s) 166, 594
BcnI CCSGG 1 cut(s) 579
BcoDI GTCTC 1 cut(s) 338
BfaI CTAG 3 cut(s) 531, 605, 617
BfmI CTRYAG 1 cut(s) 379
BfoI RGCGCY 1 cut(s) 566
BfuAI ACCTGC 1 cut(s) 650
BmcAI AGTACT 2 cut(s) 230, 512
Bme1390I CCNGG 2 cut(s) 477, 579
Bme18I GGWCC 2 cut(s) 5, 851
BmgT120I GGNCC 3 cut(s) 5, 504, 851
BmiI GGNNCC 4 cut(s) 6, 62, 827, 853
BmrFI CCNGG 2 cut(s) 477, 579
BmrI ACTGGG 1 cut(s) 198
BmsI GCATC 2 cut(s) 489, 833
BmtI GCTAGC 2 cut(s) 608, 620
BmuI ACTGGG 1 cut(s) 198
BpiI GAAGAC 1 cut(s) 152
BpuMI CCSGG 1 cut(s) 579
BsaI GGTCTC 1 cut(s) 338
BsaJI CCNNGG 1 cut(s) 235
Bsc4I CCNNNNNNNGG 1 cut(s) 329
Bse1I ACTGG 2 cut(s) 178, 193
Bse3DI GCAATG 3 cut(s) 476, 821, 867
BseBI CCWGG 1 cut(s) 477
BseDI CCNNGG 1 cut(s) 235
BseGI GGATG 1 cut(s) 597
BseLI CCNNNNNNNGG 1 cut(s) 329
BseMI GCAATG 3 cut(s) 476, 821, 867
BseMII CTCAG 1 cut(s) 528
BseNI ACTGG 2 cut(s) 178, 193
BsgI GTGCAG 1 cut(s) 660
BshFI GGCC 2 cut(s) 505, 523
BsiSI CCGG 1 cut(s) 578
BslFI GGGAC 2 cut(s) 205, 837
BslI CCNNNNNNNGG 1 cut(s) 329
BsmAI GTCTC 1 cut(s) 338
BsmFI GGGAC 2 cut(s) 205, 837
BsmI GAATGC 1 cut(s) 652
BsnI GGCC 2 cut(s) 505, 523
Bso31I GGTCTC 1 cut(s) 338
Bsp143I GATC 3 cut(s) 166, 574, 594
Bsp19I CCATGG 1 cut(s) 235
BspACI CCGC 1 cut(s) 240
BspANI GGCC 2 cut(s) 505, 523
BspCNI CTCAG 1 cut(s) 527
BspHI TCATGA 1 cut(s) 610
BspLI GGNNCC 4 cut(s) 6, 62, 827, 853
BspMI ACCTGC 1 cut(s) 650
BspOI GCTAGC 2 cut(s) 608, 620
BspPI GGATC 1 cut(s) 569
BspTNI GGTCTC 1 cut(s) 338
BsrDI GCAATG 3 cut(s) 476, 821, 867
BsrI ACTGG 2 cut(s) 178, 193
BssECI CCNNGG 1 cut(s) 235
BssMI GATC 3 cut(s) 166, 574, 594
BssT1I CCWWGG 1 cut(s) 235
Bst2UI CCWGG 1 cut(s) 477
Bst4CI ACNGT 2 cut(s) 151, 461
Bst6I CTCTTC 1 cut(s) 112
BstC8I GCNNGC 4 cut(s) 282, 521, 606, 618
BstDEI CTNAG 5 cut(s) 225, 248, 340, 514, 753
BstDSI CCRYGG 1 cut(s) 235
BstF5I GGATG 1 cut(s) 597
BstH2I RGCGCY 1 cut(s) 566
BstHHI GCGC 2 cut(s) 488, 565
BstKTI GATC 3 cut(s) 169, 577, 597
BstMAI GTCTC 1 cut(s) 338
BstMBI GATC 3 cut(s) 166, 574, 594
BstMWI GCNNNNNNNGC 1 cut(s) 656
BstNI CCWGG 1 cut(s) 477
BstNSI RCATGY 1 cut(s) 284
BstSCI CCNGG 2 cut(s) 475, 577
BstSFI CTRYAG 1 cut(s) 379
BstV2I GAAGAC 1 cut(s) 152
BstXI CCANNNNNNTGG 2 cut(s) 501, 862
BsuRI GGCC 2 cut(s) 505, 523
BtgI CCRYGG 1 cut(s) 235
BtsCI GGATG 1 cut(s) 597
BtsI GCAGTG 1 cut(s) 393
BtsIMutI CAGTG 5 cut(s) 162, 186, 393, 466, 604
BveI ACCTGC 1 cut(s) 650
Cac8I GCNNGC 4 cut(s) 282, 521, 606, 618
CciI TCATGA 1 cut(s) 610
CfoI GCGC 2 cut(s) 488, 565
Cfr13I GGNCC 3 cut(s) 5, 504, 851
Csp6I GTAC 2 cut(s) 229, 511
CspCI CAANNNNNGTGG 2 cut(s) 803, 838
CviAII CATG 5 cut(s) 236, 281, 501, 611, 808
CviJI RGCY 8 cut(s) 116, 157, 177, 252, 505, 523, 608, 616
CviKI_1 RGCY 8 cut(s) 116, 157, 177, 252, 505, 523, 608, 616
CviQI GTAC 2 cut(s) 229, 511
DdeI CTNAG 5 cut(s) 225, 248, 340, 514, 753
DpnI GATC 3 cut(s) 168, 576, 596
DpnII GATC 3 cut(s) 166, 574, 594
Eam1104I CTCTTC 1 cut(s) 112
EarI CTCTTC 1 cut(s) 112
Eco130I CCWWGG 1 cut(s) 235
Eco31I GGTCTC 1 cut(s) 338
Eco47I GGWCC 2 cut(s) 5, 851
EcoO109I RGGNCCY 1 cut(s) 5
EcoRII CCWGG 1 cut(s) 475
EcoT14I CCWWGG 1 cut(s) 235
ErhI CCWWGG 1 cut(s) 235
FaeI CATG 5 cut(s) 239, 284, 504, 614, 811
FaqI GGGAC 2 cut(s) 205, 837
FatI CATG 5 cut(s) 235, 280, 500, 610, 807
FbaI TGATCA 2 cut(s) 166, 594
FokI GGATG 1 cut(s) 604
FspBI CTAG 3 cut(s) 531, 605, 617
FspI TGCGCA 1 cut(s) 487
GlaI GCGC 2 cut(s) 487, 564
HaeII RGCGCY 1 cut(s) 566
HaeIII GGCC 2 cut(s) 505, 523
HapII CCGG 1 cut(s) 578
HhaI GCGC 2 cut(s) 488, 565
Hin1II CATG 5 cut(s) 239, 284, 504, 614, 811
Hin6I GCGC 2 cut(s) 486, 563
HinP1I GCGC 2 cut(s) 486, 563
HinfI GANTC 1 cut(s) 221
HpaII CCGG 1 cut(s) 578
HphI GGTGA 6 cut(s) 62, 102, 221, 584, 674, 802
Hpy166II GTNNAC 1 cut(s) 37
Hpy188I TCNGA 3 cut(s) 136, 303, 358
Hpy188III TCNNGA 2 cut(s) 371, 611
Hpy8I GTNNAC 1 cut(s) 37
HpyAV CCTTC 1 cut(s) 135
HpyCH4III ACNGT 2 cut(s) 151, 461
HpyCH4IV ACGT 1 cut(s) 33
HpyCH4V TGCA 6 cut(s) 265, 500, 659, 677, 814, 860
HpyF10VI GCNNNNNNNGC 1 cut(s) 656
HpyF3I CTNAG 5 cut(s) 225, 248, 340, 514, 753
HpySE526I ACGT 1 cut(s) 33
Hsp92II CATG 5 cut(s) 239, 284, 504, 614, 811
HspAI GCGC 2 cut(s) 486, 563
Ksp22I TGATCA 2 cut(s) 166, 594
Kzo9I GATC 3 cut(s) 166, 574, 594
LweI GCATC 2 cut(s) 489, 833
MaeI CTAG 3 cut(s) 531, 605, 617
MaeII ACGT 1 cut(s) 33
MaeIII GTNAC 4 cut(s) 286, 430, 455, 545
MalI GATC 3 cut(s) 168, 576, 596
MboI GATC 3 cut(s) 166, 574, 594
MboII GAAGA 5 cut(s) 12, 99, 157, 345, 852
MluCI AATT 1 cut(s) 55
MlyI GAGTC 1 cut(s) 215
MmeI TCCRAC 1 cut(s) 440
MnlI CCTC 3 cut(s) 147, 324, 536
MseI TTAA 1 cut(s) 363
MslI CAYNNNNRTG 1 cut(s) 499
MspI CCGG 1 cut(s) 578
MspR9I CCNGG 2 cut(s) 477, 579
Mva1269I GAATGC 1 cut(s) 652
MvaI CCWGG 1 cut(s) 477
MwoI GCNNNNNNNGC 1 cut(s) 656
NciI CCSGG 1 cut(s) 579
NcoI CCATGG 1 cut(s) 235
NdeII GATC 3 cut(s) 166, 574, 594
NheI GCTAGC 2 cut(s) 604, 616
NlaIII CATG 5 cut(s) 239, 284, 504, 614, 811
NlaIV GGNNCC 4 cut(s) 6, 62, 827, 853
NmuCI GTSAC 2 cut(s) 286, 430
NsbI TGCGCA 1 cut(s) 487
NspI RCATGY 1 cut(s) 284
PaeI GCATGC 1 cut(s) 284
PagI TCATGA 1 cut(s) 610
PaqCI CACCTGC 1 cut(s) 650
PctI GAATGC 1 cut(s) 652
PflMI CCANNNNNTGG 1 cut(s) 329
PleI GAGTC 1 cut(s) 215
PpsI GAGTC 1 cut(s) 215
PpuMI RGGWCCY 1 cut(s) 5
Psp1406I AACGTT 1 cut(s) 33
Psp5II RGGWCCY 1 cut(s) 5
Psp6I CCWGG 1 cut(s) 475
PspGI CCWGG 1 cut(s) 475
PspN4I GGNNCC 4 cut(s) 6, 62, 827, 853
PspPI GGNCC 3 cut(s) 5, 504, 851
PspPPI RGGWCCY 1 cut(s) 5
RsaI GTAC 2 cut(s) 230, 512
RsaNI GTAC 2 cut(s) 229, 511
RseI CAYNNNNRTG 1 cut(s) 499
SaqAI TTAA 1 cut(s) 363
Sau3AI GATC 3 cut(s) 166, 574, 594
Sau96I GGNCC 3 cut(s) 5, 504, 851
ScaI AGTACT 2 cut(s) 230, 512
SchI GAGTC 1 cut(s) 215
ScrFI CCNGG 2 cut(s) 477, 579
SetI ASST 8 cut(s) 36, 316, 532, 547, 610, 618, 664, 799
SfaNI GCATC 2 cut(s) 489, 833
SfcI CTRYAG 1 cut(s) 379
SinI GGWCC 2 cut(s) 5, 851
SmiMI CAYNNNNRTG 1 cut(s) 499
SphI GCATGC 1 cut(s) 284
Sse9I AATT 1 cut(s) 55
SsiI CCGC 1 cut(s) 240
SspMI CTAG 3 cut(s) 531, 605, 617
StyD4I CCNGG 2 cut(s) 475, 577
StyI CCWWGG 1 cut(s) 235
TaaI ACNGT 2 cut(s) 151, 461
TaiI ACGT 1 cut(s) 36
TasI AATT 1 cut(s) 55
TatI WGTACW 2 cut(s) 228, 510
Tru1I TTAA 1 cut(s) 363
Tru9I TTAA 1 cut(s) 363
TscAI CASTG 5 cut(s) 169, 193, 393, 466, 604
TseFI GTSAC 2 cut(s) 286, 430
Tsp45I GTSAC 2 cut(s) 286, 430
TspDTI ATGAA 4 cut(s) 82, 282, 572, 796
TspRI CASTG 5 cut(s) 169, 193, 393, 466, 604
Van91I CCANNNNNTGG 1 cut(s) 329
VpaK11BI GGWCC 2 cut(s) 5, 851
XceI RCATGY 1 cut(s) 284
XspI CTAG 3 cut(s) 531, 605, 617
ZrmI AGTACT 2 cut(s) 230, 512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.