Prupe.4G111900_v2.0.a1

Phosphate-induced protein 1 conserved region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0016520
Physical Location & Seq
Forward (+)
5924416 .. 5926263
1848 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G111900.1

Sequence Viewer

Length: 1011 bp
ATGCAAAAGCTGCATTGCAATTTCTTCTTTCTTGCTTGCTTTGTTTTCTCTGCTACTCTGGCTCATTCATGGAGCCAAAACAGGGAATTCAACCAGGCCAAGAACTATGAGGGATCTTCTGATCTGGTGGACCTTCAGTACCACATGGGTCCTGTCCTTACTTCTCCCATCAACCTTTACATAATTTGGTATGGCAAATGGAACCCAACACACCAATCCACAATTAGAGATTTCATCTATTCTCTTTCTTCTCCTGTCCCTTACCCTTCTGTTGCTGATTGGTGGAGCACTGTGAGGCTCTACACTGATCAAACTGGATCAAACATCACCAGAAGCATTGCTCTCTCTGGAGAGTTCTATGACTCTGCCTACTCCCATGGCAACTATCTCAGCCGTTTATCAATGCAATCCATCATAAAATATGCTGTCACTTCACCATATCCAAGAGCTTTACCTCTCAATCCTCACAATGGCCTCTACTTAGTTTTGTCATCTCCTGATGTTAGAGTTCAAGATTTCTGCAGGGCAGTTTGTGGTTTTCACTACTTCACATTTCCAACCATTGTTGGTGTCACTGTTCCTTATGCTTGGGTTGGTAATAGTGGCACTCAGTGTCCAGGGGTGTGTGCTTACCCTTTTGCCTGGCCTAAGTATTCAGGCAAGCCACCGCCAAGCACAAATGGCGGCAACAACATTATGCGTGCACCGAATGGGGATGCCGGTGCTGACGGGATGATCAGCGTGATAGCTCATGAGCTAGCAGAGGTTTCAAGTAACCCACTTGTGAATGCATGGTATGCAGGTGATGACCCAACTGCACCAACAGAAATTGCAGATTTGTGTATGGGTGTTTATGGGAGTGGTGGGGGTGGAGGGTATGTTGGTGTAGTGTCAAAGGACAAATGGGGAAATGGGTTTAATGTGAATGGGGTGAAAGGAAGGAAGTTCTTGGTGCAATGGGTATGGAGCCCTGTGAAAAGAAGATGCTTTGGTCCCAATGCCATGGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Phi_1

Protein Analysis

337

Amino Acids

37.02

Weight (kDa)

8.05

Isoelectric Point (pI)

37.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016520)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G35150
fragaria_vesca FvH4_3g12280
malus_domestica MD10G1232600.v1.1
prunus_persica Prupe.4G111900_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0020091
rosa_laevigata RLG00000032498
rosa_multiflora Rmu_sc0009586.1_g000003
rosa_roxburghii Rroxscaffold_1G00058110
rosa_rugosa Rorug05G0056800
rosa_samantha Rh5AG147000 Rh5BG146400 Rh5CG158100 Rh5DG146000
rosa_wichuraiana Rw5G012990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 791
Acc36I ACCTGC 1 cut(s) 791
AciI CCGC 2 cut(s) 668, 684
AclWI GGATC 2 cut(s) 121, 325
AcsI RAATTY 1 cut(s) 86
AcuI CTGAAG 1 cut(s) 119
AdeI CACNNNGTG 1 cut(s) 612
AfaI GTAC 1 cut(s) 140
AfiI CCNNNNNNNGG 2 cut(s) 82, 470
AgsI TTSAA 3 cut(s) 91, 512, 771
AjnI CCWGG 3 cut(s) 93, 616, 641
AluBI AGCT 4 cut(s) 10, 449, 749, 757
AluI AGCT 4 cut(s) 10, 449, 749, 757
Alw21I GWGCWC 2 cut(s) 290, 706
Alw44I GTGCAC 1 cut(s) 702
AlwI GGATC 2 cut(s) 121, 325
AoxI GGCC 3 cut(s) 96, 472, 644
ApaLI GTGCAC 1 cut(s) 702
ApeKI GCWGC 1 cut(s) 10
ApoI RAATTY 1 cut(s) 86
AspS9I GGNCC 3 cut(s) 130, 149, 992
AsuHPI GGTGA 4 cut(s) 319, 426, 815, 943
AsuNHI GCTAGC 1 cut(s) 757
AvaII GGWCC 3 cut(s) 130, 149, 992
BaeGI GKGCMC 1 cut(s) 706
BanII GRGCYC 1 cut(s) 971
Bbv12I GWGCWC 2 cut(s) 290, 706
BccI CCATC 2 cut(s) 176, 419
BceAI ACGGC 1 cut(s) 378
BciT130I CCWGG 3 cut(s) 95, 618, 643
BclI TGATCA 2 cut(s) 307, 735
BfaI CTAG 2 cut(s) 758, 1009
BfmI CTRYAG 1 cut(s) 520
BfuAI ACCTGC 1 cut(s) 791
BisI GCNGC 2 cut(s) 11, 685
BlsI GCNGC 2 cut(s) 12, 686
Bme1390I CCNGG 3 cut(s) 95, 618, 643
Bme18I GGWCC 3 cut(s) 130, 149, 992
BmgT120I GGNCC 3 cut(s) 130, 149, 992
BmiI GGNNCC 5 cut(s) 74, 150, 203, 968, 994
BmrFI CCNGG 3 cut(s) 95, 618, 643
BmsI GCATC 2 cut(s) 706, 974
BmtI GCTAGC 1 cut(s) 761
BpmI CTGGAG 1 cut(s) 369
BsaJI CCNNGG 3 cut(s) 376, 617, 1002
BsaXI ACNNNNNCTCC 2 cut(s) 864, 894
Bsc4I CCNNNNNNNGG 2 cut(s) 82, 470
Bse118I RCCGGY 1 cut(s) 719
Bse1I ACTGG 1 cut(s) 319
Bse3DI GCAATG 3 cut(s) 13, 336, 962
BseBI CCWGG 3 cut(s) 95, 618, 643
BseDI CCNNGG 3 cut(s) 376, 617, 1002
BseGI GGATG 2 cut(s) 721, 738
BseLI CCNNNNNNNGG 2 cut(s) 82, 470
BseMI GCAATG 3 cut(s) 13, 336, 962
BseMII CTCAG 2 cut(s) 403, 623
BseNI ACTGG 1 cut(s) 319
BseSI GKGCMC 1 cut(s) 706
BsgI GTGCAG 1 cut(s) 801
BshFI GGCC 3 cut(s) 98, 474, 646
BsiHKAI GWGCWC 2 cut(s) 290, 706
BsiSI CCGG 1 cut(s) 720
BslFI GGGAC 2 cut(s) 242, 978
BslI CCNNNNNNNGG 2 cut(s) 82, 470
BsmFI GGGAC 2 cut(s) 242, 978
BsmI GAATGC 1 cut(s) 793
BsnI GGCC 3 cut(s) 98, 474, 646
Bsp1286I GDGCHC 3 cut(s) 290, 706, 971
Bsp143I GATC 5 cut(s) 113, 121, 307, 317, 735
Bsp19I CCATGG 2 cut(s) 376, 1002
BspACI CCGC 2 cut(s) 668, 684
BspANI GGCC 3 cut(s) 98, 474, 646
BspCNI CTCAG 2 cut(s) 402, 622
BspHI TCATGA 1 cut(s) 751
BspLI GGNNCC 5 cut(s) 74, 150, 203, 968, 994
BspMAI CTGCAG 1 cut(s) 524
BspMI ACCTGC 1 cut(s) 791
BspOI GCTAGC 1 cut(s) 761
BspPI GGATC 2 cut(s) 121, 325
BsrDI GCAATG 3 cut(s) 13, 336, 962
BsrFI RCCGGY 1 cut(s) 719
BsrI ACTGG 1 cut(s) 319
BssAI RCCGGY 1 cut(s) 719
BssECI CCNNGG 3 cut(s) 376, 617, 1002
BssMI GATC 5 cut(s) 113, 121, 307, 317, 735
BssT1I CCWWGG 2 cut(s) 376, 1002
Bst2UI CCWGG 3 cut(s) 95, 618, 643
Bst4CI ACNGT 2 cut(s) 292, 577
BstAPI GCANNNNNTGC 2 cut(s) 10, 797
BstC8I GCNNGC 4 cut(s) 37, 662, 702, 759
BstDEI CTNAG 4 cut(s) 389, 481, 609, 648
BstDSI CCRYGG 2 cut(s) 376, 1002
BstF5I GGATG 2 cut(s) 721, 738
BstKTI GATC 5 cut(s) 116, 124, 310, 320, 738
BstMBI GATC 5 cut(s) 113, 121, 307, 317, 735
BstMWI GCNNNNNNNGC 4 cut(s) 10, 59, 681, 797
BstNI CCWGG 3 cut(s) 95, 618, 643
BstSCI CCNGG 3 cut(s) 93, 616, 641
BstSFI CTRYAG 1 cut(s) 520
BstSLI GKGCMC 1 cut(s) 706
BstX2I RGATCY 1 cut(s) 113
BstXI CCANNNNNNTGG 1 cut(s) 1003
BstYI RGATCY 1 cut(s) 113
BsuRI GGCC 3 cut(s) 98, 474, 646
BtgI CCRYGG 2 cut(s) 376, 1002
BtsCI GGATG 2 cut(s) 721, 738
BtsIMutI CAGTG 4 cut(s) 288, 303, 573, 617
BveI ACCTGC 1 cut(s) 791
Cac8I GCNNGC 4 cut(s) 37, 662, 702, 759
CciI TCATGA 1 cut(s) 751
Cfr10I RCCGGY 1 cut(s) 719
Cfr13I GGNCC 3 cut(s) 130, 149, 992
Csp6I GTAC 1 cut(s) 139
CviAII CATG 6 cut(s) 69, 145, 377, 752, 792, 1003
CviQI GTAC 1 cut(s) 139
DdeI CTNAG 4 cut(s) 389, 481, 609, 648
DpnI GATC 5 cut(s) 115, 123, 309, 319, 737
DpnII GATC 5 cut(s) 113, 121, 307, 317, 735
DraIII CACNNNGTG 1 cut(s) 612
Eco130I CCWWGG 2 cut(s) 376, 1002
Eco24I GRGCYC 1 cut(s) 971
Eco47I GGWCC 3 cut(s) 130, 149, 992
Eco57I CTGAAG 1 cut(s) 119
EcoO109I RGGNCCY 1 cut(s) 149
EcoRI GAATTC 1 cut(s) 86
EcoRII CCWGG 3 cut(s) 93, 616, 641
EcoT14I CCWWGG 2 cut(s) 376, 1002
EcoT22I ATGCAT 1 cut(s) 793
EcoT38I GRGCYC 1 cut(s) 971
ErhI CCWWGG 2 cut(s) 376, 1002
FaeI CATG 6 cut(s) 72, 148, 380, 755, 795, 1006
FaqI GGGAC 2 cut(s) 242, 978
FatI CATG 6 cut(s) 68, 144, 376, 751, 791, 1002
FbaI TGATCA 2 cut(s) 307, 735
Fnu4HI GCNGC 2 cut(s) 11, 685
FokI GGATG 2 cut(s) 728, 745
FriOI GRGCYC 1 cut(s) 971
Fsp4HI GCNGC 2 cut(s) 11, 685
FspBI CTAG 2 cut(s) 758, 1009
GluI GCNGC 2 cut(s) 11, 685
GsuI CTGGAG 1 cut(s) 369
HaeIII GGCC 3 cut(s) 98, 474, 646
HapII CCGG 1 cut(s) 720
Hin1II CATG 6 cut(s) 72, 148, 380, 755, 795, 1006
HinfI GANTC 1 cut(s) 362
HpaII CCGG 1 cut(s) 720
HphI GGTGA 4 cut(s) 319, 426, 815, 943
Hpy166II GTNNAC 2 cut(s) 130, 704
Hpy188I TCNGA 1 cut(s) 121
Hpy188III TCNNGA 4 cut(s) 348, 497, 512, 752
Hpy8I GTNNAC 2 cut(s) 130, 704
HpyAV CCTTC 3 cut(s) 143, 276, 933
HpyCH4III ACNGT 2 cut(s) 292, 577
HpyF10VI GCNNNNNNNGC 4 cut(s) 10, 59, 681, 797
HpyF3I CTNAG 4 cut(s) 389, 481, 609, 648
Hsp92II CATG 6 cut(s) 72, 148, 380, 755, 795, 1006
Ksp22I TGATCA 2 cut(s) 307, 735
Kzo9I GATC 5 cut(s) 113, 121, 307, 317, 735
LmnI GCTCC 3 cut(s) 72, 285, 966
LweI GCATC 2 cut(s) 706, 974
MaeI CTAG 2 cut(s) 758, 1009
MaeIII GTNAC 3 cut(s) 427, 571, 773
MalI GATC 5 cut(s) 115, 123, 309, 319, 737
MboI GATC 5 cut(s) 113, 121, 307, 317, 735
MboII GAAGA 4 cut(s) 16, 108, 240, 993
MflI RGATCY 1 cut(s) 113
MhlI GDGCHC 3 cut(s) 290, 706, 971
MluCI AATT 5 cut(s) 19, 86, 183, 222, 828
MlyI GAGTC 1 cut(s) 356
MmeI TCCRAC 1 cut(s) 581
MnlI CCTC 7 cut(s) 103, 288, 465, 474, 485, 757, 866
Mph1103I ATGCAT 1 cut(s) 793
MseI TTAA 1 cut(s) 918
MspI CCGG 1 cut(s) 720
MspR9I CCNGG 3 cut(s) 95, 618, 643
Mva1269I GAATGC 1 cut(s) 793
MvaI CCWGG 3 cut(s) 95, 618, 643
MwoI GCNNNNNNNGC 4 cut(s) 10, 59, 681, 797
NcoI CCATGG 2 cut(s) 376, 1002
NdeII GATC 5 cut(s) 113, 121, 307, 317, 735
NheI GCTAGC 1 cut(s) 757
NlaIII CATG 6 cut(s) 72, 148, 380, 755, 795, 1006
NlaIV GGNNCC 5 cut(s) 74, 150, 203, 968, 994
NmuCI GTSAC 2 cut(s) 427, 571
NsiI ATGCAT 1 cut(s) 793
PagI TCATGA 1 cut(s) 751
PaqCI CACCTGC 1 cut(s) 791
PctI GAATGC 1 cut(s) 793
PkrI GCNGC 2 cut(s) 12, 686
PleI GAGTC 1 cut(s) 356
PpsI GAGTC 1 cut(s) 356
PpuMI RGGWCCY 1 cut(s) 149
Psp5II RGGWCCY 1 cut(s) 149
Psp6I CCWGG 3 cut(s) 93, 616, 641
PspGI CCWGG 3 cut(s) 93, 616, 641
PspN4I GGNNCC 5 cut(s) 74, 150, 203, 968, 994
PspPI GGNCC 3 cut(s) 130, 149, 992
PspPPI RGGWCCY 1 cut(s) 149
PstI CTGCAG 1 cut(s) 524
PsuI RGATCY 1 cut(s) 113
RsaI GTAC 1 cut(s) 140
RsaNI GTAC 1 cut(s) 139
SaqAI TTAA 1 cut(s) 918
SatI GCNGC 2 cut(s) 11, 685
Sau3AI GATC 5 cut(s) 113, 121, 307, 317, 735
Sau96I GGNCC 3 cut(s) 130, 149, 992
SchI GAGTC 1 cut(s) 356
ScrFI CCNGG 3 cut(s) 95, 618, 643
SduI GDGCHC 3 cut(s) 290, 706, 971
SetI ASST 9 cut(s) 12, 135, 177, 451, 457, 751, 759, 768, 805
SfaNI GCATC 2 cut(s) 706, 974
SfcI CTRYAG 1 cut(s) 520
SinI GGWCC 3 cut(s) 130, 149, 992
Sse9I AATT 5 cut(s) 19, 86, 183, 222, 828
SsiI CCGC 2 cut(s) 668, 684
SspMI CTAG 2 cut(s) 758, 1009
StyD4I CCNGG 3 cut(s) 93, 616, 641
StyI CCWWGG 2 cut(s) 376, 1002
TaaI ACNGT 2 cut(s) 292, 577
TasI AATT 5 cut(s) 19, 86, 183, 222, 828
TauI GCSGC 1 cut(s) 687
Tru1I TTAA 1 cut(s) 918
Tru9I TTAA 1 cut(s) 918
TscAI CASTG 4 cut(s) 295, 310, 580, 617
TseFI GTSAC 2 cut(s) 427, 571
TseI GCWGC 1 cut(s) 10
Tsp45I GTSAC 2 cut(s) 427, 571
TspDTI ATGAA 2 cut(s) 57, 223
TspRI CASTG 4 cut(s) 295, 310, 580, 617
VneI GTGCAC 1 cut(s) 702
VpaK11BI GGWCC 3 cut(s) 130, 149, 992
XapI RAATTY 1 cut(s) 86
XspI CTAG 2 cut(s) 758, 1009
Zsp2I ATGCAT 1 cut(s) 793
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.