Rroxscaffold_1G00058110

Phosphate-induced protein 1 conserved region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0016520
Physical Location & Seq
Reverse (-)
80008417 .. 80009561
1145 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00058110.1

Sequence Viewer

Length: 1122 bp
ATGCAAACCAGTGCCCACCAAAAAGCAAATTATAAAGAAGAATCTCAACCCACTCCTTTACCTTCACATTTCCACTTCCACCAAGGAGCACTAAAAAAACAGGATGATGCAAAATCTGCATTGCAATTTCTTCTTCTTGCTTTCCTGCATTTTTTTTCTACTACTTTGGCTCTTCCATGGAGCCAAAGCAGAGAGTTCAACCAAGCCAAAAACTATGAGGGCTCTTCTGATTTTGTGGACCTTCAGTACCACATGGGTCCTGTCCTTGCGTCTTCTCCAATCAACGTTTACATTATTTGGTATGGGAATTGGAACCCAACTCACCAATCCACCATTAGAGATTTCATCTACTCACTCTCTTCACCAGCCCCTTACCCTTCTGTTTCTGATTGGTGGAAGACTGTGAGGCTCTACACTGATCAAACTGGCTCAAACATCACTGGGACTATTTCTCTTTCTGGTGAGTTCTATGACTCTAAGTACTCCCATGGCGGTTCTCTTAGCCGATTGTCAATGCAATCCATCATCAAGCATGCTGTCACTTCATCATATCCGAGAGCATTACCTCTCAATCCAAACAATGGTCTCTACTTAGTTCTAACATCTTCTGATGTTAAAGTTCAAGATTTCTGTAGAGCAGTGTGTGGTTTTCACTACTTCACATTTCCAACCATTGTTGGTGTCACTATGCCTTATGCTTGGGTTGGTTACAGTGGGAAGCAATGTCCTGGCATCTGCGCATACCCATTTGCATGGCCTAAGTACTCAGGCAGGCCACCACCTAGCACAAATGGAGGTAACAACATAATGAAAGCGCCGAATGGTGATCCGGGTGTCGATGGGATGATCAGTGTGCTAGCTCATGAGCTAGCAGAAGTGTCAAGCAACCCACTTGTGAATGCTTGGTATGCAGGTGATGACCCAACTGCACCAACTGAAATAGCAGATTTGTGTATGGGGGTTTATGGGAGTGGTGGGGGCGGTGGGTATGTTGGGGTAGTGTCTAAGGACAGATGGGGAAATGGGTATAATGTGAATGGGGTGAGAGGTAGACAGTTCATGGTGCAATGGGTGTGGAACCCTGTGAAAAGAAGATGCTTTGGTCCCAATGCTATGGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Phi_1

Protein Analysis

373

Amino Acids

41.18

Weight (kDa)

8.11

Isoelectric Point (pI)

39.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Phi_1 PF04674 81 - 368 1.3e-99 Phosphate-induced protein 1 conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016520)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G35150
fragaria_vesca FvH4_3g12280
malus_domestica MD10G1232600.v1.1
prunus_persica Prupe.4G111900_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0020091
rosa_laevigata RLG00000032498
rosa_multiflora Rmu_sc0009586.1_g000003
rosa_roxburghii Rroxscaffold_1G00058110
rosa_rugosa Rorug05G0056800
rosa_samantha Rh5AG147000 Rh5BG146400 Rh5CG158100 Rh5DG146000
rosa_wichuraiana Rw5G012990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 33
AarI CACCTGC 1 cut(s) 902
Acc16I TGCGCA 1 cut(s) 739
Acc36I ACCTGC 1 cut(s) 902
AccB7I CCANNNNNTGG 1 cut(s) 581
AccI GTMKAC 1 cut(s) 1051
AciI CCGC 2 cut(s) 492, 981
AclI AACGTT 1 cut(s) 285
AclWI GGATC 1 cut(s) 821
AcuI CTGAAG 1 cut(s) 227
AfaI GTAC 3 cut(s) 248, 482, 764
AfiI CCNNNNNNNGG 1 cut(s) 581
AgsI TTSAA 2 cut(s) 199, 623
AjnI CCWGG 1 cut(s) 727
AluBI AGCT 2 cut(s) 860, 868
AluI AGCT 2 cut(s) 860, 868
Alw21I GWGCWC 1 cut(s) 91
Alw26I GTCTC 1 cut(s) 590
AlwI GGATC 1 cut(s) 821
AoxI GGCC 2 cut(s) 755, 773
AspLEI GCGC 2 cut(s) 740, 817
AspS9I GGNCC 3 cut(s) 238, 257, 1103
AsuC2I CCSGG 1 cut(s) 831
AsuHPI GGTGA 6 cut(s) 314, 354, 473, 836, 926, 1054
AsuNHI GCTAGC 2 cut(s) 856, 868
AvaII GGWCC 3 cut(s) 238, 257, 1103
BaeGI GKGCMC 1 cut(s) 16
BanII GRGCYC 1 cut(s) 224
BbsI GAAGAC 2 cut(s) 264, 404
Bbv12I GWGCWC 1 cut(s) 91
BccI CCATC 3 cut(s) 530, 833, 1008
BciT130I CCWGG 1 cut(s) 729
BclI TGATCA 2 cut(s) 418, 846
BcnI CCSGG 1 cut(s) 831
BcoDI GTCTC 1 cut(s) 590
BfaI CTAG 3 cut(s) 783, 857, 869
BfmI CTRYAG 1 cut(s) 631
BfoI RGCGCY 1 cut(s) 818
BfuAI ACCTGC 1 cut(s) 902
BmcAI AGTACT 2 cut(s) 482, 764
Bme1390I CCNGG 2 cut(s) 729, 831
Bme18I GGWCC 3 cut(s) 238, 257, 1103
BmgT120I GGNCC 3 cut(s) 238, 257, 1103
BmiI GGNNCC 5 cut(s) 182, 258, 314, 1079, 1105
BmrFI CCNGG 2 cut(s) 729, 831
BmrI ACTGGG 1 cut(s) 450
BmsI GCATC 3 cut(s) 97, 741, 1085
BmtI GCTAGC 2 cut(s) 860, 872
BmuI ACTGGG 1 cut(s) 450
BpiI GAAGAC 2 cut(s) 264, 404
BpuMI CCSGG 1 cut(s) 831
BsaI GGTCTC 1 cut(s) 590
BsaJI CCNNGG 3 cut(s) 82, 176, 487
Bsc4I CCNNNNNNNGG 1 cut(s) 581
Bse1I ACTGG 3 cut(s) 9, 430, 445
Bse3DI GCAATG 3 cut(s) 119, 728, 1073
BseBI CCWGG 1 cut(s) 729
BseDI CCNNGG 3 cut(s) 82, 176, 487
BseGI GGATG 2 cut(s) 109, 849
BseLI CCNNNNNNNGG 1 cut(s) 581
BseMI GCAATG 3 cut(s) 119, 728, 1073
BseMII CTCAG 1 cut(s) 780
BseNI ACTGG 3 cut(s) 9, 430, 445
BseSI GKGCMC 1 cut(s) 16
BsgI GTGCAG 1 cut(s) 912
BshFI GGCC 2 cut(s) 757, 775
BsiHKAI GWGCWC 1 cut(s) 91
BsiSI CCGG 1 cut(s) 830
BslFI GGGAC 2 cut(s) 457, 1089
BslI CCNNNNNNNGG 1 cut(s) 581
BsmAI GTCTC 1 cut(s) 590
BsmFI GGGAC 2 cut(s) 457, 1089
BsmI GAATGC 1 cut(s) 904
BsnI GGCC 2 cut(s) 757, 775
Bso31I GGTCTC 1 cut(s) 590
Bsp1286I GDGCHC 3 cut(s) 16, 91, 224
Bsp143I GATC 3 cut(s) 418, 826, 846
Bsp19I CCATGG 2 cut(s) 176, 487
BspACI CCGC 2 cut(s) 492, 981
BspANI GGCC 2 cut(s) 757, 775
BspCNI CTCAG 1 cut(s) 779
BspHI TCATGA 1 cut(s) 862
BspLI GGNNCC 5 cut(s) 182, 258, 314, 1079, 1105
BspMI ACCTGC 1 cut(s) 902
BspOI GCTAGC 2 cut(s) 860, 872
BspPI GGATC 1 cut(s) 821
BspQI GCTCTTC 2 cut(s) 177, 229
BspTNI GGTCTC 1 cut(s) 590
BsrDI GCAATG 3 cut(s) 119, 728, 1073
BsrI ACTGG 3 cut(s) 9, 430, 445
BssECI CCNNGG 3 cut(s) 82, 176, 487
BssMI GATC 3 cut(s) 418, 826, 846
BssT1I CCWWGG 3 cut(s) 82, 176, 487
Bst2UI CCWGG 1 cut(s) 729
Bst4CI ACNGT 3 cut(s) 403, 713, 1056
Bst6I CTCTTC 3 cut(s) 177, 229, 364
BstAPI GCANNNNNTGC 1 cut(s) 116
BstC8I GCNNGC 4 cut(s) 534, 773, 858, 870
BstDEI CTNAG 6 cut(s) 477, 500, 592, 759, 766, 1005
BstDSI CCRYGG 2 cut(s) 176, 487
BstF5I GGATG 2 cut(s) 109, 849
BstH2I RGCGCY 1 cut(s) 818
BstHHI GCGC 2 cut(s) 740, 817
BstKTI GATC 3 cut(s) 421, 829, 849
BstMAI GTCTC 1 cut(s) 590
BstMBI GATC 3 cut(s) 418, 826, 846
BstMWI GCNNNNNNNGC 2 cut(s) 116, 908
BstNI CCWGG 1 cut(s) 729
BstNSI RCATGY 1 cut(s) 536
BstSCI CCNGG 2 cut(s) 727, 829
BstSFI CTRYAG 1 cut(s) 631
BstSLI GKGCMC 1 cut(s) 16
BstV2I GAAGAC 2 cut(s) 264, 404
BstXI CCANNNNNNTGG 2 cut(s) 753, 1114
BsuRI GGCC 2 cut(s) 757, 775
BtgI CCRYGG 2 cut(s) 176, 487
BtsCI GGATG 2 cut(s) 109, 849
BtsI GCAGTG 1 cut(s) 645
BtsIMutI CAGTG 6 cut(s) 16, 414, 438, 645, 718, 856
BveI ACCTGC 1 cut(s) 902
Cac8I GCNNGC 4 cut(s) 534, 773, 858, 870
CciI TCATGA 1 cut(s) 862
CfoI GCGC 2 cut(s) 740, 817
Cfr13I GGNCC 3 cut(s) 238, 257, 1103
CseI GACGC 1 cut(s) 258
Csp6I GTAC 3 cut(s) 247, 481, 763
CspCI CAANNNNNGTGG 2 cut(s) 1055, 1090
CviAII CATG 7 cut(s) 177, 253, 488, 533, 753, 863, 1060
CviQI GTAC 3 cut(s) 247, 481, 763
DdeI CTNAG 6 cut(s) 477, 500, 592, 759, 766, 1005
DpnI GATC 3 cut(s) 420, 828, 848
DpnII GATC 3 cut(s) 418, 826, 846
Eam1104I CTCTTC 3 cut(s) 177, 229, 364
EarI CTCTTC 3 cut(s) 177, 229, 364
Eco130I CCWWGG 3 cut(s) 82, 176, 487
Eco24I GRGCYC 1 cut(s) 224
Eco31I GGTCTC 1 cut(s) 590
Eco47I GGWCC 3 cut(s) 238, 257, 1103
Eco57I CTGAAG 1 cut(s) 227
EcoO109I RGGNCCY 1 cut(s) 257
EcoRII CCWGG 1 cut(s) 727
EcoT14I CCWWGG 3 cut(s) 82, 176, 487
EcoT38I GRGCYC 1 cut(s) 224
ErhI CCWWGG 3 cut(s) 82, 176, 487
FaeI CATG 7 cut(s) 180, 256, 491, 536, 756, 866, 1063
FaqI GGGAC 2 cut(s) 457, 1089
FatI CATG 7 cut(s) 176, 252, 487, 532, 752, 862, 1059
FbaI TGATCA 2 cut(s) 418, 846
FblI GTMKAC 1 cut(s) 1051
FokI GGATG 2 cut(s) 116, 856
FriOI GRGCYC 1 cut(s) 224
FspBI CTAG 3 cut(s) 783, 857, 869
FspI TGCGCA 1 cut(s) 739
GlaI GCGC 2 cut(s) 739, 816
HaeII RGCGCY 1 cut(s) 818
HaeIII GGCC 2 cut(s) 757, 775
HapII CCGG 1 cut(s) 830
HgaI GACGC 1 cut(s) 258
HhaI GCGC 2 cut(s) 740, 817
Hin1II CATG 7 cut(s) 180, 256, 491, 536, 756, 866, 1063
Hin6I GCGC 2 cut(s) 738, 815
HinP1I GCGC 2 cut(s) 738, 815
HinfI GANTC 2 cut(s) 41, 473
HpaII CCGG 1 cut(s) 830
HphI GGTGA 6 cut(s) 314, 354, 473, 836, 926, 1054
Hpy166II GTNNAC 3 cut(s) 238, 289, 1052
Hpy188I TCNGA 4 cut(s) 229, 388, 555, 610
Hpy188III TCNNGA 2 cut(s) 623, 863
Hpy8I GTNNAC 3 cut(s) 238, 289, 1052
HpyAV CCTTC 3 cut(s) 72, 251, 387
HpyCH4III ACNGT 3 cut(s) 403, 713, 1056
HpyCH4IV ACGT 1 cut(s) 285
HpyF10VI GCNNNNNNNGC 2 cut(s) 116, 908
HpyF3I CTNAG 6 cut(s) 477, 500, 592, 759, 766, 1005
HpySE526I ACGT 1 cut(s) 285
Hsp92II CATG 7 cut(s) 180, 256, 491, 536, 756, 866, 1063
HspAI GCGC 2 cut(s) 738, 815
Ksp22I TGATCA 2 cut(s) 418, 846
Kzo9I GATC 3 cut(s) 418, 826, 846
LguI GCTCTTC 2 cut(s) 177, 229
LmnI GCTCC 2 cut(s) 86, 180
LweI GCATC 3 cut(s) 97, 741, 1085
MaeI CTAG 3 cut(s) 783, 857, 869
MaeII ACGT 1 cut(s) 285
MaeIII GTNAC 4 cut(s) 538, 682, 707, 797
MalI GATC 3 cut(s) 420, 828, 848
MboI GATC 3 cut(s) 418, 826, 846
MhlI GDGCHC 3 cut(s) 16, 91, 224
MluCI AATT 3 cut(s) 28, 125, 307
MlyI GAGTC 1 cut(s) 467
MmeI TCCRAC 1 cut(s) 692
MnlI CCTC 5 cut(s) 211, 399, 576, 788, 1040
MseI TTAA 1 cut(s) 615
MslI CAYNNNNRTG 1 cut(s) 751
MspI CCGG 1 cut(s) 830
MspR9I CCNGG 2 cut(s) 729, 831
Mva1269I GAATGC 1 cut(s) 904
MvaI CCWGG 1 cut(s) 729
MwoI GCNNNNNNNGC 2 cut(s) 116, 908
NciI CCSGG 1 cut(s) 831
NcoI CCATGG 2 cut(s) 176, 487
NdeII GATC 3 cut(s) 418, 826, 846
NheI GCTAGC 2 cut(s) 856, 868
NlaIII CATG 7 cut(s) 180, 256, 491, 536, 756, 866, 1063
NlaIV GGNNCC 5 cut(s) 182, 258, 314, 1079, 1105
NmuCI GTSAC 2 cut(s) 538, 682
NsbI TGCGCA 1 cut(s) 739
NspI RCATGY 1 cut(s) 536
PaeI GCATGC 1 cut(s) 536
PagI TCATGA 1 cut(s) 862
PaqCI CACCTGC 1 cut(s) 902
PciSI GCTCTTC 2 cut(s) 177, 229
PctI GAATGC 1 cut(s) 904
PfeI GAWTC 1 cut(s) 41
PflMI CCANNNNNTGG 1 cut(s) 581
PleI GAGTC 1 cut(s) 467
PpsI GAGTC 1 cut(s) 467
PpuMI RGGWCCY 1 cut(s) 257
PsiI TTATAA 1 cut(s) 33
Psp1406I AACGTT 1 cut(s) 285
Psp5II RGGWCCY 1 cut(s) 257
Psp6I CCWGG 1 cut(s) 727
PspGI CCWGG 1 cut(s) 727
PspN4I GGNNCC 5 cut(s) 182, 258, 314, 1079, 1105
PspPI GGNCC 3 cut(s) 238, 257, 1103
PspPPI RGGWCCY 1 cut(s) 257
RsaI GTAC 3 cut(s) 248, 482, 764
RsaNI GTAC 3 cut(s) 247, 481, 763
RseI CAYNNNNRTG 1 cut(s) 751
SapI GCTCTTC 2 cut(s) 177, 229
SaqAI TTAA 1 cut(s) 615
Sau3AI GATC 3 cut(s) 418, 826, 846
Sau96I GGNCC 3 cut(s) 238, 257, 1103
ScaI AGTACT 2 cut(s) 482, 764
SchI GAGTC 1 cut(s) 467
ScrFI CCNGG 2 cut(s) 729, 831
SduI GDGCHC 3 cut(s) 16, 91, 224
SfaNI GCATC 3 cut(s) 97, 741, 1085
SfcI CTRYAG 1 cut(s) 631
SinI GGWCC 3 cut(s) 238, 257, 1103
SmiMI CAYNNNNRTG 1 cut(s) 751
SphI GCATGC 1 cut(s) 536
Sse9I AATT 3 cut(s) 28, 125, 307
SsiI CCGC 2 cut(s) 492, 981
SspMI CTAG 3 cut(s) 783, 857, 869
StyD4I CCNGG 2 cut(s) 727, 829
StyI CCWWGG 3 cut(s) 82, 176, 487
TaaI ACNGT 3 cut(s) 403, 713, 1056
TaiI ACGT 1 cut(s) 288
TaqI TCGA 1 cut(s) 837
TasI AATT 3 cut(s) 28, 125, 307
TatI WGTACW 2 cut(s) 480, 762
TfiI GAWTC 1 cut(s) 41
Tru1I TTAA 1 cut(s) 615
Tru9I TTAA 1 cut(s) 615
TscAI CASTG 6 cut(s) 16, 421, 445, 645, 718, 856
TseFI GTSAC 2 cut(s) 538, 682
Tsp45I GTSAC 2 cut(s) 538, 682
TspDTI ATGAA 4 cut(s) 334, 534, 824, 1048
TspRI CASTG 6 cut(s) 16, 421, 445, 645, 718, 856
Van91I CCANNNNNTGG 1 cut(s) 581
VpaK11BI GGWCC 3 cut(s) 238, 257, 1103
XceI RCATGY 1 cut(s) 536
XmiI GTMKAC 1 cut(s) 1051
XspI CTAG 3 cut(s) 783, 857, 869
ZrmI AGTACT 2 cut(s) 482, 764
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.