RLG00000032498

Phosphate-induced protein 1 conserved region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0016520
Physical Location & Seq
Forward (+)
15866258 .. 15867409
1152 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032498

Sequence Viewer

Length: 1152 bp
ATGCAAACCAGTGCCCACCAGAAAGCAAATTATAAAGAAGAATCTCAACCCACTCCTCCTTTACCTTCACAGGTTTTTCTCTCTATAAAACCAAGTTCCACTTCCACCAAGGAGCACTGGAAAAACAGGATGAAGCAAAATCTGCATTGCAATTTCTTCTTCTTGCTTTCCTGCCTTTTTTTCTCTTCTACTTTGGCTCTTCCATGGAAGAGCCAAAGCAGAGAGTTCAACCAAGCCAAAAACTATGAGGGCTCTTCTGATTTTGTGGACCTTCAGTACCACATGGGTCCTGTCCTTGCTTCTTCTCCAATCAACGTTTACATTATTTGGTATGGGAATTGGAACCCAAATCACCAATCCACCATTAGAGATTTCATCTACTCACTCTCTTCACCAGCCCCTTACCCTTCTGTTTCTGATTGGTGGAAGACTGTGAGGCTCTACACTGATCAAACAGGCTCAAACATCACTGGGACTATTTCTCTTTCTGGTGAGTTCTATGACTCTAAGTACTCCCATGGCGGTTCTCTTAGCCGATTGTCAATGCAATCCATCATCAAGCATGCTGTCACTTCATCATACCCGAGAGCATTACCTCTCAATCCAAACAATGGTCTCTACTTAGTTCTAACATCTTCTGATGTTAAAGTTCAAGATTTCTGTAGAGCAGTGTGTGGTTTTCACTACTTCACATTTCCAACCATTGTTGGTGTCACTATGCCTTATGCTTGGGTTGGTTACAGTGGGAAGCAATGTCCTGGCATCTGCGCATACCCGTTTGCATGGCCCAAGTACTCAGGCAGGCCACCACCTAGCACAAATGGAGGTAACAACATAATGAAAGCGCCGAATGGCAATCCGGGTGTTGATGGGATGATCAGTGTGCTAGCTCATGAGCTAGCAGAAGTGTCAAGCAACCCACTTGTGAATGCTTGGTATGCCGGTGATGACCCAACTGCACCAACTGAAATAGCAGATTTGTGTATGGGGGTTTATGGGAGTGGTGGGGGTGGTGGGTATGTTGGGGTAGTGTCTAAGGACAGATGGGGAAATGGGTATAATGTGAATGGGGTGAAAGGTAGAAAGTTCATGGTGCAATGGGTGTGGAACCCTGTGAAAAGAAGATGCTTTGGTCCCAATGCTATGGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Phi_1

Protein Analysis

384

Amino Acids

42.43

Weight (kDa)

8.95

Isoelectric Point (pI)

40.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Phi_1 PF04674 91 - 378 1.1e-99 Phosphate-induced protein 1 conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016520)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G35150
fragaria_vesca FvH4_3g12280
malus_domestica MD10G1232600.v1.1
prunus_persica Prupe.4G111900_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0020091
rosa_laevigata RLG00000032498
rosa_multiflora Rmu_sc0009586.1_g000003
rosa_roxburghii Rroxscaffold_1G00058110
rosa_rugosa Rorug05G0056800
rosa_samantha Rh5AG147000 Rh5BG146400 Rh5CG158100 Rh5DG146000
rosa_wichuraiana Rw5G012990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 33
Acc16I TGCGCA 1 cut(s) 769
AccB7I CCANNNNNTGG 1 cut(s) 611
AciI CCGC 1 cut(s) 522
AclI AACGTT 1 cut(s) 315
AcuI CTGAAG 1 cut(s) 257
AfaI GTAC 3 cut(s) 278, 512, 794
AfiI CCNNNNNNNGG 1 cut(s) 611
AgsI TTSAA 2 cut(s) 229, 653
AjnI CCWGG 1 cut(s) 757
AjuI GAANNNNNNNTTGG 2 cut(s) 85, 117
AluBI AGCT 2 cut(s) 890, 898
AluI AGCT 2 cut(s) 890, 898
Alw21I GWGCWC 1 cut(s) 117
Alw26I GTCTC 1 cut(s) 620
Ama87I CYCGRG 1 cut(s) 583
AoxI GGCC 2 cut(s) 785, 803
AspLEI GCGC 2 cut(s) 770, 847
AspS9I GGNCC 4 cut(s) 268, 287, 786, 1133
AsuC2I CCSGG 1 cut(s) 861
AsuHPI GGTGA 5 cut(s) 344, 384, 503, 956, 1084
AsuNHI GCTAGC 2 cut(s) 886, 898
AvaI CYCGRG 1 cut(s) 583
AvaII GGWCC 3 cut(s) 268, 287, 1133
BaeGI GKGCMC 1 cut(s) 16
BanII GRGCYC 1 cut(s) 254
BbsI GAAGAC 1 cut(s) 434
Bbv12I GWGCWC 1 cut(s) 117
BccI CCATC 3 cut(s) 560, 863, 1038
BciT130I CCWGG 1 cut(s) 759
BclI TGATCA 2 cut(s) 448, 876
BcnI CCSGG 1 cut(s) 861
BcoDI GTCTC 1 cut(s) 620
BfaI CTAG 3 cut(s) 813, 887, 899
BfmI CTRYAG 1 cut(s) 661
BfoI RGCGCY 1 cut(s) 848
BmcAI AGTACT 2 cut(s) 512, 794
Bme1390I CCNGG 2 cut(s) 759, 861
Bme18I GGWCC 3 cut(s) 268, 287, 1133
BmeT110I CYCGRG 1 cut(s) 583
BmgT120I GGNCC 4 cut(s) 268, 287, 786, 1133
BmiI GGNNCC 4 cut(s) 288, 344, 1109, 1135
BmrFI CCNGG 2 cut(s) 759, 861
BmrI ACTGGG 1 cut(s) 480
BmsI GCATC 2 cut(s) 771, 1115
BmtI GCTAGC 2 cut(s) 890, 902
BmuI ACTGGG 1 cut(s) 480
BpiI GAAGAC 1 cut(s) 434
BpuMI CCSGG 1 cut(s) 861
BsaI GGTCTC 1 cut(s) 620
BsaJI CCNNGG 3 cut(s) 108, 203, 517
Bsc4I CCNNNNNNNGG 1 cut(s) 611
Bse118I RCCGGY 1 cut(s) 941
Bse1I ACTGG 3 cut(s) 9, 122, 475
Bse3DI GCAATG 3 cut(s) 145, 758, 1103
BseBI CCWGG 1 cut(s) 759
BseDI CCNNGG 3 cut(s) 108, 203, 517
BseGI GGATG 2 cut(s) 135, 879
BseLI CCNNNNNNNGG 1 cut(s) 611
BseMI GCAATG 3 cut(s) 145, 758, 1103
BseMII CTCAG 1 cut(s) 810
BseNI ACTGG 3 cut(s) 9, 122, 475
BseRI GAGGAG 1 cut(s) 45
BseSI GKGCMC 1 cut(s) 16
BsgI GTGCAG 1 cut(s) 942
BshFI GGCC 2 cut(s) 787, 805
BsiHKAI GWGCWC 1 cut(s) 117
BsiHKCI CYCGRG 1 cut(s) 583
BsiSI CCGG 2 cut(s) 860, 942
BslFI GGGAC 2 cut(s) 487, 1119
BslI CCNNNNNNNGG 1 cut(s) 611
BsmAI GTCTC 1 cut(s) 620
BsmFI GGGAC 2 cut(s) 487, 1119
BsmI GAATGC 1 cut(s) 934
BsnI GGCC 2 cut(s) 787, 805
Bso31I GGTCTC 1 cut(s) 620
BsoBI CYCGRG 1 cut(s) 583
Bsp1286I GDGCHC 3 cut(s) 16, 117, 254
Bsp143I GATC 2 cut(s) 448, 876
Bsp19I CCATGG 2 cut(s) 203, 517
BspACI CCGC 1 cut(s) 522
BspANI GGCC 2 cut(s) 787, 805
BspCNI CTCAG 1 cut(s) 809
BspHI TCATGA 1 cut(s) 892
BspLI GGNNCC 4 cut(s) 288, 344, 1109, 1135
BspOI GCTAGC 2 cut(s) 890, 902
BspQI GCTCTTC 3 cut(s) 203, 204, 259
BspTNI GGTCTC 1 cut(s) 620
BsrDI GCAATG 3 cut(s) 145, 758, 1103
BsrFI RCCGGY 1 cut(s) 941
BsrI ACTGG 3 cut(s) 9, 122, 475
BssAI RCCGGY 1 cut(s) 941
BssECI CCNNGG 3 cut(s) 108, 203, 517
BssMI GATC 2 cut(s) 448, 876
BssT1I CCWWGG 3 cut(s) 108, 203, 517
Bst2UI CCWGG 1 cut(s) 759
Bst4CI ACNGT 2 cut(s) 433, 743
Bst6I CTCTTC 5 cut(s) 190, 203, 204, 259, 394
BstAPI GCANNNNNTGC 1 cut(s) 142
BstC8I GCNNGC 4 cut(s) 564, 803, 888, 900
BstDEI CTNAG 5 cut(s) 507, 530, 622, 796, 1035
BstDSI CCRYGG 2 cut(s) 203, 517
BstF5I GGATG 2 cut(s) 135, 879
BstH2I RGCGCY 1 cut(s) 848
BstHHI GCGC 2 cut(s) 770, 847
BstKTI GATC 2 cut(s) 451, 879
BstMAI GTCTC 1 cut(s) 620
BstMBI GATC 2 cut(s) 448, 876
BstMWI GCNNNNNNNGC 2 cut(s) 142, 938
BstNI CCWGG 1 cut(s) 759
BstNSI RCATGY 1 cut(s) 566
BstSCI CCNGG 2 cut(s) 757, 859
BstSFI CTRYAG 1 cut(s) 661
BstSLI GKGCMC 1 cut(s) 16
BstV2I GAAGAC 1 cut(s) 434
BstXI CCANNNNNNTGG 1 cut(s) 1144
BsuRI GGCC 2 cut(s) 787, 805
BtgI CCRYGG 2 cut(s) 203, 517
BtsCI GGATG 2 cut(s) 135, 879
BtsI GCAGTG 1 cut(s) 675
BtsIMutI CAGTG 7 cut(s) 16, 115, 444, 468, 675, 748, 886
Cac8I GCNNGC 4 cut(s) 564, 803, 888, 900
CciI TCATGA 1 cut(s) 892
CfoI GCGC 2 cut(s) 770, 847
Cfr10I RCCGGY 1 cut(s) 941
Cfr13I GGNCC 4 cut(s) 268, 287, 786, 1133
Csp6I GTAC 3 cut(s) 277, 511, 793
CspCI CAANNNNNGTGG 2 cut(s) 1085, 1120
CviAII CATG 7 cut(s) 204, 283, 518, 563, 783, 893, 1090
CviQI GTAC 3 cut(s) 277, 511, 793
DdeI CTNAG 5 cut(s) 507, 530, 622, 796, 1035
DpnI GATC 2 cut(s) 450, 878
DpnII GATC 2 cut(s) 448, 876
Eam1104I CTCTTC 5 cut(s) 190, 203, 204, 259, 394
EarI CTCTTC 5 cut(s) 190, 203, 204, 259, 394
Eco130I CCWWGG 3 cut(s) 108, 203, 517
Eco24I GRGCYC 1 cut(s) 254
Eco31I GGTCTC 1 cut(s) 620
Eco47I GGWCC 3 cut(s) 268, 287, 1133
Eco57I CTGAAG 1 cut(s) 257
Eco88I CYCGRG 1 cut(s) 583
EcoO109I RGGNCCY 1 cut(s) 287
EcoRII CCWGG 1 cut(s) 757
EcoT14I CCWWGG 3 cut(s) 108, 203, 517
EcoT38I GRGCYC 1 cut(s) 254
ErhI CCWWGG 3 cut(s) 108, 203, 517
FaeI CATG 7 cut(s) 207, 286, 521, 566, 786, 896, 1093
FalI AAGNNNNNCTT 2 cut(s) 85, 117
FaqI GGGAC 2 cut(s) 487, 1119
FatI CATG 7 cut(s) 203, 282, 517, 562, 782, 892, 1089
FbaI TGATCA 2 cut(s) 448, 876
FokI GGATG 2 cut(s) 142, 886
FriOI GRGCYC 1 cut(s) 254
FspBI CTAG 3 cut(s) 813, 887, 899
FspI TGCGCA 1 cut(s) 769
GlaI GCGC 2 cut(s) 769, 846
HaeII RGCGCY 1 cut(s) 848
HaeIII GGCC 2 cut(s) 787, 805
HapII CCGG 2 cut(s) 860, 942
HhaI GCGC 2 cut(s) 770, 847
Hin1II CATG 7 cut(s) 207, 286, 521, 566, 786, 896, 1093
Hin6I GCGC 2 cut(s) 768, 845
HinP1I GCGC 2 cut(s) 768, 845
HinfI GANTC 2 cut(s) 41, 503
HpaII CCGG 2 cut(s) 860, 942
HphI GGTGA 5 cut(s) 344, 384, 503, 956, 1084
Hpy166II GTNNAC 2 cut(s) 268, 319
Hpy188I TCNGA 3 cut(s) 259, 418, 640
Hpy188III TCNNGA 2 cut(s) 653, 893
Hpy8I GTNNAC 2 cut(s) 268, 319
HpyAV CCTTC 3 cut(s) 75, 281, 417
HpyCH4III ACNGT 2 cut(s) 433, 743
HpyCH4IV ACGT 1 cut(s) 315
HpyCH4V TGCA 7 cut(s) 4, 145, 150, 547, 782, 959, 1096
HpyF10VI GCNNNNNNNGC 2 cut(s) 142, 938
HpyF3I CTNAG 5 cut(s) 507, 530, 622, 796, 1035
HpySE526I ACGT 1 cut(s) 315
Hsp92II CATG 7 cut(s) 207, 286, 521, 566, 786, 896, 1093
HspAI GCGC 2 cut(s) 768, 845
Ksp22I TGATCA 2 cut(s) 448, 876
Kzo9I GATC 2 cut(s) 448, 876
LguI GCTCTTC 3 cut(s) 203, 204, 259
LmnI GCTCC 1 cut(s) 112
LweI GCATC 2 cut(s) 771, 1115
MaeI CTAG 3 cut(s) 813, 887, 899
MaeII ACGT 1 cut(s) 315
MaeIII GTNAC 4 cut(s) 568, 712, 737, 827
MalI GATC 2 cut(s) 450, 878
MboI GATC 2 cut(s) 448, 876
MhlI GDGCHC 3 cut(s) 16, 117, 254
MluCI AATT 3 cut(s) 28, 151, 337
MlyI GAGTC 1 cut(s) 497
MmeI TCCRAC 1 cut(s) 722
MnlI CCTC 5 cut(s) 66, 241, 429, 606, 818
MseI TTAA 1 cut(s) 645
MspI CCGG 2 cut(s) 860, 942
MspR9I CCNGG 2 cut(s) 759, 861
Mva1269I GAATGC 1 cut(s) 934
MvaI CCWGG 1 cut(s) 759
MwoI GCNNNNNNNGC 2 cut(s) 142, 938
NciI CCSGG 1 cut(s) 861
NcoI CCATGG 2 cut(s) 203, 517
NdeII GATC 2 cut(s) 448, 876
NheI GCTAGC 2 cut(s) 886, 898
NlaIII CATG 7 cut(s) 207, 286, 521, 566, 786, 896, 1093
NlaIV GGNNCC 4 cut(s) 288, 344, 1109, 1135
NmuCI GTSAC 2 cut(s) 568, 712
NsbI TGCGCA 1 cut(s) 769
NspI RCATGY 1 cut(s) 566
PaeI GCATGC 1 cut(s) 566
PagI TCATGA 1 cut(s) 892
PciSI GCTCTTC 3 cut(s) 203, 204, 259
PctI GAATGC 1 cut(s) 934
PfeI GAWTC 1 cut(s) 41
PflMI CCANNNNNTGG 1 cut(s) 611
PleI GAGTC 1 cut(s) 497
PpsI GAGTC 1 cut(s) 497
PpuMI RGGWCCY 1 cut(s) 287
PsiI TTATAA 1 cut(s) 33
Psp1406I AACGTT 1 cut(s) 315
Psp5II RGGWCCY 1 cut(s) 287
Psp6I CCWGG 1 cut(s) 757
PspGI CCWGG 1 cut(s) 757
PspN4I GGNNCC 4 cut(s) 288, 344, 1109, 1135
PspPI GGNCC 4 cut(s) 268, 287, 786, 1133
PspPPI RGGWCCY 1 cut(s) 287
RsaI GTAC 3 cut(s) 278, 512, 794
RsaNI GTAC 3 cut(s) 277, 511, 793
SapI GCTCTTC 3 cut(s) 203, 204, 259
SaqAI TTAA 1 cut(s) 645
Sau3AI GATC 2 cut(s) 448, 876
Sau96I GGNCC 4 cut(s) 268, 287, 786, 1133
ScaI AGTACT 2 cut(s) 512, 794
SchI GAGTC 1 cut(s) 497
ScrFI CCNGG 2 cut(s) 759, 861
SduI GDGCHC 3 cut(s) 16, 117, 254
SfaNI GCATC 2 cut(s) 771, 1115
SfcI CTRYAG 1 cut(s) 661
SinI GGWCC 3 cut(s) 268, 287, 1133
SphI GCATGC 1 cut(s) 566
Sse9I AATT 3 cut(s) 28, 151, 337
SsiI CCGC 1 cut(s) 522
SspMI CTAG 3 cut(s) 813, 887, 899
StyD4I CCNGG 2 cut(s) 757, 859
StyI CCWWGG 3 cut(s) 108, 203, 517
TaaI ACNGT 2 cut(s) 433, 743
TaiI ACGT 1 cut(s) 318
TasI AATT 3 cut(s) 28, 151, 337
TatI WGTACW 2 cut(s) 510, 792
TfiI GAWTC 1 cut(s) 41
Tru1I TTAA 1 cut(s) 645
Tru9I TTAA 1 cut(s) 645
TscAI CASTG 7 cut(s) 16, 122, 451, 475, 675, 748, 886
TseFI GTSAC 2 cut(s) 568, 712
Tsp45I GTSAC 2 cut(s) 568, 712
TspDTI ATGAA 5 cut(s) 146, 364, 564, 854, 1078
TspRI CASTG 7 cut(s) 16, 122, 451, 475, 675, 748, 886
Van91I CCANNNNNTGG 1 cut(s) 611
VpaK11BI GGWCC 3 cut(s) 268, 287, 1133
XceI RCATGY 1 cut(s) 566
XspI CTAG 3 cut(s) 813, 887, 899
ZrmI AGTACT 2 cut(s) 512, 794
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.