Rw5G012990

Phosphate-induced protein 1 conserved region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0016520
Physical Location & Seq
Forward (+)
15343297 .. 15344313
1017 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G012990.1

Sequence Viewer

Length: 1017 bp
ATGCAAATTCTGCATTGCAATTTCTTCTTCTTGCTTTCCTGCATTTTTTTCTCTACTACTTTGGCTCTTCCATGGAGCCAAAGCAGACAGTTCAACCAAGCCAAAAACTATGAGGGCTCTTCTGATTTTGTGGACCTTCAGTACCACATGGGTCCTGTCCTTGCTTCTTCTCCAATCAACGTTTACATTATTTGGTATGGGAATTGGAACCCAACTCACCAATCCACCATTAGAGATTTCATCTACTCACTCTCTTCACCAGCCCCTTACCCTTCTGTTTCTGATTGGTGGAAGACTGTGAGGCTCTACACTGATCAAACTGGCTCAAACATCACTGGGACTATTTCTCTTTCTGGTGAGTTCTATGACTCTAAGTACTCCCATGGCGGTTCTCTTAGCCGATTGTCAATGCAATCCATCATCAAGCATGCTGTCACTTCATCATATCCGAGAGCATTACCTCTCAATCCAAACAATGGTCTCTACTTAGTTCTAACATCTTCTGATGTTAAAGTTCAAGATTTCTGTAGAGCAGTGTGTGGTTTTCACTACTTCACATTTCCAACCATTGTTGGTGTCACTATGCCTTATGCTTGGGTTGGTTACAGTGGGAAGCAATGTCCTGGCATCTGCGCATACCCATTTGCATGGCCCAAGTACTCAGGCAGGCCACCACCTAACACAAATGGAGGTAACAACATAATGAAAGCACCGAATGGCGATCCGGGTGTTGATGGGATGATCAGTGTGCTAGCTCATGAGCTAGCAGAAGTGTCAAGCAACCCACTTGTGAATGCTTGGTATGCAGGTGATGACCCAACTGCACCAACTGAAATAGCAGATTTGTGTATGGGGGTTTATGGGAGTGGTGGGGGTGGTGGGTATGTTGGGGTAGTGTCTAAGGACAGATGGGGAAATGGGTATAATGTGAATGGGGTGAAAGGTAGAAAGTTCATGGTGCAATGGGTGTGGAACCCTGTGAAAAGAAGATGCTTTGGTCCCAATGCTATGGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Phi_1

Protein Analysis

338

Amino Acids

37.29

Weight (kDa)

8.33

Isoelectric Point (pI)

38.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Phi_1 PF04674 46 - 333 2.4e-100 Phosphate-induced protein 1 conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016520)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G35150
fragaria_vesca FvH4_3g12280
malus_domestica MD10G1232600.v1.1
prunus_persica Prupe.4G111900_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0020091
rosa_laevigata RLG00000032498
rosa_multiflora Rmu_sc0009586.1_g000003
rosa_roxburghii Rroxscaffold_1G00058110
rosa_rugosa Rorug05G0056800
rosa_samantha Rh5AG147000 Rh5BG146400 Rh5CG158100 Rh5DG146000
rosa_wichuraiana Rw5G012990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 797
Acc16I TGCGCA 1 cut(s) 634
Acc36I ACCTGC 1 cut(s) 797
AccB7I CCANNNNNTGG 1 cut(s) 476
AciI CCGC 1 cut(s) 387
AclI AACGTT 1 cut(s) 180
AclWI GGATC 1 cut(s) 716
AcsI RAATTY 1 cut(s) 6
AcuI CTGAAG 1 cut(s) 122
AfaI GTAC 3 cut(s) 143, 377, 659
AfiI CCNNNNNNNGG 1 cut(s) 476
AgsI TTSAA 2 cut(s) 94, 518
AjnI CCWGG 1 cut(s) 622
AluBI AGCT 2 cut(s) 755, 763
AluI AGCT 2 cut(s) 755, 763
Alw26I GTCTC 1 cut(s) 485
AlwI GGATC 1 cut(s) 716
AoxI GGCC 2 cut(s) 650, 668
ApoI RAATTY 1 cut(s) 6
AspLEI GCGC 1 cut(s) 635
AspS9I GGNCC 4 cut(s) 133, 152, 651, 998
AsuC2I CCSGG 1 cut(s) 726
AsuHPI GGTGA 5 cut(s) 209, 249, 368, 821, 949
AsuNHI GCTAGC 2 cut(s) 751, 763
AvaII GGWCC 3 cut(s) 133, 152, 998
BanII GRGCYC 1 cut(s) 119
BbsI GAAGAC 1 cut(s) 299
BccI CCATC 3 cut(s) 425, 728, 903
BciT130I CCWGG 1 cut(s) 624
BclI TGATCA 2 cut(s) 313, 741
BcnI CCSGG 1 cut(s) 726
BcoDI GTCTC 1 cut(s) 485
BfaI CTAG 2 cut(s) 752, 764
BfmI CTRYAG 1 cut(s) 526
BfuAI ACCTGC 1 cut(s) 797
BmcAI AGTACT 2 cut(s) 377, 659
Bme1390I CCNGG 2 cut(s) 624, 726
Bme18I GGWCC 3 cut(s) 133, 152, 998
BmgT120I GGNCC 4 cut(s) 133, 152, 651, 998
BmiI GGNNCC 5 cut(s) 77, 153, 209, 974, 1000
BmrFI CCNGG 2 cut(s) 624, 726
BmrI ACTGGG 1 cut(s) 345
BmsI GCATC 2 cut(s) 636, 980
BmtI GCTAGC 2 cut(s) 755, 767
BmuI ACTGGG 1 cut(s) 345
BpiI GAAGAC 1 cut(s) 299
BpuMI CCSGG 1 cut(s) 726
BsaI GGTCTC 1 cut(s) 485
BsaJI CCNNGG 2 cut(s) 71, 382
Bsc4I CCNNNNNNNGG 1 cut(s) 476
Bse1I ACTGG 2 cut(s) 325, 340
Bse3DI GCAATG 3 cut(s) 13, 623, 968
BseBI CCWGG 1 cut(s) 624
BseDI CCNNGG 2 cut(s) 71, 382
BseGI GGATG 1 cut(s) 744
BseLI CCNNNNNNNGG 1 cut(s) 476
BseMI GCAATG 3 cut(s) 13, 623, 968
BseMII CTCAG 1 cut(s) 675
BseNI ACTGG 2 cut(s) 325, 340
BsgI GTGCAG 1 cut(s) 807
BshFI GGCC 2 cut(s) 652, 670
BsiSI CCGG 1 cut(s) 725
BslFI GGGAC 2 cut(s) 352, 984
BslI CCNNNNNNNGG 1 cut(s) 476
BsmAI GTCTC 1 cut(s) 485
BsmFI GGGAC 2 cut(s) 352, 984
BsmI GAATGC 1 cut(s) 799
BsnI GGCC 2 cut(s) 652, 670
Bso31I GGTCTC 1 cut(s) 485
Bsp1286I GDGCHC 1 cut(s) 119
Bsp143I GATC 3 cut(s) 313, 721, 741
Bsp19I CCATGG 2 cut(s) 71, 382
BspACI CCGC 1 cut(s) 387
BspANI GGCC 2 cut(s) 652, 670
BspCNI CTCAG 1 cut(s) 674
BspHI TCATGA 1 cut(s) 757
BspLI GGNNCC 5 cut(s) 77, 153, 209, 974, 1000
BspMI ACCTGC 1 cut(s) 797
BspOI GCTAGC 2 cut(s) 755, 767
BspPI GGATC 1 cut(s) 716
BspQI GCTCTTC 2 cut(s) 72, 124
BspTNI GGTCTC 1 cut(s) 485
BsrDI GCAATG 3 cut(s) 13, 623, 968
BsrI ACTGG 2 cut(s) 325, 340
BssECI CCNNGG 2 cut(s) 71, 382
BssMI GATC 3 cut(s) 313, 721, 741
BssT1I CCWWGG 2 cut(s) 71, 382
Bst2UI CCWGG 1 cut(s) 624
Bst4CI ACNGT 3 cut(s) 90, 298, 608
Bst6I CTCTTC 3 cut(s) 72, 124, 259
BstAPI GCANNNNNTGC 1 cut(s) 10
BstC8I GCNNGC 4 cut(s) 429, 668, 753, 765
BstDEI CTNAG 5 cut(s) 372, 395, 487, 661, 900
BstDSI CCRYGG 2 cut(s) 71, 382
BstF5I GGATG 1 cut(s) 744
BstHHI GCGC 1 cut(s) 635
BstKTI GATC 3 cut(s) 316, 724, 744
BstMAI GTCTC 1 cut(s) 485
BstMBI GATC 3 cut(s) 313, 721, 741
BstMWI GCNNNNNNNGC 2 cut(s) 10, 803
BstNI CCWGG 1 cut(s) 624
BstNSI RCATGY 1 cut(s) 431
BstSCI CCNGG 2 cut(s) 622, 724
BstSFI CTRYAG 1 cut(s) 526
BstV2I GAAGAC 1 cut(s) 299
BstXI CCANNNNNNTGG 2 cut(s) 648, 1009
BsuRI GGCC 2 cut(s) 652, 670
BtgI CCRYGG 2 cut(s) 71, 382
BtsCI GGATG 1 cut(s) 744
BtsI GCAGTG 1 cut(s) 540
BtsIMutI CAGTG 5 cut(s) 309, 333, 540, 613, 751
BveI ACCTGC 1 cut(s) 797
Cac8I GCNNGC 4 cut(s) 429, 668, 753, 765
CciI TCATGA 1 cut(s) 757
CfoI GCGC 1 cut(s) 635
Cfr13I GGNCC 4 cut(s) 133, 152, 651, 998
Csp6I GTAC 3 cut(s) 142, 376, 658
CspCI CAANNNNNGTGG 2 cut(s) 950, 985
CviAII CATG 7 cut(s) 72, 148, 383, 428, 648, 758, 955
CviQI GTAC 3 cut(s) 142, 376, 658
DdeI CTNAG 5 cut(s) 372, 395, 487, 661, 900
DpnI GATC 3 cut(s) 315, 723, 743
DpnII GATC 3 cut(s) 313, 721, 741
Eam1104I CTCTTC 3 cut(s) 72, 124, 259
EarI CTCTTC 3 cut(s) 72, 124, 259
Eco130I CCWWGG 2 cut(s) 71, 382
Eco24I GRGCYC 1 cut(s) 119
Eco31I GGTCTC 1 cut(s) 485
Eco47I GGWCC 3 cut(s) 133, 152, 998
Eco57I CTGAAG 1 cut(s) 122
EcoO109I RGGNCCY 1 cut(s) 152
EcoRII CCWGG 1 cut(s) 622
EcoT14I CCWWGG 2 cut(s) 71, 382
EcoT38I GRGCYC 1 cut(s) 119
ErhI CCWWGG 2 cut(s) 71, 382
FaeI CATG 7 cut(s) 75, 151, 386, 431, 651, 761, 958
FaqI GGGAC 2 cut(s) 352, 984
FatI CATG 7 cut(s) 71, 147, 382, 427, 647, 757, 954
FbaI TGATCA 2 cut(s) 313, 741
FokI GGATG 1 cut(s) 751
FriOI GRGCYC 1 cut(s) 119
FspBI CTAG 2 cut(s) 752, 764
FspI TGCGCA 1 cut(s) 634
GlaI GCGC 1 cut(s) 634
HaeIII GGCC 2 cut(s) 652, 670
HapII CCGG 1 cut(s) 725
HhaI GCGC 1 cut(s) 635
Hin1II CATG 7 cut(s) 75, 151, 386, 431, 651, 761, 958
Hin6I GCGC 1 cut(s) 633
HinP1I GCGC 1 cut(s) 633
HinfI GANTC 1 cut(s) 368
HpaII CCGG 1 cut(s) 725
HphI GGTGA 5 cut(s) 209, 249, 368, 821, 949
Hpy166II GTNNAC 2 cut(s) 133, 184
Hpy188I TCNGA 4 cut(s) 124, 283, 450, 505
Hpy188III TCNNGA 2 cut(s) 518, 758
Hpy8I GTNNAC 2 cut(s) 133, 184
HpyAV CCTTC 2 cut(s) 146, 282
HpyCH4III ACNGT 3 cut(s) 90, 298, 608
HpyCH4IV ACGT 1 cut(s) 180
HpyCH4V TGCA 9 cut(s) 4, 13, 18, 42, 412, 647, 806, 824, 961
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 803
HpyF3I CTNAG 5 cut(s) 372, 395, 487, 661, 900
HpySE526I ACGT 1 cut(s) 180
Hsp92II CATG 7 cut(s) 75, 151, 386, 431, 651, 761, 958
HspAI GCGC 1 cut(s) 633
Ksp22I TGATCA 2 cut(s) 313, 741
Kzo9I GATC 3 cut(s) 313, 721, 741
LguI GCTCTTC 2 cut(s) 72, 124
LmnI GCTCC 1 cut(s) 75
LweI GCATC 2 cut(s) 636, 980
MaeI CTAG 2 cut(s) 752, 764
MaeII ACGT 1 cut(s) 180
MaeIII GTNAC 4 cut(s) 433, 577, 602, 692
MalI GATC 3 cut(s) 315, 723, 743
MboI GATC 3 cut(s) 313, 721, 741
MboII GAAGA 9 cut(s) 16, 19, 59, 111, 159, 246, 304, 492, 999
MhlI GDGCHC 1 cut(s) 119
MluCI AATT 3 cut(s) 6, 19, 202
MlyI GAGTC 1 cut(s) 362
MmeI TCCRAC 1 cut(s) 587
MnlI CCTC 4 cut(s) 106, 294, 471, 683
MseI TTAA 1 cut(s) 510
MslI CAYNNNNRTG 1 cut(s) 646
MspI CCGG 1 cut(s) 725
MspR9I CCNGG 2 cut(s) 624, 726
Mva1269I GAATGC 1 cut(s) 799
MvaI CCWGG 1 cut(s) 624
MwoI GCNNNNNNNGC 2 cut(s) 10, 803
NciI CCSGG 1 cut(s) 726
NcoI CCATGG 2 cut(s) 71, 382
NdeII GATC 3 cut(s) 313, 721, 741
NheI GCTAGC 2 cut(s) 751, 763
NlaIII CATG 7 cut(s) 75, 151, 386, 431, 651, 761, 958
NlaIV GGNNCC 5 cut(s) 77, 153, 209, 974, 1000
NmuCI GTSAC 2 cut(s) 433, 577
NsbI TGCGCA 1 cut(s) 634
NspI RCATGY 1 cut(s) 431
PaeI GCATGC 1 cut(s) 431
PagI TCATGA 1 cut(s) 757
PaqCI CACCTGC 1 cut(s) 797
PciSI GCTCTTC 2 cut(s) 72, 124
PctI GAATGC 1 cut(s) 799
PflMI CCANNNNNTGG 1 cut(s) 476
PleI GAGTC 1 cut(s) 362
PpsI GAGTC 1 cut(s) 362
PpuMI RGGWCCY 1 cut(s) 152
Psp1406I AACGTT 1 cut(s) 180
Psp5II RGGWCCY 1 cut(s) 152
Psp6I CCWGG 1 cut(s) 622
PspGI CCWGG 1 cut(s) 622
PspN4I GGNNCC 5 cut(s) 77, 153, 209, 974, 1000
PspPI GGNCC 4 cut(s) 133, 152, 651, 998
PspPPI RGGWCCY 1 cut(s) 152
RsaI GTAC 3 cut(s) 143, 377, 659
RsaNI GTAC 3 cut(s) 142, 376, 658
RseI CAYNNNNRTG 1 cut(s) 646
SapI GCTCTTC 2 cut(s) 72, 124
SaqAI TTAA 1 cut(s) 510
Sau3AI GATC 3 cut(s) 313, 721, 741
Sau96I GGNCC 4 cut(s) 133, 152, 651, 998
ScaI AGTACT 2 cut(s) 377, 659
SchI GAGTC 1 cut(s) 362
ScrFI CCNGG 2 cut(s) 624, 726
SduI GDGCHC 1 cut(s) 119
SetI ASST 9 cut(s) 138, 183, 463, 679, 694, 757, 765, 811, 946
SfaNI GCATC 2 cut(s) 636, 980
SfcI CTRYAG 1 cut(s) 526
SinI GGWCC 3 cut(s) 133, 152, 998
SmiMI CAYNNNNRTG 1 cut(s) 646
SphI GCATGC 1 cut(s) 431
Sse9I AATT 3 cut(s) 6, 19, 202
SsiI CCGC 1 cut(s) 387
SspMI CTAG 2 cut(s) 752, 764
StyD4I CCNGG 2 cut(s) 622, 724
StyI CCWWGG 2 cut(s) 71, 382
TaaI ACNGT 3 cut(s) 90, 298, 608
TaiI ACGT 1 cut(s) 183
TasI AATT 3 cut(s) 6, 19, 202
TatI WGTACW 2 cut(s) 375, 657
Tru1I TTAA 1 cut(s) 510
Tru9I TTAA 1 cut(s) 510
TscAI CASTG 5 cut(s) 316, 340, 540, 613, 751
TseFI GTSAC 2 cut(s) 433, 577
Tsp45I GTSAC 2 cut(s) 433, 577
TspDTI ATGAA 4 cut(s) 229, 429, 719, 943
TspRI CASTG 5 cut(s) 316, 340, 540, 613, 751
Van91I CCANNNNNTGG 1 cut(s) 476
VpaK11BI GGWCC 3 cut(s) 133, 152, 998
XapI RAATTY 1 cut(s) 6
XceI RCATGY 1 cut(s) 431
XspI CTAG 2 cut(s) 752, 764
ZrmI AGTACT 2 cut(s) 377, 659
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.