MD10G1232600.v1.1

Phosphate-induced protein 1 conserved region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0016520
Physical Location & Seq
Reverse (-)
32897080 .. 32898139
1060 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1232600.v1.1.491

Sequence Viewer

Length: 1017 bp
ATGCAAAATCTGCAACTTTGCAGTTTCTTCTTCTTCTTCTCTTCATTTTTTTTCTTTACAATTCTGGCTCAATATTCATGGAGCCAGAACACACAATTCAACCAAGCCAAAAACTATGAGGGTTCATCTGATCTGGTGGACCTTCAGTACCATATGGGTCCTGTCCTTGCTTCTCCCATCAACCTTTATGTTATATGGTATGGCCACTGGAACCCTACTCATCAATCCACCATTAGAGACTTCCTCTACTCTCTCTCCTCTCCTGCCCCTTACCCTTCTGTTGCTGATTGGTGGAGCACTGTGAGGCTCTACACTGATCAAACTGGCTCAAACATCACTAGAACCATTGCTCTCTCCGGAGAGTTTTACGATTCTTCATACTCCCATGGAAGCTCTCTCAGCCGCCTTTCGATGCAGTCCATCATAAAAAATGCTGTCACTTCACATCCAAGAGCCTTGCCTCTCAACCCGAGAAACGGCGTTTACTTAGTTCTGAGCTCATCTGATGTTAGGGTTCAAGACTTCTGCAGGGCGGTATGTGGTTTTCACTACTTCACATTTCCAACCCTAGTTGGTGTGACTGTGCCGTATGCATGGGTGGGTTATAGCGGGAGTCAGTGTCCGGGCGTATGCGCTTACCCTTTTGCCTGGCCTAAGGACTCAGGCCGGCCGCCACCAGGCACACCTGGAGGGAACACCATTATGCGCGCGCCCAACGGGGACGCGGGCACTGATGGGATGATAAGTGTGATAGCTCATGAGCTAGCGGAGGTCTCGAGCAACCCGCTTGTGAATGCGTGGTACGCAGGCGATGATCCAACTGCACCGACAGAAATTGCAGATTTGTGTCTGGGGGTTTATGGTAGTGGCGGGGGCGGAGGGTATGTTGGGGCGGTTTCAAAGGACAGATGGGGAAATGGGTTTAATGTAAATGGGGTGAAAGGAAGAAAGTTTTTGGTACAGTGGATTTGGAACCCTGTGAAAAGAAGATGCTTTGGTCCCAATGCTATGGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Phi_1

Protein Analysis

339

Amino Acids

37.2

Weight (kDa)

7.02

Isoelectric Point (pI)

36.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Phi_1 PF04674 48 - 333 4.6e-100 Phosphate-induced protein 1 conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016520)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G35150
fragaria_vesca FvH4_3g12280
malus_domestica MD10G1232600.v1.1
prunus_persica Prupe.4G111900_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0020091
rosa_laevigata RLG00000032498
rosa_multiflora Rmu_sc0009586.1_g000003
rosa_roxburghii Rroxscaffold_1G00058110
rosa_rugosa Rorug05G0056800
rosa_samantha Rh5AG147000 Rh5BG146400 Rh5CG158100 Rh5DG146000
rosa_wichuraiana Rw5G012990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 708, 710, 725
AccIII TCCGGA 1 cut(s) 356
AclWI GGATC 1 cut(s) 809
AcoI YGGCCR 2 cut(s) 202, 668
AcuI CTGAAG 1 cut(s) 128
AfaI GTAC 3 cut(s) 149, 803, 960
AfiI CCNNNNNNNGG 2 cut(s) 476, 677
AgsI TTSAA 3 cut(s) 100, 518, 900
AjnI CCWGG 3 cut(s) 647, 676, 685
AluBI AGCT 4 cut(s) 393, 498, 755, 763
AluI AGCT 4 cut(s) 393, 498, 755, 763
Alw21I GWGCWC 2 cut(s) 299, 500
Alw26I GTCTC 2 cut(s) 231, 778
AlwI GGATC 1 cut(s) 809
Ama87I CYCGRG 2 cut(s) 469, 775
Aor13HI TCCGGA 1 cut(s) 356
AoxI GGCC 4 cut(s) 202, 650, 664, 668
AspLEI GCGC 4 cut(s) 635, 708, 710, 712
AspS9I GGNCC 3 cut(s) 139, 158, 998
AsuC2I CCSGG 1 cut(s) 624
AsuHPI GGTGA 1 cut(s) 949
AsuNHI GCTAGC 1 cut(s) 763
AvaI CYCGRG 2 cut(s) 469, 775
AvaII GGWCC 3 cut(s) 139, 158, 998
AxyI CCTNAGG 1 cut(s) 654
BaeGI GKGCMC 1 cut(s) 731
BalI TGGCCA 1 cut(s) 204
BanII GRGCYC 1 cut(s) 500
Bbv12I GWGCWC 2 cut(s) 299, 500
BccI CCATC 4 cut(s) 185, 428, 728, 903
BceAI ACGGC 2 cut(s) 493, 571
BciT130I CCWGG 3 cut(s) 649, 678, 687
BclI TGATCA 1 cut(s) 316
BcnI CCSGG 1 cut(s) 624
BcoDI GTCTC 2 cut(s) 231, 778
BfaI CTAG 4 cut(s) 339, 569, 764, 1015
BfmI CTRYAG 1 cut(s) 526
BisI GCNGC 2 cut(s) 403, 671
BlsI GCNGC 2 cut(s) 404, 672
Bme1390I CCNGG 4 cut(s) 624, 649, 678, 687
Bme18I GGWCC 3 cut(s) 139, 158, 998
BmeT110I CYCGRG 2 cut(s) 469, 775
BmgT120I GGNCC 3 cut(s) 139, 158, 998
BmiI GGNNCC 5 cut(s) 83, 159, 212, 974, 1000
BmrFI CCNGG 4 cut(s) 624, 649, 678, 687
BmsI GCATC 2 cut(s) 402, 980
BmtI GCTAGC 1 cut(s) 767
BplI GAGNNNNNCTC 2 cut(s) 228, 260
BpmI CTGGAG 1 cut(s) 708
BpuMI CCSGG 1 cut(s) 624
BsaI GGTCTC 1 cut(s) 778
BsaJI CCNNGG 1 cut(s) 385
BsaWI WCCGGW 1 cut(s) 356
BsaXI ACNNNNNCTCC 6 cut(s) 239, 269, 604, 634, 870, 900
Bsc4I CCNNNNNNNGG 2 cut(s) 476, 677
Bse118I RCCGGY 1 cut(s) 666
Bse1I ACTGG 2 cut(s) 212, 328
Bse21I CCTNAGG 1 cut(s) 654
Bse3DI GCAATG 1 cut(s) 345
BseAI TCCGGA 1 cut(s) 356
BseBI CCWGG 3 cut(s) 649, 678, 687
BseDI CCNNGG 1 cut(s) 385
BseGI GGATG 2 cut(s) 445, 744
BseLI CCNNNNNNNGG 2 cut(s) 476, 677
BseMI GCAATG 1 cut(s) 345
BseMII CTCAG 3 cut(s) 412, 485, 675
BseNI ACTGG 2 cut(s) 212, 328
BsePI GCGCGC 2 cut(s) 706, 708
BseRI GAGGAG 1 cut(s) 247
BseSI GKGCMC 1 cut(s) 731
BseX3I CGGCCG 1 cut(s) 668
BsgI GTGCAG 1 cut(s) 807
Bsh1236I CGCG 3 cut(s) 708, 710, 725
Bsh1285I CGRYCG 1 cut(s) 671
BshFI GGCC 4 cut(s) 204, 652, 666, 670
BsiEI CGRYCG 1 cut(s) 671
BsiHKAI GWGCWC 2 cut(s) 299, 500
BsiHKCI CYCGRG 2 cut(s) 469, 775
BsiSI CCGG 3 cut(s) 357, 623, 667
BslFI GGGAC 2 cut(s) 734, 984
BslI CCNNNNNNNGG 2 cut(s) 476, 677
BsmAI GTCTC 2 cut(s) 231, 778
BsmFI GGGAC 2 cut(s) 734, 984
BsmI GAATGC 1 cut(s) 799
BsnI GGCC 4 cut(s) 204, 652, 666, 670
Bso31I GGTCTC 1 cut(s) 778
BsoBI CYCGRG 2 cut(s) 469, 775
Bsp1286I GDGCHC 3 cut(s) 299, 500, 731
Bsp13I TCCGGA 1 cut(s) 356
Bsp143I GATC 3 cut(s) 130, 316, 814
Bsp19I CCATGG 1 cut(s) 385
BspANI GGCC 4 cut(s) 204, 652, 666, 670
BspCNI CTCAG 3 cut(s) 411, 486, 674
BspEI TCCGGA 1 cut(s) 356
BspFNI CGCG 3 cut(s) 708, 710, 725
BspHI TCATGA 1 cut(s) 757
BspLI GGNNCC 5 cut(s) 83, 159, 212, 974, 1000
BspMAI CTGCAG 1 cut(s) 530
BspOI GCTAGC 1 cut(s) 767
BspPI GGATC 1 cut(s) 809
BspTNI GGTCTC 1 cut(s) 778
BsrDI GCAATG 1 cut(s) 345
BsrFI RCCGGY 1 cut(s) 666
BsrI ACTGG 2 cut(s) 212, 328
BssAI RCCGGY 1 cut(s) 666
BssECI CCNNGG 1 cut(s) 385
BssHII GCGCGC 2 cut(s) 706, 708
BssMI GATC 3 cut(s) 130, 316, 814
BssT1I CCWWGG 1 cut(s) 385
Bst2UI CCWGG 3 cut(s) 649, 678, 687
Bst4CI ACNGT 3 cut(s) 301, 583, 963
Bst6I CTCTTC 1 cut(s) 46
BstAPI GCANNNNNTGC 1 cut(s) 10
BstC8I GCNNGC 6 cut(s) 668, 708, 710, 727, 765, 808
BstDEI CTNAG 5 cut(s) 398, 487, 494, 654, 661
BstDSI CCRYGG 1 cut(s) 385
BstF5I GGATG 2 cut(s) 445, 744
BstFNI CGCG 3 cut(s) 708, 710, 725
BstHHI GCGC 4 cut(s) 635, 708, 710, 712
BstKTI GATC 3 cut(s) 133, 319, 817
BstMAI GTCTC 2 cut(s) 231, 778
BstMBI GATC 3 cut(s) 130, 316, 814
BstMCI CGRYCG 1 cut(s) 671
BstMWI GCNNNNNNNGC 3 cut(s) 10, 399, 803
BstNI CCWGG 3 cut(s) 649, 678, 687
BstSCI CCNGG 4 cut(s) 622, 647, 676, 685
BstSFI CTRYAG 1 cut(s) 526
BstSLI GKGCMC 1 cut(s) 731
BstUI CGCG 3 cut(s) 708, 710, 725
BstXI CCANNNNNNTGG 1 cut(s) 1009
BstZI CGGCCG 1 cut(s) 668
Bsu36I CCTNAGG 1 cut(s) 654
BsuRI GGCC 4 cut(s) 204, 652, 666, 670
BtgI CCRYGG 1 cut(s) 385
BtgZI GCGATG 1 cut(s) 825
BtsCI GGATG 2 cut(s) 445, 744
BtsIMutI CAGTG 6 cut(s) 205, 297, 312, 623, 729, 968
Cac8I GCNNGC 6 cut(s) 668, 708, 710, 727, 765, 808
CciI TCATGA 1 cut(s) 757
CfoI GCGC 4 cut(s) 635, 708, 710, 712
Cfr10I RCCGGY 1 cut(s) 666
Cfr13I GGNCC 3 cut(s) 139, 158, 998
CseI GACGC 1 cut(s) 731
Csp6I GTAC 3 cut(s) 148, 802, 959
CviAII CATG 4 cut(s) 78, 386, 594, 758
CviQI GTAC 3 cut(s) 148, 802, 959
DdeI CTNAG 5 cut(s) 398, 487, 494, 654, 661
DpnI GATC 3 cut(s) 132, 318, 816
DpnII GATC 3 cut(s) 130, 316, 814
EaeI YGGCCR 2 cut(s) 202, 668
EagI CGGCCG 1 cut(s) 668
Eam1104I CTCTTC 1 cut(s) 46
EarI CTCTTC 1 cut(s) 46
EciI GGCGGA 1 cut(s) 891
Ecl136II GAGCTC 1 cut(s) 498
EclXI CGGCCG 1 cut(s) 668
Eco130I CCWWGG 1 cut(s) 385
Eco24I GRGCYC 1 cut(s) 500
Eco31I GGTCTC 1 cut(s) 778
Eco47I GGWCC 3 cut(s) 139, 158, 998
Eco52I CGGCCG 1 cut(s) 668
Eco53kI GAGCTC 1 cut(s) 498
Eco57I CTGAAG 1 cut(s) 128
Eco81I CCTNAGG 1 cut(s) 654
Eco88I CYCGRG 2 cut(s) 469, 775
EcoICRI GAGCTC 1 cut(s) 498
EcoO109I RGGNCCY 1 cut(s) 158
EcoRII CCWGG 3 cut(s) 647, 676, 685
EcoT14I CCWWGG 1 cut(s) 385
EcoT22I ATGCAT 1 cut(s) 595
EcoT38I GRGCYC 1 cut(s) 500
ErhI CCWWGG 1 cut(s) 385
FaeI CATG 4 cut(s) 81, 389, 597, 761
FaqI GGGAC 2 cut(s) 734, 984
FatI CATG 4 cut(s) 77, 385, 593, 757
FauI CCCGC 4 cut(s) 602, 718, 792, 863
FauNDI CATATG 1 cut(s) 153
FbaI TGATCA 1 cut(s) 316
Fnu4HI GCNGC 2 cut(s) 403, 671
FokI GGATG 2 cut(s) 432, 751
FriOI GRGCYC 1 cut(s) 500
FseI GGCCGGCC 1 cut(s) 670
Fsp4HI GCNGC 2 cut(s) 403, 671
FspBI CTAG 4 cut(s) 339, 569, 764, 1015
GlaI GCGC 4 cut(s) 634, 707, 709, 711
GluI GCNGC 2 cut(s) 403, 671
GsuI CTGGAG 1 cut(s) 708
HaeIII GGCC 4 cut(s) 204, 652, 666, 670
HapII CCGG 3 cut(s) 357, 623, 667
HgaI GACGC 1 cut(s) 731
HhaI GCGC 4 cut(s) 635, 708, 710, 712
Hin1II CATG 4 cut(s) 81, 389, 597, 761
Hin6I GCGC 4 cut(s) 633, 706, 708, 710
HinP1I GCGC 4 cut(s) 633, 706, 708, 710
HinfI GANTC 3 cut(s) 371, 613, 659
HpaII CCGG 3 cut(s) 357, 623, 667
HphI GGTGA 1 cut(s) 949
Hpy166II GTNNAC 2 cut(s) 139, 484
Hpy188I TCNGA 3 cut(s) 130, 495, 505
Hpy188III TCNNGA 4 cut(s) 357, 518, 758, 775
Hpy8I GTNNAC 2 cut(s) 139, 484
HpyAV CCTTC 2 cut(s) 152, 285
HpyCH4III ACNGT 3 cut(s) 301, 583, 963
HpyCH4V TGCA 8 cut(s) 4, 13, 21, 415, 528, 593, 824, 839
HpyF10VI GCNNNNNNNGC 3 cut(s) 10, 399, 803
HpyF3I CTNAG 5 cut(s) 398, 487, 494, 654, 661
Hsp92II CATG 4 cut(s) 81, 389, 597, 761
HspAI GCGC 4 cut(s) 633, 706, 708, 710
Kpn2I TCCGGA 1 cut(s) 356
KroI GCCGGC 1 cut(s) 666
KroNI GCCGGC 1 cut(s) 668
Ksp22I TGATCA 1 cut(s) 316
Kzo9I GATC 3 cut(s) 130, 316, 814
LmnI GCTCC 2 cut(s) 81, 294
LweI GCATC 2 cut(s) 402, 980
MaeI CTAG 4 cut(s) 339, 569, 764, 1015
MaeIII GTNAC 2 cut(s) 436, 577
MalI GATC 3 cut(s) 132, 318, 816
MboI GATC 3 cut(s) 130, 316, 814
MboII GAAGA 8 cut(s) 19, 22, 25, 28, 33, 366, 957, 999
MhlI GDGCHC 3 cut(s) 299, 500, 731
MlsI TGGCCA 1 cut(s) 204
MluCI AATT 3 cut(s) 60, 95, 834
MluNI TGGCCA 1 cut(s) 204
MlyI GAGTC 2 cut(s) 622, 653
MmeI TCCRAC 2 cut(s) 587, 842
MnlI CCTC 8 cut(s) 112, 254, 268, 297, 471, 683, 763, 872
Mox20I TGGCCA 1 cut(s) 204
Mph1103I ATGCAT 1 cut(s) 595
MroI TCCGGA 1 cut(s) 356
MroNI GCCGGC 1 cut(s) 666
MscI TGGCCA 1 cut(s) 204
MseI TTAA 1 cut(s) 924
MslI CAYNNNNRTG 1 cut(s) 701
Msp20I TGGCCA 1 cut(s) 204
MspI CCGG 3 cut(s) 357, 623, 667
MspR9I CCNGG 4 cut(s) 624, 649, 678, 687
Mva1269I GAATGC 1 cut(s) 799
MvaI CCWGG 3 cut(s) 649, 678, 687
MvnI CGCG 3 cut(s) 708, 710, 725
MwoI GCNNNNNNNGC 3 cut(s) 10, 399, 803
NaeI GCCGGC 1 cut(s) 668
NciI CCSGG 1 cut(s) 624
NcoI CCATGG 1 cut(s) 385
NdeI CATATG 1 cut(s) 153
NdeII GATC 3 cut(s) 130, 316, 814
NgoMIV GCCGGC 1 cut(s) 666
NheI GCTAGC 1 cut(s) 763
NlaIII CATG 4 cut(s) 81, 389, 597, 761
NlaIV GGNNCC 5 cut(s) 83, 159, 212, 974, 1000
NmuCI GTSAC 2 cut(s) 436, 577
NsiI ATGCAT 1 cut(s) 595
PaeR7I CTCGAG 1 cut(s) 775
PagI TCATGA 1 cut(s) 757
PauI GCGCGC 2 cut(s) 706, 708
PctI GAATGC 1 cut(s) 799
PdiI GCCGGC 1 cut(s) 668
PfeI GAWTC 1 cut(s) 371
PkrI GCNGC 2 cut(s) 404, 672
PleI GAGTC 2 cut(s) 621, 653
PpsI GAGTC 2 cut(s) 621, 653
PpuMI RGGWCCY 1 cut(s) 158
Psp124BI GAGCTC 1 cut(s) 500
Psp5II RGGWCCY 1 cut(s) 158
Psp6I CCWGG 3 cut(s) 647, 676, 685
PspGI CCWGG 3 cut(s) 647, 676, 685
PspN4I GGNNCC 5 cut(s) 83, 159, 212, 974, 1000
PspPI GGNCC 3 cut(s) 139, 158, 998
PspPPI RGGWCCY 1 cut(s) 158
PstI CTGCAG 1 cut(s) 530
PteI GCGCGC 2 cut(s) 706, 708
RigI GGCCGGCC 1 cut(s) 670
RsaI GTAC 3 cut(s) 149, 803, 960
RsaNI GTAC 3 cut(s) 148, 802, 959
RseI CAYNNNNRTG 1 cut(s) 701
SacI GAGCTC 1 cut(s) 500
SaqAI TTAA 1 cut(s) 924
SatI GCNGC 2 cut(s) 403, 671
Sau3AI GATC 3 cut(s) 130, 316, 814
Sau96I GGNCC 3 cut(s) 139, 158, 998
SchI GAGTC 2 cut(s) 622, 653
ScrFI CCNGG 4 cut(s) 624, 649, 678, 687
SduI GDGCHC 3 cut(s) 299, 500, 731
SetI ASST 8 cut(s) 144, 186, 395, 500, 688, 757, 765, 774
SfaNI GCATC 2 cut(s) 402, 980
SfcI CTRYAG 1 cut(s) 526
Sfr274I CTCGAG 1 cut(s) 775
SinI GGWCC 3 cut(s) 139, 158, 998
SlaI CTCGAG 1 cut(s) 775
SmiMI CAYNNNNRTG 1 cut(s) 701
SmlI CTYRAG 1 cut(s) 775
SmoI CTYRAG 1 cut(s) 775
Sse9I AATT 3 cut(s) 60, 95, 834
SspI AATATT 1 cut(s) 74
SspMI CTAG 4 cut(s) 339, 569, 764, 1015
SstI GAGCTC 1 cut(s) 500
StyD4I CCNGG 4 cut(s) 622, 647, 676, 685
StyI CCWWGG 1 cut(s) 385
TaaI ACNGT 3 cut(s) 301, 583, 963
TaqI TCGA 2 cut(s) 410, 776
TasI AATT 3 cut(s) 60, 95, 834
TauI GCSGC 2 cut(s) 405, 673
TfiI GAWTC 1 cut(s) 371
Tru1I TTAA 1 cut(s) 924
Tru9I TTAA 1 cut(s) 924
TscAI CASTG 6 cut(s) 212, 304, 319, 623, 736, 968
TseFI GTSAC 2 cut(s) 436, 577
Tsp45I GTSAC 2 cut(s) 436, 577
TspDTI ATGAA 4 cut(s) 33, 66, 114, 366
TspRI CASTG 6 cut(s) 212, 304, 319, 623, 736, 968
VpaK11BI GGWCC 3 cut(s) 139, 158, 998
XhoI CTCGAG 1 cut(s) 775
XspI CTAG 4 cut(s) 339, 569, 764, 1015
Zsp2I ATGCAT 1 cut(s) 595
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.