FvH4_3g13200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0010200
Physical Location & Seq
Reverse (-)
7878326 .. 7879974
1649 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g13200.t1

Sequence Viewer

Length: 357 bp
ATGGCGAAGTCGATGAGATGCAAGAGAGAGAAGAGGCTGCGAGCTATCCGGAGAGAGATGGTAGAGCCCTACTACGAGAAGAAAGACGAAGCCAAGCTCGCTGCCCAAGAAGCTGCCCTCGCCGCCCCTAAGCTGCCCGTCAAGCCCTCTTCCAAGGCCTCCTCCTCCATGGAGATCACCCCTGTCAGCACATCTGAAAACGCAATGGAAGTGGAGATGGCTGATGGCAGTCAGACAAAGAGTTCATTGAAGCCTTTTGGGGGGATAAGTAAGAAATCCCAAAGGGTTTTCAAGGTGGGCAAGAGAAGGCGCCATGGCAAGGGCAAGGGCTCAAAGGTTAAGAAGCGTCATATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

13.17

Weight (kDa)

10.5

Isoelectric Point (pI)

59.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010200)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G30880 AT1G30880
fragaria_vesca FvH4_3g13200
malus_domestica MD10G1226000.v1.1
prunus_persica Prupe.4G119300_v2.0.a1
pyrus_communis pycom05g22080 pycom10g18990
rosa_chinensis RchiOBHm_Chr5g0021541
rosa_laevigata RLG00000032613
rosa_multiflora Rmu_sc0002052.1_g000012 Rmu_sc0023070.1_g000004
rosa_roxburghii Rroxscaffold_1G00057110
rosa_rugosa Rorug02G0284200 Rorug05G0067100
rosa_samantha Rh5AG156400 Rh5BG155900 Rh5CG169700 Rh5CG170100 Rh5DG156200 Rh5DG156300
rosa_wichuraiana Rw5G013920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 309
AccIII TCCGGA 1 cut(s) 48
AciI CCGC 1 cut(s) 123
AcyI GRCGYC 1 cut(s) 310
AfiI CCNNNNNNNGG 2 cut(s) 260, 319
AgsI TTSAA 2 cut(s) 250, 292
AluBI AGCT 4 cut(s) 44, 97, 113, 133
AluI AGCT 4 cut(s) 44, 97, 113, 133
Aor13HI TCCGGA 1 cut(s) 48
AoxI GGCC 1 cut(s) 156
ApeKI GCWGC 4 cut(s) 37, 101, 113, 133
AspLEI GCGC 1 cut(s) 312
AsuHPI GGTGA 1 cut(s) 169
BanI GGYRCC 1 cut(s) 309
BanII GRGCYC 2 cut(s) 69, 332
BbvI GCAGC 4 cut(s) 24, 88, 100, 120
BccI CCATC 3 cut(s) 52, 211, 218
BfoI RGCGCY 1 cut(s) 313
BisI GCNGC 5 cut(s) 38, 102, 114, 123, 134
BlsI GCNGC 5 cut(s) 39, 103, 115, 124, 135
BmiI GGNNCC 1 cut(s) 311
BmsI GCATC 1 cut(s) 8
Bpu10I CCTNAGC 1 cut(s) 129
BsaHI GRCGYC 1 cut(s) 310
BsaJI CCNNGG 3 cut(s) 153, 168, 313
BsaWI WCCGGW 1 cut(s) 48
Bsc4I CCNNNNNNNGG 2 cut(s) 260, 319
Bse3DI GCAATG 1 cut(s) 210
BseAI TCCGGA 1 cut(s) 48
BseDI CCNNGG 3 cut(s) 153, 168, 313
BseLI CCNNNNNNNGG 2 cut(s) 260, 319
BseMI GCAATG 1 cut(s) 210
BseRI GAGGAG 2 cut(s) 151, 154
BseXI GCAGC 4 cut(s) 24, 88, 100, 120
BshFI GGCC 1 cut(s) 158
BshNI GGYRCC 1 cut(s) 309
BsiSI CCGG 1 cut(s) 49
BslI CCNNNNNNNGG 2 cut(s) 260, 319
BsnI GGCC 1 cut(s) 158
Bsp1286I GDGCHC 2 cut(s) 69, 332
Bsp13I TCCGGA 1 cut(s) 48
Bsp143I GATC 1 cut(s) 174
Bsp19I CCATGG 2 cut(s) 168, 313
BspACI CCGC 1 cut(s) 123
BspANI GGCC 1 cut(s) 158
BspEI TCCGGA 1 cut(s) 48
BspLI GGNNCC 1 cut(s) 311
BspT107I GGYRCC 1 cut(s) 309
BsrDI GCAATG 1 cut(s) 210
BssECI CCNNGG 3 cut(s) 153, 168, 313
BssMI GATC 1 cut(s) 174
BssNI GRCGYC 1 cut(s) 310
BssT1I CCWWGG 3 cut(s) 153, 168, 313
Bst6I CTCTTC 2 cut(s) 26, 154
BstACI GRCGYC 1 cut(s) 310
BstC8I GCNNGC 2 cut(s) 42, 99
BstDEI CTNAG 1 cut(s) 129
BstDSI CCRYGG 2 cut(s) 168, 313
BstH2I RGCGCY 1 cut(s) 313
BstHHI GCGC 1 cut(s) 312
BstKTI GATC 1 cut(s) 177
BstMBI GATC 1 cut(s) 174
BstMWI GCNNNNNNNGC 5 cut(s) 98, 110, 119, 122, 142
BstV1I GCAGC 4 cut(s) 24, 88, 100, 120
BsuRI GGCC 1 cut(s) 158
BtgI CCRYGG 2 cut(s) 168, 313
Cac8I GCNNGC 2 cut(s) 42, 99
CfoI GCGC 1 cut(s) 312
CseI GACGC 1 cut(s) 335
CspCI CAANNNNNGTGG 2 cut(s) 192, 227
CviAII CATG 2 cut(s) 169, 314
DdeI CTNAG 1 cut(s) 129
DinI GGCGCC 1 cut(s) 311
DpnI GATC 1 cut(s) 176
DpnII GATC 1 cut(s) 174
Eam1104I CTCTTC 2 cut(s) 26, 154
EarI CTCTTC 2 cut(s) 26, 154
Eco130I CCWWGG 3 cut(s) 153, 168, 313
Eco147I AGGCCT 1 cut(s) 158
Eco24I GRGCYC 2 cut(s) 69, 332
EcoT14I CCWWGG 3 cut(s) 153, 168, 313
EcoT38I GRGCYC 2 cut(s) 69, 332
EgeI GGCGCC 1 cut(s) 311
EheI GGCGCC 1 cut(s) 311
ErhI CCWWGG 3 cut(s) 153, 168, 313
FaeI CATG 2 cut(s) 172, 317
FaiI YATR 3 cut(s) 170, 315, 351
FatI CATG 2 cut(s) 168, 313
Fnu4HI GCNGC 5 cut(s) 38, 102, 114, 123, 134
FriOI GRGCYC 2 cut(s) 69, 332
Fsp4HI GCNGC 5 cut(s) 38, 102, 114, 123, 134
GlaI GCGC 1 cut(s) 311
GluI GCNGC 5 cut(s) 38, 102, 114, 123, 134
HaeII RGCGCY 1 cut(s) 313
HaeIII GGCC 1 cut(s) 158
HapII CCGG 1 cut(s) 49
HgaI GACGC 1 cut(s) 335
HhaI GCGC 1 cut(s) 312
Hin1I GRCGYC 1 cut(s) 310
Hin1II CATG 2 cut(s) 172, 317
Hin6I GCGC 1 cut(s) 310
HinP1I GCGC 1 cut(s) 310
HpaII CCGG 1 cut(s) 49
HphI GGTGA 1 cut(s) 169
Hpy188I TCNGA 3 cut(s) 196, 234, 356
Hpy188III TCNNGA 1 cut(s) 49
HpyAV CCTTC 1 cut(s) 300
HpyCH4V TGCA 1 cut(s) 21
HpyF10VI GCNNNNNNNGC 5 cut(s) 98, 110, 119, 122, 142
HpyF3I CTNAG 1 cut(s) 129
Hsp92I GRCGYC 1 cut(s) 310
Hsp92II CATG 2 cut(s) 172, 317
HspAI GCGC 1 cut(s) 310
KasI GGCGCC 1 cut(s) 309
Kpn2I TCCGGA 1 cut(s) 48
Kzo9I GATC 1 cut(s) 174
LpnPI CCDG 2 cut(s) 62, 195
Lsp1109I GCAGC 4 cut(s) 24, 88, 100, 120
LweI GCATC 1 cut(s) 8
MalI GATC 1 cut(s) 176
MboI GATC 1 cut(s) 174
MboII GAAGA 3 cut(s) 43, 91, 141
MhlI GDGCHC 2 cut(s) 69, 332
Mly113I GGCGCC 1 cut(s) 310
MnlI CCTC 6 cut(s) 27, 128, 157, 169, 172, 175
MroI TCCGGA 1 cut(s) 48
MseI TTAA 1 cut(s) 339
MspI CCGG 1 cut(s) 49
MwoI GCNNNNNNNGC 5 cut(s) 98, 110, 119, 122, 142
NarI GGCGCC 1 cut(s) 310
NcoI CCATGG 2 cut(s) 168, 313
NdeII GATC 1 cut(s) 174
NlaIII CATG 2 cut(s) 172, 317
NlaIV GGNNCC 1 cut(s) 311
PceI AGGCCT 1 cut(s) 158
PkrI GCNGC 5 cut(s) 39, 103, 115, 124, 135
PluTI GGCGCC 1 cut(s) 313
PspN4I GGNNCC 1 cut(s) 311
SaqAI TTAA 1 cut(s) 339
SatI GCNGC 5 cut(s) 38, 102, 114, 123, 134
Sau3AI GATC 1 cut(s) 174
SduI GDGCHC 2 cut(s) 69, 332
SetI ASST 6 cut(s) 46, 99, 115, 135, 297, 339
SfaNI GCATC 1 cut(s) 8
SfoI GGCGCC 1 cut(s) 311
SseBI AGGCCT 1 cut(s) 158
SsiI CCGC 1 cut(s) 123
SspDI GGCGCC 1 cut(s) 309
StuI AGGCCT 1 cut(s) 158
StyI CCWWGG 3 cut(s) 153, 168, 313
TaqI TCGA 1 cut(s) 11
TauI GCSGC 1 cut(s) 125
Tru1I TTAA 1 cut(s) 339
Tru9I TTAA 1 cut(s) 339
TseI GCWGC 4 cut(s) 37, 101, 113, 133
TspDTI ATGAA 1 cut(s) 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.